Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_10g0005530 | OGI:10024530 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr10:7496834-7502312 | ||||||||
| Gene Symbol | PEPCK, OsPEPCK | ||||||||||
| DNA seq | taaaaatttacactaaaataagtggtaccttgcgatacatcctcgaggaacataaaaaatcccttttatttggtatacattaagacatactactactattcaattaaaatcagaaatttggtcctgcagcagcaatctcatcagccagatcactaacaccacctttcttgtaatttgcaaataccttgaaatttctcttgaacagatctgacagctttagaagtgtcaacttgtatgagtctttgtcttcccactacatcatagttgaaaatggttggccaagctgcagcataaatcccatgcaaaaatatataatgttgaaattatggacttacggtatttattgggtcaagcaattcagatggaactccttccacttttgtggggatgtctagtccaaagacatctgtctttttgtagcttctagccaaaagctcacccgagtgaatggcatcgatgattttccttgtgtaggccaagctgattcgctcacctacaccataactgaacaaccacaaagtgtgacatagtatgtgggtaagtttgtctaggccaagattatgcaagtttttcttctgtgctttggaggtacgtatataccttttagtagaggtattatatctcttgatgattaataacaccatatacctctacctccaccatagatcagagctcatatttcaatattactatactcaaatggattaggtttgtcagaccatacattatatgtcctacttgagtgctataaattattatttaaatcacaagtttgaaattttgagatataaatccctaattgcaattcaaacaagcgtcatccttacaattctcgaagtacgtacttactctcgctaattagttgatgattttttttaatggaattcaatccagcctctacatcaaattagttgagtaatcatagtaaacataatatcagaaaaacaagtcaacagtttaatttaccttcccccgatccaaccagtgttgacaagccatccggtagctccatgcttgttcatcttatctgccagcatggcagcgtaccgagttgggtggagcattataaaagctgcaccaaagcaggcagaaaatgtagcctgtggctccttgataccatcttcagttccagcgacctacacattgccatatatagcaacacaagaactaagaccaatagttcctccaatagagattaaatctaataaactgtgtctaattaccaatgcagtgtagccactgataaaatggtacatggtttgtgcatggctcaacttgctgacaggagggaggacaccaaatgcatcacatgcaagtaggataacattctttgggtgtggcccaacacatggtatcttagcattagctatgtattcaatagggtaagcagcacgggtattctctgcagaacagattatgaatgtcatgaattaggtacaattttctgttagtgtcacatgctatattctataaggttattatacttcggaaaacatttacctgtgacagatttttctgtataatcaacttcacgggagtgctcatcgaaaacaacattctccaacactaaaagttgatcaacgagagtaattaagaaaagaagtaaaaataaatccaaagttgttgagttgataaattctgcaagtgaggtgcatatagaagaaggattttgatccctcgaggggatattctcttgttgtctgtatttcactcaaatggttatgaaaaaatttgaaaaaaaattaagaagatgtattaacatgtgaatttgtacttatatatttgtggagtgttatatcatatgttaatacaccttctcaatttttttttaaattttttcataaccatttaagtgacatgcaaagaacgagaggatatcctctctagggattaaaaaagtttcccggtgcatatacctgtgccaaacttgattgcatcccaaatgtcaggttctttctcctgagaaagatctatgcatttagcatagcagccgccctcaatgttagagataccattatcactccagcagtgttcatcatcaccaattaagatcctattcctgtctgttgacagagttgtctttccagtaccttgaagcatgcatatttagatagttactcacaagtaaaaacatatagtaattgccaatcaagaactatcttatcgcaaccattataaataattcagctacctgacaatccaaaaaacagggctacatcaccccctctgcccatgttgcagccagagtgcaacgagaggatctgctttttgggcatgaggtagtgcatcacactgaagaggcctttcttcatctctccagcatattgtgttcccaggatgaccatttctctccgcttaagatttaagtctatgctagttgacgatgtcatgtaatgcgtgtaacggttgcacgggaactgtccagcattgtagatggtgaagtcgggctcgccaaaattctctagttcctcgtatgttggccggatgcacctgtcatttacaaagaaaagtatttatatggaaacgcactaccagaatttgtactattctcaagtatcatgttgaataattggaatgacttgtaatatatagtaactactagaagcattaaagattgaaaattctggtagtactatttatgtttgagatacacgaaggcaaagtgaggatttacttatcttgttcagggtggcataaggagtgacctagaacagttcagagtattagaattgtctccatttgctggtacaaacatttgcacttacatgttgtgcatgaagagagaatggtaggccctcgcagagatgattcgaacttttatcctattgttggggtcccagtttaggaactgatcattaacaaacacctgtgacgaaattcatcattaaatacagtactatagtaacacattcaggtttagatgtcaagttacataggacaaatttccatttttgttttgtaacactacctgcaatgtgcttagtttgatgttttaaagttgttttccataaacctgtcactcatgcaccacaattttttttaaaagaaacattacaggattatatcaccaaactgcagccacaacattcaatattcatgaaggtgtgatagccctagcctaccttatcaagggagttcaagtagtcaacagctctctccctgttgatcagaaaggtttgctcgtccatttcaatgtttggtgatccccttaaataagtgaaaaaaaattatttgttcgctcaactttatattgtatggactataaatttggaaatagttttttaagtgtttatcatttgctctggtcagggatgcttacttgccccaccacagatcatctgttgtttcatccttgacaacacgcttgtccctaggtgatcgaccggtctttgctcctgatagcgtcgctaacgccccactggatgtgatgaatgaccctttctcatatttgattgcatgctcataaagttctacacagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacacagagagagagaggttatgtaaagagaactcagcatagtaagatgtggattttctaaacctgtgtgcatgctaattagatgagacgtaagttgtaatgcatctatcattctatcaaattttcattgctgaaaaatatggattacatatagaagcaaataatagaaatagctttacggagtaaagtgaaccgtttttaatattttaggatgtaaaataagccaaaaaataatttaggagtttaagtactcgggtaaaataatttggatgtgtgtaccagaaggggataagttgtacagaacatgggtgaacttgaggtcactgtcgctcacagtgatcgtggggacagtgatatggtgttggtgatgtgtcacagccttgccagccatttcttttttccttgctgggtcaccgttgacgagttttggcccaatcccacatgtcatcgatgccaaagacgcactgtataattcattgtaaatatgcatagatgtcaatccatatgaaaatgatagccacatgtatttgttttacagaactaataaccacgtattggaattgattgaagtatcgaaattaatactttaagtataacagctgtatgcatgcttacatatgtatcgatattttcctcgtataaatgtgattcttaaaatggagaaaaattatcacaaatttcataagttcgttaagtcgcaatgaccacatgagagtcacaaacaggtactttctaggaacttaatgtgtgttactttagatataaaaactataacccttaaagaactgtgtaataaaagatataatggtataaataaattttgtgaaaaatcatcttatatcatttccaaataggaaaaatctaaacatgtgtacaataaatatcgtgccatagtttcaaagatattgcacatagttagcatatagttgacgaaatttaacaccatcttagaacatatgtaccaacccgtctacgcaatcaaccatttatgctatactatcccttttaaaaaaaataaggaagaagatgcaggatatagttctaaaatgtatgttgctctctagttagtactaaatggtatgttggggtttgctacttcattggttttcataagcacactttacagactataaatggtatgtgtttttacaaaatcatttctatataaaagttacttttttaaaaaataaatttatttttcaaatttacaatagcgtgtactccctctgtcccataaaaaatcaatctgaacatatctctgtccagattcgttgtattacatccgatcctatattcttttttttagaacggagggagtacttcattaattatatactaataatctcattttccgtatcagagaaaacagccccaacctcttttaaactcagccttagtcggacccaaatgatcatgcaaaacttccacgactacacaaccaattctgtacaattccgaccattttaaaccccagctcactgatcaccagacatacacccaaaaaaaattaattaacacatgtactgatgtacaattccattgatatttctaacaaaattaaatgaacggcatgatgtgcatgcagcaaacgggagcatcaaaatacatgacctgatggactgaagctgcagcctgtggcgatcctccactacctgaggcttcctctgcagcgagtgtagctcgtcgacagtgttcgccctcaccggtgtcgcgctgtcgtcgtggcacacgccgtcttcctccctcctgctgccgtatccgttcgtccccagccatgcttgcccgtctttcgcctccatcatttcgatcccttctgcaagagccaaaacaaacagaaacgaagcaactcaagaacagagtaatcgcttggtacaatcttatgatcgatcatatagtaatgggatgcttacagaaatggagcgagagtagagatgctgaagagagaaagactgaagttttcagaat
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| CDS seq | atgatggaggcgaaagacgggcaagcatggctggggacgaacggatacggcagcaggagggaggaagacggcgtgtgccacgacgacagcgcgacaccggtgagggcgaacactgtcgacgagctacactcgctgcagaggaagcctcaggtagtggaggatcgccacaggctgcagcttcagtccatcagtgcgtctttggcatcgatgacatgtgggattgggccaaaactcgtcaacggtgacccagcaaggaaaaaagaaatggctggcaaggctgtgacacatcaccaacaccatatcactgtccccacgatcactgtgagcgacagtgacctcaagttcacccatgttctgtacaacttatccccttctgaactttatgagcatgcaatcaaatatgagaaagggtcattcatcacatccagtggggcgttagcgacgctatcaggagcaaagaccggtcgatcacctagggacaagcgtgttgtcaaggatgaaacaacagatgatctgtggtggggcaagggatcaccaaacattgaaatggacgagcaaacctttctgatcaacagggagagagctgttgactacttgaactcccttgataaggtgtttgttaatgatcagttcctaaactgggaccccaacaataggataaaagttcgaatcatctctgcgagggcctaccattctctcttcatgcacaacatgtgcatccggccaacatacgaggaactagagaattttggcgagcccgacttcaccatctacaatgctggacagttcccgtgcaaccgttacacgcattacatgacatcgtcaactagcatagacttaaatcttaagcggagagaaatggtcatcctgggaacacaatatgctggagagatgaagaaaggcctcttcagtgtgatgcactacctcatgcccaaaaagcagatcctctcgttgcactctggctgcaacatgggcagagggggtgatgtagccctgttttttggattgtcaggtactggaaagacaactctgtcaacagacaggaataggatcttaattggtgatgatgaacactgctggagtgataatgtgttggagaatgttgttttcgatgagcactcccgtgaagttgattatacagaaaaatctgtcacagagaatacccgtgctgcttaccctattgaatacatagctaatgctaagataccatgtgttgggccacacccaaagaatgttatcctacttgcatgtgatgcatttggtgtcctccctcctgtcagcaagttgagccatgcacaaaccatgtaccattttatcagtggctacactgcattggtcgctggaactgaagatggtatcaaggagccacaggctacattttctgcctgctttggtgcagcttttataatgctccacccaactcggtacgctgccatgctggcagataagatgaacaagcatggagctaccggatggcttgtcaacactggttggatcgggggaagttatggtgtaggtgagcgaatcagcttggcctacacaaggaaaatcatcgatgccattcactcgggtgagcttttggctagaagctacaaaaagacagatgtctttggactagacatccccacaaaagtggaaggagttccatctgaattgcttgacccaataaatacctgggaagacaaagactcatacaagttgacacttctaaagctgtcagatctgttcaagagaaatttcaaggtatttgcaaattacaagaaaggtggtgttagtgatctggctgatgagattgctgctgcaggaccaaatttc
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| Protein seq | MMEAKDGQAWLGTNGYGSRREEDGVCHDDSATPVRANTVDELHSLQRKPQVVEDRHRLQLQSISASLASMTCGIGPKLVNGDPARKKEMAGKAVTHHQHHITVPTITVSDSDLKFTHVLYNLSPSELYEHAIKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTDDLWWGKGSPNIEMDEQTFLINRERAVDYLNSLDKVFVNDQFLNWDPNNRIKVRIISARAYHSLFMHNMCIRPTYEELENFGEPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLKRREMVILGTQYAGEMKKGLFSVMHYLMPKKQILSLHSGCNMGRGGDVALFFGLSGTGKTTLSTDRNRILIGDDEHCWSDNVLENVVFDEHSREVDYTEKSVTENTRAAYPIEYIANAKIPCVGPHPKNVILLACDAFGVLPPVSKLSHAQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTRYAAMLADKMNKHGATGWLVNTGWIGGSYGVGERISLAYTRKIIDAIHSGELLARSYKKTDVFGLDIPTKVEGVPSELLDPINTWEDKDSYKLTLLKLSDLFKRNFKVFANYKKGGVSDLADEIAAAGPNF |
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| Function | Phosphoenolpyruvate carboxykinase (ATP) [UniProtKB/Swiss-Prot:Q9T074] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_10g0005530 | OsCMeo_10g0005530.01 | Chr10 | 7496834 | 7502312 | - | NAM | ||
| CDS seq | atgatggaggcgaaagacgggcaagcatggctggggacgaacggatacggcagcaggagggaggaagacggcgtgtgccacgacgacagcgcgacaccggtgagggcgaacactgtcgacgagctacactcgctgcagaggaagcctcaggtagtggaggatcgccacaggctgcagcttcagtccatcagtgcgtctttggcatcgatgacatgtgggattgggccaaaactcgtcaacggtgacccagcaaggaaaaaagaaatggctggcaaggctgtgacacatcaccaacaccatatcactgtccccacgatcactgtgagcgacagtgacctcaagttcacccatgttctgtacaacttatccccttctgaactttatgagcatgcaatcaaatatgagaaagggtcattcatcacatccagtggggcgttagcgacgctatcaggagcaaagaccggtcgatcacctagggacaagcgtgttgtcaaggatgaaacaacagatgatctgtggtggggcaagggatcaccaaacattgaaatggacgagcaaacctttctgatcaacagggagagagctgttgactacttgaactcccttgataaggtgtttgttaatgatcagttcctaaactgggaccccaacaataggataaaagttcgaatcatctctgcgagggcctaccattctctcttcatgcacaacatgtgcatccggccaacatacgaggaactagagaattttggcgagcccgacttcaccatctacaatgctggacagttcccgtgcaaccgttacacgcattacatgacatcgtcaactagcatagacttaaatcttaagcggagagaaatggtcatcctgggaacacaatatgctggagagatgaagaaaggcctcttcagtgtgatgcactacctcatgcccaaaaagcagatcctctcgttgcactctggctgcaacatgggcagagggggtgatgtagccctgttttttggattgtcaggtactggaaagacaactctgtcaacagacaggaataggatcttaattggtgatgatgaacactgctggagtgataatgtgttggagaatgttgttttcgatgagcactcccgtgaagttgattatacagaaaaatctgtcacagagaatacccgtgctgcttaccctattgaatacatagctaatgctaagataccatgtgttgggccacacccaaagaatgttatcctacttgcatgtgatgcatttggtgtcctccctcctgtcagcaagttgagccatgcacaaaccatgtaccattttatcagtggctacactgcattggtcgctggaactgaagatggtatcaaggagccacaggctacattttctgcctgctttggtgcagcttttataatgctccacccaactcggtacgctgccatgctggcagataagatgaacaagcatggagctaccggatggcttgtcaacactggttggatcgggggaagttatggtgtaggtgagcgaatcagcttggcctacacaaggaaaatcatcgatgccattcactcgggtgagcttttggctagaagctacaaaaagacagatgtctttggactagacatccccacaaaagtggaaggagttccatctgaattgcttgacccaataaatacctgggaagacaaagactcatacaagttgacacttctaaagctgtcagatctgttcaagagaaatttcaaggtatttgcaaattacaagaaaggtggtgttagtgatctggctgatgagattgctgctgcaggaccaaatttc
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| Protein seq | MMEAKDGQAWLGTNGYGSRREEDGVCHDDSATPVRANTVDELHSLQRKPQVVEDRHRLQLQSISASLASMTCGIGPKLVNGDPARKKEMAGKAVTHHQHHITVPTITVSDSDLKFTHVLYNLSPSELYEHAIKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTDDLWWGKGSPNIEMDEQTFLINRERAVDYLNSLDKVFVNDQFLNWDPNNRIKVRIISARAYHSLFMHNMCIRPTYEELENFGEPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLKRREMVILGTQYAGEMKKGLFSVMHYLMPKKQILSLHSGCNMGRGGDVALFFGLSGTGKTTLSTDRNRILIGDDEHCWSDNVLENVVFDEHSREVDYTEKSVTENTRAAYPIEYIANAKIPCVGPHPKNVILLACDAFGVLPPVSKLSHAQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTRYAAMLADKMNKHGATGWLVNTGWIGGSYGVGERISLAYTRKIIDAIHSGELLARSYKKTDVFGLDIPTKVEGVPSELLDPINTWEDKDSYKLTLLKLSDLFKRNFKVFANYKKGGVSDLADEIAAAGPNF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.188256 | 0.686445 | 6.258861 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0204400 | RBH | 1.101321 | 0.576761 | 0.640526 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g13700 | RBH | 0.844830 | 0.486094 | 0.304640 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0204400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0005690 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005590 | RBH | 0.000000 | 4.977574 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0005860 | RBH | 0.0 | 0.046133 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0005530 | RBH | 0.0 | 18.946213 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0125400 | RBH | 0.2360025 | 0.9128685 | 4.610118 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0005740 | RBH | 0.000000 | 0.000000 | 0.209453 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0130700 | RBH | 1.2212025 | 0.1650125 | 0.101631 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0005610 | RBH | 0.031632 | 6.861538 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0005660 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0005770 | RBH | 0.000000 | 20.231873 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0005520 | RBH | 0.061314 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0005870 | RBH | 0.147037 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G005710 | RBH | 0.0 | 0.339605 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0005740 | RBH | 0.0 | 0.0 | 0.000000 |
