Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_10g0005610 OGI:10024530 | 16/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr10:8334449-8340087
Gene Symbol PEPCK, OsPEPCK
DNA seq

aacacaacttctcatatacatcactctgaaatagcttttaatatatatatgtcaccatcctcaaaatgggcattttgttcagttttaccgtacaagactaggtaacgagagataccatattttagtgttaatttatgatactttttggtactttacactagagaagtaccataaggtatcaaaaatttacactaaaataagtggtaccttgcgatacatcctcgaggaacataaaaaatcccttttatttggtatacattaagacatactactactattcaattaaaatcagaaatttggtcctgcagcagcaatctcatcagccagatcactaacaccacctttcttgtaatttgcaaataccttgaaatttctcttgaacagatctgccagctttagaagtgtcaacttgtatgagtctttgtcttcccactacatcatagttgaaaatggttggccaagctgcagcataaatcccatgcaaaaatatataatgttgaaattatggacttacggtatttattgggtcaagcaattcagatggaactccttccacttttgtggggatgtctagtccaaagacatctgtctttttgtagcttgtagccaaaagctcacccgagtgaatggcatcgatgattttccttgtgtaggccaagctgattcgctcacctacaccataactgaacaaccacaaagtgtgacatagtatgtgggtaagtttgtctaggccaagattatgcaagtttttcttctgtgctttggaggtacgtatataccttttagtagaggtattatatctcttgatgattaataacaccatatacctctacctccaccatagatcagagctcatatttcaatattactatactcaaatggactaggtttgtcagaccatacattatatgtcctacttgagtgctataaattattatttaaatcacaagtttgaaattttgagatataaatccctaattgcaattcaaacaagcgtcatccttacaattctcgaagtacgtacttactctcgctaattagttgatgattttttttaatggaattcaatccagcctctacatcaaattagttgagtaatcatagtaaacataatatcagaaaaacaagtcaacagtttaatttaccttcccccgatccaaccagtgttgacaagccatccggtagctccatgcttgttcatcttatctgccagcatggcagcgtaccgagttgggtggagcattataaaagctgcaccaaagcaggcagaaaatgtagcctgtggctccttgataccatcttcagttccagcgacctacacattgccatatatagcaacacaagaactaagaccaatagttcctccaatagagattaaatctaataaactgtgtctaattaccaatgcagtgtagccactgataaaatggtacatggtttgtgcatggctcaacttgctgacaggagggaggacaccaaatgcatcacatgcaagtaggataacattctttgggtgtggcccaacacatggtatcttagcattagctatgtattcaatagggtaagcagcacgggtattctctgcagaacagattatgaatgtcatgaattaggtacaattttctgttagtgtcacatgctatattctataaggttattatacttcggaaaacatttacctgtgacagatttttctgtataatcaacttcacgggagtgctcatcgaaaacaacattctccaacactaaaagttgatcaacgagagtaattaagaaaagaagtaaaaataaatccaaagttgttgagttgataaattctgcaagtgaggtgcatatagaagaaggattttgatccctcgaggggatatccccttgttgtctgcatttcactcaaatggttatgaaaaaatttgaaaaaaaattaagaagatgtattaacatgtgaatttgaacttacatatttgtggagtgttatatcatatgttaatacaccttctcaaTtttttttaatttttttcataaccatttaagtgacatgcaaagaacgagaggatatcctctctagggattaaaaaagtttccccgtgcatatacctgtgccaaacttgattgcatcccaaatgtcaggttctttctcctgagaaagatctatgcacttagcatagcagccgccctcaatgttagagataccattatcactccagcagtgttcatcatcaccaattaagatcctattcctgtctgttgacagagttgtctttccagtaccttgaagcatgcatatttagatagttactcacaagtaaaaacatatagtaattgccaatcaagaactatcttatcgcaaccattataaataattcagctacctgacaatccaaaaaacagggctacatcaccccctctgcccatgttgcagccagagtgcaacgagaggatctgctttttgggcatgaggtagtgcatcacactgaagaggcctttcttcatctctccagcatattgtgttcccaggatgaccatttctctccgcttaagatttaagtctatgctagttgacgatgtcatgtaatgcgtgtaacggttgcacgggaactgtccagcattgtagatggtgaagtcgggctcgccaaaattctctagttcctcgtatgttggccggatgcacctgtcatttacaaagaaaagtatttatatggaaacgcactaccagaatttgtactattctcaagtatcatgttgaataattggaatgacttgtaatatatagtaactactagaagcattaaagattgaaaattctggtagtactatttatgtttgagatacacgaaggcaaagtgaggatttacttatcttgttcagggtggcataaggagtgacctagaacagttcagagtattagaattgtctccatttgctggtacaaacatttgcacttacatgttgtgcatgaagagagaatggtaggccctcgcagagatgattcgaacttttatcctattgttggggtcccagtttaggaactgatcattaacaaacacctgtgacgaaattcatcattaaatacagtactatagtaacacattcaggtttagatgtcaagttacataggacaaatttccatttttgttttgtaacactacctgcaatgtgcttagtttgatgttttaaagttgttttccataaacctgtcactcatgcaccacaattttttttaaaagaaacattacaggattatatcaccaaactgcagccacaacattcaatattcatgaaggtgtgatagccctagcctaccttatcaagggagttcaagtagtcaacagctctctccctgttgatcagaaaggtttgctcgtccatttcaatgtttggtgatccccttaaataagtgaaaaaaaaattatttgttcgctcaactttatattgtatggactataaatttggaaatagttttttaagtgtttatcatttgctctggtcagggatgcttacttgccccaccacagatcatctgttgtttcatccttgacaacacgcttgtccctaggtgatcgaccggtctttgctcctgatagcgtcgctaacgccccactggatgtgatgaatgaccctttctcatatttgattgcatgctcataaagttctacacagcaaaaaaaaaaaaaaaaACacacagagagagaggttatgtaaagagaactcagcatagtaagatgtggattttctaaacctgtgtgcatgctaattagatgagacgtaagttgtaatgcatctatcattctatcaaattttcattgctgaaaaatatggattacatatagaagcaaataatagaaatagctttagggagtaaagtgaaccgtttttaatattttaggatgtaaaataagccaaaaaataatttaggagtttaagtactcgggtaaaataatttggatgtgtgtaccagaaggggataagttgtacagaacatgggtgaacttgaggtcactgtcgctcacagtgatcgtggggacagtgatatggtgttggtgatgtgtcacagccttgccagccatttcttttttccttgctgggtcaccgttgacgagttttggcccaatcccacatgtcatcgatgccaaagacgcactgtataattcattgtaaatatgcatagatgtcaatccatatgaaaatgatagccacatgtatttgttttacagaactaataaccacgtattggaattgattgaagtatcgaaattaatactttaagtataacagctgtatgcatgcttacatatgtatcgatattttcctcgtataaatgtgattcttaaaatggagaaaaattatcacaaatttcataagttcgttaagtcgcaatgaccacatgagagtcacaaacaggtactttctaggaacttaatgtgtgttactttagatataaaaactataacccttaaagaactgtgtaataaaagatataatggtataaataaattttgtgaaaaatcatcttatatcatttccaaataggaaaaatctaaacatgtgtacaataaatatcgtgccatagtttcaaagatattgcacatagttagcatatagttgacgaaatttaacaccatcttagaacatgtgtaccaacccgtctacgcaatcaaccatttatgctatactatcccttttaaaaaaaataaggaagaagatgcaggatatagttctaaaatgtatgttgctctctagttagtactaaatggtatgttggggtttgctacttcattggttttcataagcacactttacagactataaatggtatgtgtttttacaaaatcctttctatataaaagttacttttttaaaaaataaatctatttttcaaatttacaatagcgtgtactccctctgtcccataaaaaatcaatctgaacatatctctgtccagattcgttgtattacatccgatcctatattctttttttagaacggagggagtacttcattaattatatactaataatctcattttctgtatcagagaaaacagccccaacctcttttaaactcagccttagtcggacccaaatgatcatgcaaaacttccacgactacacaaccaattctgtacaattccgaccattttaaaccccagctcactgatcaccagacatacacccaaaaaaaattaattaacacatgtactgatgtacaattccattgatatttctaacaaaattaaatgaacggcatgatgtgcatgcagcaaacgggagcatcaaaatacatgacctgatggactgaagctgcagcctgtggcgatcctccactacctgaggcttcctctgcagcgagtgtagctcgtcgacagtgttcgccctcaccggtgtcgcgctgtcgtcgtggcacacgccgtcttcctccctcctgctgccgtatccgttcgtccccagccatgcttgcccgtctttcgcctccatcatttcgatcccttctgcaagagccaaaacaaacagaaacgaagcaactcaagaacagagtaatcgcttggtacaatcttatgatcgatcatatagtaatgggatgcttacagaaatggagcgagagtagagatgctgaagagagaaagactgaagttttcagaatgt

More
CDS seq

atgatggaggcgaaagacgggcaagcatggctggggacgaacggatacggcagcaggagggaggaagacggcgtgtgccacgacgacagcgcgacaccggtgagggcgaacactgtcgacgagctacactcgctgcagaggaagcctcaggtagtggaggatcgccacaggctgcagcttcagtccatcagtgcgtctttggcatcgatgacatgtgggattgggccaaaactcgtcaacggtgacccagcaaggaaaaaagaaatggctggcaaggctgtgacacatcaccaacaccatatcactgtccccacgatcactgtgagcgacagtgacctcaagttcacccatgttctgtacaacttatccccttctgaactttatgagcatgcaatcaaatatgagaaagggtcattcatcacatccagtggggcgttagcgacgctatcaggagcaaagaccggtcgatcacctagggacaagcgtgttgtcaaggatgaaacaacagatgatctgtggtggggcaagggatcaccaaacattgaaatggacgagcaaacctttctgatcaacagggagagagctgttgactacttgaactcccttgataaggtgtttgttaatgatcagttcctaaactgggaccccaacaataggataaaagttcgaatcatctctgcgagggcctaccattctctcttcatgcacaacatgtgcatccggccaacatacgaggaactagagaattttggcgagcccgacttcaccatctacaatgctggacagttcccgtgcaaccgttacacgcattacatgacatcgtcaactagcatagacttaaatcttaagcggagagaaatggtcatcctgggaacacaatatgctggagagatgaagaaaggcctcttcagtgtgatgcactacctcatgcccaaaaagcagatcctctcgttgcactctggctgcaacatgggcagagggggtgatgtagccctgttttttggattgtcaggtactggaaagacaactctgtcaacagacaggaataggatcttaattggtgatgatgaacactgctggagtgataatgtgttggagaatgttgttttcgatgagcactcccgtgaagttgattatacagaaaaatctgtcacagagaatacccgtgctgcttaccctattgaatacatagctaatgctaagataccatgtgttgggccacacccaaagaatgttatcctacttgcatgtgatgcatttggtgtcctccctcctgtcagcaagttgagccatgcacaaaccatgtaccattttatcagtggctacactgcattggtcgctggaactgaagatggtatcaaggagccacaggctacattttctgcctgctttggtgcagcttttataatgctccacccaactcggtacgctgccatgctggcagataagatgaacaagcatggagctaccggatggcttgtcaacactggttggatcgggggaagttatggtgtaggtgagcgaatcagcttggcctacacaaggaaaatcatcgatgccattcactcgggtgagcttttggctacaagctacaaaaagacagatgtctttggactagacatccccacaaaagtggaaggagttccatctgaattgcttgacccaataaatacctgggaagacaaagactcatacaagttgacacttctaaagctggcagatctgttcaagagaaatttcaaggtatttgcaaattacaagaaaggtggtgttagtgatctggctgatgagattgctgctgcaggaccaaatttctga

More
Protein seq

MMEAKDGQAWLGTNGYGSRREEDGVCHDDSATPVRANTVDELHSLQRKPQVVEDRHRLQLQSISASLASMTCGIGPKLVNGDPARKKEMAGKAVTHHQHHITVPTITVSDSDLKFTHVLYNLSPSELYEHAIKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTDDLWWGKGSPNIEMDEQTFLINRERAVDYLNSLDKVFVNDQFLNWDPNNRIKVRIISARAYHSLFMHNMCIRPTYEELENFGEPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLKRREMVILGTQYAGEMKKGLFSVMHYLMPKKQILSLHSGCNMGRGGDVALFFGLSGTGKTTLSTDRNRILIGDDEHCWSDNVLENVVFDEHSREVDYTEKSVTENTRAAYPIEYIANAKIPCVGPHPKNVILLACDAFGVLPPVSKLSHAQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTRYAAMLADKMNKHGATGWLVNTGWIGGSYGVGERISLAYTRKIIDAIHSGELLATSYKKTDVFGLDIPTKVEGVPSELLDPINTWEDKDSYKLTLLKLADLFKRNFKVFANYKKGGVSDLADEIAAAGPNF

Function Phosphoenolpyruvate carboxykinase (ATP) [UniProtKB/Swiss-Prot:Q9T074]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_10g0005610 OsLima_10g0005610.02 Chr10 8334464 8340085 - NAM
CDS seq

atgatggaggcgaaagacgggcaagcatggctggggacgaacggatacggcagcaggagggaggaagacggcgtgtgccacgacgacagcgcgacaccggtgagggcgaacactgtcgacgagctacactcgctgcagaggaagcctcaggtagtggaggatcgccacaggctgcagcttcagtccatcagtgcgtctttggcatcgatgacatgtgggattgggccaaaactcgtcaacggtgacccagcaaggaaaaaagaaatggctggcaaggctgtgacacatcaccaacaccatatcactgtccccacgatcactgtgagcgacagtgacctcaagttcacccatgttctgtacaacttatccccttctgaactttatgagcatgcaatcaaatatgagaaagggtcattcatcacatccagtggggcgttagcgacgctatcaggagcaaagaccggtcgatcacctagggacaagcgtgttgtcaaggatgaaacaacagatgatctgtggtggggcaagggatcaccaaacattgaaatggacgagcaaacctttctgatcaacagggagagagctgttgactacttgaactcccttgataaggtgtttgttaatgatcagttcctaaactgggaccccaacaataggataaaagttcgaatcatctctgcgagggcctaccattctctcttcatgcacaacatgtgcatccggccaacatacgaggaactagagaattttggcgagcccgacttcaccatctacaatgctggacagttcccgtgcaaccgttacacgcattacatgacatcgtcaactagcatagacttaaatcttaagcggagagaaatggtcatcctgggaacacaatatgctggagagatgaagaaaggcctcttcagtgtgatgcactacctcatgcccaaaaagcagatcctctcgttgcactctggctgcaacatgggcagagggggtgatgtagccctgttttttggattgtcaggtactggaaagacaactctgtcaacagacaggaataggatcttaattggtgatgatgaacactgctggagtgataatgtgttggagaatgttgttttcgatgagcactcccgtgaagttgattatacagaaaaatctgtcacagagaatacccgtgctgcttaccctattgaatacatagctaatgctaagataccatgtgttgggccacacccaaagaatgttatcctacttgcatgtgatgcatttggtgtcctccctcctgtcagcaagttgagccatgcacaaaccatgtaccattttatcagtggctacactgcattggtcgctggaactgaagatggtatcaaggagccacaggctacattttctgcctgctttggtgcagcttttataatgctccacccaactcggtacgctgccatgctggcagataagatgaacaagcatggagctaccggatggcttgtcaacactggttggatcgggggaaggtaa

More
Protein seq

MMEAKDGQAWLGTNGYGSRREEDGVCHDDSATPVRANTVDELHSLQRKPQVVEDRHRLQLQSISASLASMTCGIGPKLVNGDPARKKEMAGKAVTHHQHHITVPTITVSDSDLKFTHVLYNLSPSELYEHAIKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTDDLWWGKGSPNIEMDEQTFLINRERAVDYLNSLDKVFVNDQFLNWDPNNRIKVRIISARAYHSLFMHNMCIRPTYEELENFGEPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLKRREMVILGTQYAGEMKKGLFSVMHYLMPKKQILSLHSGCNMGRGGDVALFFGLSGTGKTTLSTDRNRILIGDDEHCWSDNVLENVVFDEHSREVDYTEKSVTENTRAAYPIEYIANAKIPCVGPHPKNVILLACDAFGVLPPVSKLSHAQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTRYAAMLADKMNKHGATGWLVNTGWIGGR

More
Gene Transcript Chromosome Start End Strand Source
OsLima_10g0005610 OsLima_10g0005610.01 Chr10 8334464 8340087 - NAM
CDS seq

atgatggaggcgaaagacgggcaagcatggctggggacgaacggatacggcagcaggagggaggaagacggcgtgtgccacgacgacagcgcgacaccggtgagggcgaacactgtcgacgagctacactcgctgcagaggaagcctcaggtagtggaggatcgccacaggctgcagcttcagtccatcagtgcgtctttggcatcgatgacatgtgggattgggccaaaactcgtcaacggtgacccagcaaggaaaaaagaaatggctggcaaggctgtgacacatcaccaacaccatatcactgtccccacgatcactgtgagcgacagtgacctcaagttcacccatgttctgtacaacttatccccttctgaactttatgagcatgcaatcaaatatgagaaagggtcattcatcacatccagtggggcgttagcgacgctatcaggagcaaagaccggtcgatcacctagggacaagcgtgttgtcaaggatgaaacaacagatgatctgtggtggggcaagggatcaccaaacattgaaatggacgagcaaacctttctgatcaacagggagagagctgttgactacttgaactcccttgataaggtgtttgttaatgatcagttcctaaactgggaccccaacaataggataaaagttcgaatcatctctgcgagggcctaccattctctcttcatgcacaacatgtgcatccggccaacatacgaggaactagagaattttggcgagcccgacttcaccatctacaatgctggacagttcccgtgcaaccgttacacgcattacatgacatcgtcaactagcatagacttaaatcttaagcggagagaaatggtcatcctgggaacacaatatgctggagagatgaagaaaggcctcttcagtgtgatgcactacctcatgcccaaaaagcagatcctctcgttgcactctggctgcaacatgggcagagggggtgatgtagccctgttttttggattgtcaggtactggaaagacaactctgtcaacagacaggaataggatcttaattggtgatgatgaacactgctggagtgataatgtgttggagaatgttgttttcgatgagcactcccgtgaagttgattatacagaaaaatctgtcacagagaatacccgtgctgcttaccctattgaatacatagctaatgctaagataccatgtgttgggccacacccaaagaatgttatcctacttgcatgtgatgcatttggtgtcctccctcctgtcagcaagttgagccatgcacaaaccatgtaccattttatcagtggctacactgcattggtcgctggaactgaagatggtatcaaggagccacaggctacattttctgcctgctttggtgcagcttttataatgctccacccaactcggtacgctgccatgctggcagataagatgaacaagcatggagctaccggatggcttgtcaacactggttggatcgggggaagttatggtgtaggtgagcgaatcagcttggcctacacaaggaaaatcatcgatgccattcactcgggtgagcttttggctacaagctacaaaaagacagatgtctttggactagacatccccacaaaagtggaaggagttccatctgaattgcttgacccaataaatacctgggaagacaaagactcatacaagttgacacttctaaagctggcagatctgttcaagagaaatttcaaggtatttgcaaattacaagaaaggtggtgttagtgatctggctgatgagattgctgctgcaggaccaaatttctga

More
Protein seq

MMEAKDGQAWLGTNGYGSRREEDGVCHDDSATPVRANTVDELHSLQRKPQVVEDRHRLQLQSISASLASMTCGIGPKLVNGDPARKKEMAGKAVTHHQHHITVPTITVSDSDLKFTHVLYNLSPSELYEHAIKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTDDLWWGKGSPNIEMDEQTFLINRERAVDYLNSLDKVFVNDQFLNWDPNNRIKVRIISARAYHSLFMHNMCIRPTYEELENFGEPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLKRREMVILGTQYAGEMKKGLFSVMHYLMPKKQILSLHSGCNMGRGGDVALFFGLSGTGKTTLSTDRNRILIGDDEHCWSDNVLENVVFDEHSREVDYTEKSVTENTRAAYPIEYIANAKIPCVGPHPKNVILLACDAFGVLPPVSKLSHAQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTRYAAMLADKMNKHGATGWLVNTGWIGGSYGVGERISLAYTRKIIDAIHSGELLATSYKKTDVFGLDIPTKVEGVPSELLDPINTWEDKDSYKLTLLKLADLFKRNFKVFANYKKGGVSDLADEIAAAGPNF

More
Gene Transcript Chromosome Start End Strand Source
OsLima_10g0005610 OsLima_10g0005610.03 Chr10 8334449 8336603 - IsoSeq
CDS seq

atgcaatcaagtttggcacagtgttggagaatgttgttttcgatgagcactcccgtgaagttgattatacagaaaaatctgtcacagagaatacccgtgctgcttaccctattgaat

Protein seq

MQSSLAQCWRMLFSMSTPVKLIIQKNLSQRIPVLLTLLN

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr10 8334963 8335763 - OsLima_10g0005610.02 OsLima_10g0005610.03,OsLima_10g0005610.01,OsLima_10g0005610.02 All

Expression

Leaf Root Panicle
FPKM 0.031632 6.861538 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_10g0204400 RBH 1.101321 0.576761 0.640526
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g13700 RBH 0.844830 0.486094 0.304640
Nipponbare | IRGSP 1.0 | RAP-db Os10g0204400 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0005690 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0005590 RBH 0.000000 4.977574 0.000000
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0005530 RBH 0.188256 0.686445 6.258861
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_10g0005860 RBH 0.0 0.046133 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0005530 RBH 0.0 18.946213 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_10G0125400 RBH 0.2360025 0.9128685 4.610118
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0005740 RBH 0.000000 0.000000 0.209453
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0130700 RBH 1.2212025 0.1650125 0.101631
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0011140 RBH 0.253357 1.075767 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0005660 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0005770 RBH 0.000000 20.231873 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0005520 RBH 0.061314 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_10g0005870 RBH 0.147037 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G005710 RBH 0.0 0.339605 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0005740 RBH 0.0 0.0 0.000000
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.