Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsLiXu_10g0009360		OGI:10044000 \| 16/16			LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)			Chr10:15088832-15094909		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		RLCK298, OsRLCK298, PTK17, OsPTK17, OsCrRLK1L16, FLR11
DNA seq		aaatgcaaatggagaattttctatattttaaattgattgcaaggattggagaatggcatgtttgtacatatgctccacacaaattattgattcatttatttactctcgggtggtgccatgtacacaaatggctctacaatgccatcatccatggccagaagtggttccagggcctccacaaccgctgacatccggggtcgagacttagggctaacactcaagcactgatacgctatggccgcagccttttgtacggctcgagtcgagtactgcccgttcaagcttttgtcgatgacacggttgagccggcgagagtcatgtaggcatggccgagcccattccactaggttttgctctcgcagtggtctcttcttatccacagctttccgtccggttagtagctccagcagcaccacaccatagctatacacatcgctctttgtcgttagatgacctgcaataacatgaagtaatattaatagccaattagttgaaacatgaaaggtatatattttttatttctttagggtacatgaaaggtatattatgttaaacttcgccactactcgtttacaaaactagctagctaggtagactatatgtgtgacaattttagtaccagtcatgatgtattctggtgcggcatagccctgtgtgcccatcactctagtggagacatgtgtctcgtcttcttgaggcccatctttggccagtccgaaatccgaaagttttgcttcgtagtcctaccaataattaaacaatgtcagtcacaaaatgtcatatgacaacagctaccaggatgggagaagctctccaatatttcctttccatttgataaattgcagcgttttaatgtgtgctccactcatttataattcatatatacagataaagacaaattgttactagcttaatacatatcctctgctacggatatatattgcttagaacaaattagttataaggttttctttagaacaatgcatccttattggtatttttgcatgataaacttgtttttatggatgaaataagatagataaaaacaatatatataagtactattttgaaatattaaaaggatgttggataaaaaccaatgtataaataagcttatatagatagatatgtataccgagttgagtaggatgttggaggtcttgaagtcgcgatagatgacgggcttggcagcttcatggaggaaggccaaacctctggccgctccaatggcgatcttcaagcgtgttgaccacggcagcgacgcagagtactctgcagtttcaatttgcacaatcgatcagttcatgcattatttcatctacaactaattatgacccatcgacaaatcagatgatgaaagcaaaaggcggcaatgcaaattgttaggagcagccaattaagtagtaagtatgtgcatctccactgaaattaattcaatgcaagctttgaatattttttgttgtcttgataccaacattaaagaagattaattgctagctaccagaaataactgagagaatgaattgtcttccattctatcttgtgaagttgacaacattgattaccacattagaatgatatatataggcttccatggtaatgcagatgatgcactattttttttattatgtagaaaatacacaagcacacaaaagcacctatatgaatgcagctcttaacacatggtcaagagataaagaccaagagtaaattcgtttatactattatcgttatcgaaatttaaactctggtagatggagttatacacccataaagccatcactccacaccagcattttgctttccctatctgcactttttttatcttttatgatgagatgaacattttgtttgttgtcacatgcatgattggctacttttgacttgtgtggcctatataagtgccttatccaaattacatgacttgtaatcattgtggcctacttggattctccaatttgataaactatcaaagcaattagaaatttatgcttatttttccacgcttcaattcgatccctttatcaactaacaatgggaatgtgtgttgtcactttaatttgagctgatgaccaaaacgaattttaggccacacaccaaattaaacgataagaaattaagaaattaaattgtgtcatgcttgcatcacataaacgaggccatgatattattttaccatgtgtacatgctcgtgagaacgttgatgtaaacatgtaacagatttgacactaacatgtgtaaaaccctctcaaaagcagtatgaaccatggaaaaattggagccacagtgtggtggaatatgcaaaaggatgacttctcttgattaataagttgcatgcacggctggagttggggtgttattttgagggtctaagttggaatacttctaagcacaatgtaaacgggaatggtcaaattaacaatacttcaaacagaaatgattacttcaacggaaattcgccagtacatataaatttctaattggaaatggaaatggccaaattaacacaatctaaaatttggatgacttgtaatcatttgcttacttcaactatatgtactggcaaatgaagagctaattacctacggtttgattatgatctggtataccttgggagttcatccaatatgtatatacacaaatatttttatgctaaagtagaaaaagtttgattcatcattcctgtaaaacaaatctacaatttcttttgtgatgtgttgtatgctctctcatactaatttttcgtagttccattaaccagttcatatttatcagaacaataaaaaatatttaaaagaataatatcatgccctctcattagagatgtggttgggtagttaatagagagggatgttgaatgtggctatttataagtgtgccatcattttgttataagtcgtaacgtttattagtgataacaaatgatttggagggataacttttatatatgttcttagcgacttaaaatcaatactgaaaaataaaataggataaaaatagtaaatcaattctaaaattaagttttaaaatttaaacttgtgacgtggttgataataagctgaagatgaaataatagaaggcttaattttggtttaaacaattaaatgcctaaaacatgtcttgaattaaaatttctttgtttatttctgggattttggttgaaagaaaaaaaggaagcataagatggaatttgccgtacttttgaagaggtgcttctccaagctgcccctagccatgaactcgtagacgagaagtctgtgctcatcctcgtagcagtatccgatcagcttgacgaggtgatgatgtctcaattgcccaagaaatatgacttcagcctgcccaaattttacataatataatccattaattagttcaacacatgcccatattccatcagtataattaagttatgtcagaatttgaccaaaacctgtaaccactcttaaaaatactaattgtttgaccaaacaaatagcatattgcagtatatatagttagttaggtggctgatcgacattatccttgcctccgggtactaaaggattttaataggagattaagtatgaactaatgatcatgagaggaagacgtggcgactttctgaagggatcacagctaactaagtagctggcatgcactaataattattcaatttgctttggagtaggatttaccacagcattgacaggattcttatgtgtgatccgatcttgtttgttgtcaaatgaagtactaaaatggacgttgcaactgtttgtgtgtgtgctcaatttgtactgaactgatcgaaatcatcgtctataaaagttcaagacgaattaattctattatgtgttttcttaaaagggaaccttgttaaaaatatacaaacgacttctttaaagacaaaataaaatcattgcactaaatcatatatattccctcccatgagtgtgaagtttcataacgtacgtacgtacgtagttaacacatttaaactttcgaccaacaacttatatttgaatattttggttcaacttaattttaagaaatggtatatagctagatttatcttcaaattaaattagtttcatgatattataactttgctaaacaaatttactagttatcaataatcaaactagtgtattcgacagtgtcgctatccaaaatatcattattttctcgtatttcttttttctgttttgactggagccagtaaatgcatgctagataaactggccttcaataatatgaaaagagattgactactgcttaatttggacttttgcagtttggccttttcttttcaattaatgcagtttcccgaagttaaattaaaatatgcttaaatatgaagtcagggttaatagcacagtcaacatcatggcccttgaaatccggtttacgaaagaaactgaagtgtcatactgtacggtatgcacgggcttaacacagcttgataattagtcccaactaattatcacaaacgttacccctattaatttcggtgaaacattaacgactaactatagtaatggggctatatatgctaactcaaatactgcgtgttgattagtaaactatcgttaccaagtcatgcgttcaaaggcaaattaaacgacatgtgtagagtggacaatttccaaattaagaaattttgtagaaaaaggtgcaattcccacaaaaattgtccttccaaccatagaattccgtattgactttgcacacaatatggaaatgatatgaaaatatttacctaacaatcagtcacagataaaatatacatactaatcgattgaatttcattttgttgtgcgtcagccattatctcactcttgagtcattctttgctctcaccgtcaactaaaatttgctttaaaattagtgcaaatagaagcacgtcctcaagaacaacacccactgatcagtaattagggagttctaatcttagttctagggacaattaactacaatactatgactactaattaattaattacttgacttgaaatcgtactgataatctcagtgatcttaattagtactatatatatgatgagatagtctcagtgagacttgcttaatttacttcatttatagtaacaaaagacttgatcattactttgataagataatctctctcagtgaaactttatacttcatttctcacaagaagacttaattaattgcattgataagataatctcagtgaggctttgattagtaggtcagtccccacttaagacactagatatacttttcataagctccacatcattaagaaactagtactaaacactactcttttaatgtaaacatcacttttctatacttaaatttaatgctacttatctcacatgatgtcttggttttcttctcttttctcatttattcacttgttacattattttttattttaggtggcagcttatttaatattatggataccatccatcattagattgagaatggccgtatagtaatcaatcaatctaactaattcgccgttaattaatcaattaatcaccgggtaattaataactggatgagaaatgagattaattagtgagagaggaggagttaaactaattaccagccattccttgtggccctgggagccctcgaggtcgagcagcttgacggcgacggcctgcgcgcgcacgccgggcttgagccgctcgtcgacgtaccccttgtacaccggcccgaaccccccctcgcccacgaagttgctcaccgagaagtcccgcgtcgccctcctcagctcctccaccgtgaacgcctccaccccgctccccgccagcgactgcgacaggtcctccggcgacggcatcaccgccgccgccaccccgtcgttgctgttgcacgacgacggccgcgccggcagcggcgtccccgggttcttggccgccgccgagccgccgtcgctgtgggaggaggtgaagcagccgagcccgaacagcgagctccacgacggcgacgacgacgtcgtcgtcttcttccccatgattgccaaggtgtggaatggttgggaggaggatcggggggagttaatttatagggagcacgtcgcggtgttgggaattgggggatgat More
CDS seq		atggggaagaagacgacgacgtcgtcgtcgccgtcgtggagctcgctgttcgggctcggctgcttcacctcctcccacagcgacggcggctcggcggcggccaagaacccggggacgccgctgccggcgcggccgtcgtcgtgcaacagcaacgacggggtggcggcggcggtgatgccgtcgccggaggacctgtcgcagtcgctggcggggagcggggtggaggcgttcacggtggaggagctgaggagggcgacgcgggacttctcggtgagcaacttcgtgggcgagggggggttcgggccggtgtacaaggggtacgtcgacgagcggctcaagcccggcgtgcgcgcgcaggccgtcgccgtcaagctgctcgacctcgagggctcccagggccacaaggaatggctggctgaagtcatatttcttgggcaattgagacatcatcacctcgtcaagctgatcggatactgctacgaggatgagcacagacttctcgtctacgagttcatggctaggggcagcttggagaagcacctcttcaaaaagtactctgcgtcgctgccgtggtcaacacgcttgaagatcgccattggagcggccagaggtttggccttcctccatgaagctgccaagcccgtcatctatcgcgacttcaagacctccaacatcctactcaactcggactacgaagcaaaactttcggatttcggactggccaaagatgggcctcaagaagacgagacacatgtctccactagagtgatgggcacacagggctatgccgcaccagaatacatcatgactggtcatctaacgacaaagagcgatgtgtatagctatggtgtggtgctgctggagctactaaccggacggaaagctgtggataagaagagaccactgcgagagcaaaacctagtggaatgggctcggccatgcctacatgactctcgccggctcaaccgtgtcatcgacaaaagcttgaacgggcagtactcgactcgagccgtacaaaaggctgcggccatagcgtatcagtgcttgagtgttagccctaagtctcgaccccggatgtcagcggttgtggaggccctggaaccacttctggccatggatgatggcattgtagagccatttgtgtacatggcaccacccgagagtaaataa More
Protein seq		MGKKTTTSSSPSWSSLFGLGCFTSSHSDGGSAAAKNPGTPLPARPSSCNSNDGVAAAVMPSPEDLSQSLAGSGVEAFTVEELRRATRDFSVSNFVGEGGFGPVYKGYVDERLKPGVRAQAVAVKLLDLEGSQGHKEWLAEVIFLGQLRHHHLVKLIGYCYEDEHRLLVYEFMARGSLEKHLFKKYSASLPWSTRLKIAIGAARGLAFLHEAAKPVIYRDFKTSNILLNSDYEAKLSDFGLAKDGPQEDETHVSTRVMGTQGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRKAVDKKRPLREQNLVEWARPCLHDSRRLNRVIDKSLNGQYSTRAVQKAAAIAYQCLSVSPKSRPRMSAVVEALEPLLAMDDGIVEPFVYMAPPESK
Function		Serine/threonine-protein kinase RIPK [UniProtKB/Swiss-Prot:Q9ZUF4]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLiXu_10g0009360	OsLiXu_10g0009360.01	Chr10	15088839	15094909	-	NAM
CDS seq	atggggaagaagacgacgacgtcgtcgtcgccgtcgtggagctcgctgttcgggctcggctgcttcacctcctcccacagcgacggcggctcggcggcggccaagaacccggggacgccgctgccggcgcggccgtcgtcgtgcaacagcaacgacggggtggcggcggcggtgatgccgtcgccggaggacctgtcgcagtcgctggcggggagcggggtggaggcgttcacggtggaggagctgaggagggcgacgcgggacttctcggtgagcaacttcgtgggcgagggggggttcgggccggtgtacaaggggtacgtcgacgagcggctcaagcccggcgtgcgcgcgcaggccgtcgccgtcaagctgctcgacctcgagggctcccagggccacaaggaatggctggctgaagtcatatttcttgggcaattgagacatcatcacctcgtcaagctgatcggatactgctacgaggatgagcacagacttctcgtctacgagttcatggctaggggcagcttggagaagcacctcttcaaaaagtactctgcgtcgctgccgtggtcaacacgcttgaagatcgccattggagcggccagaggtttggccttcctccatgaagctgccaagcccgtcatctatcgcgacttcaagacctccaacatcctactcaactcggactacgaagcaaaactttcggatttcggactggccaaagatgggcctcaagaagacgagacacatgtctccactagagtgatgggcacacagggctatgccgcaccagaatacatcatgactggtcatctaacgacaaagagcgatgtgtatagctatggtgtggtgctgctggagctactaaccggacggaaagctgtggataagaagagaccactgcgagagcaaaacctagtggaatgggctcggccatgcctacatgactctcgccggctcaaccgtgtcatcgacaaaagcttgaacgggcagtactcgactcgagccgtacaaaaggctgcggccatagcgtatcagtgcttgagtgttagccctaagtctcgaccccggatgtcagcggttgtggaggccctggaaccacttctggccatggatgatggcattgtagagccatttgtgtacatggcaccacccgagagtaaataa More
Protein seq	MGKKTTTSSSPSWSSLFGLGCFTSSHSDGGSAAAKNPGTPLPARPSSCNSNDGVAAAVMPSPEDLSQSLAGSGVEAFTVEELRRATRDFSVSNFVGEGGFGPVYKGYVDERLKPGVRAQAVAVKLLDLEGSQGHKEWLAEVIFLGQLRHHHLVKLIGYCYEDEHRLLVYEFMARGSLEKHLFKKYSASLPWSTRLKIAIGAARGLAFLHEAAKPVIYRDFKTSNILLNSDYEAKLSDFGLAKDGPQEDETHVSTRVMGTQGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRKAVDKKRPLREQNLVEWARPCLHDSRRLNRVIDKSLNGQYSTRAVQKAAAIAYQCLSVSPKSRPRMSAVVEALEPLLAMDDGIVEPFVYMAPPESK More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLiXu_10g0009360	OsLiXu_10g0009360.02	Chr10	15088832	15089053	-	IsoSeq
CDS seq	atgtacaaacatgccattctccaatccttgcaatca
Protein seq	MYKHAILQSLQS

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.136841	0.0	0.168076

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_10g0395000	RBH	0.346795	0.348582	0.000000
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os10g25550	RBH	0.222361	0.222293	0.000000
Nipponbare \| IRGSP 1.0 \| RAP-db	Os10g0395000	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_10g0009510	RBH	0.282072	5.624822	0.463641
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_10g0009610	RBH	0.0	22.423100	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_10g0009420	RBH	0.0	23.402018	0.491535
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_10g0009820	RBH	0.0	0.254481	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_10g0009570	RBH	1.554322	13.199712	3.338396
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_10G0227600	RBH	0.2594725	10.4776685	0.006079
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_10g0009570	RBH	0.057560	0.913586	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_10G0246500	RBH	2.007573	12.265682	0.063082
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_10g0009370	RBH	0.0	0.000000	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_10g0009320	RBH	0.135413	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_10g0009760	RBH	0.000000	23.112236	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_03g0005830	RBH	0.094188	0.801154	0.890983
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_10g0009860	RBH	0.0	12.305744	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_10G009670	RBH	0.174462	0.989718	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_10g0009640	RBH	0.506655	26.936546	1.152993

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.