Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0004820 | OGI:10020000 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:6657363-6664443 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgttgacgacgttcgtctaccatgctctaggctcgttctcctgtgtttgcctcctttgttttgccagctcgttggtgagtgtagctgacgcaggcggcgcacccgtgctgcaagcgttggagtgcacctcgacggccgccggcaactacacgcaggatggcgcgtacgccgccaaccttggccgcttgctcgccatgctcccgaacgagaccgtgtccaagaacggtggcttcttcaacggcacggtcggcaacggcacggccaccgtgtacggcctcgccatgtgcgccgccgacttcagccgcgccgactgcatggactgcctcgtcgccgctgggatcagcgcgggaggcgtcgtgaaacgttgccccggcagcaccacggtctccgccatgttcgaccagtgcctcctccgctactccgacagtagcttcttcggcacagcccatatcagtacgcaactacgcatagtatattttcagtaattttatcatatttaagaagtgatcgggggtagagtataaaatataataacctcgaggtatcaaaattttaatataaactttttagataacctgagatattttctcaagtattgtaaaattttttttttatattatacaactattgcatgccgccgttgaacgattatacacgttattatgcatgtatatatgcagatataacatacgtttcggacggggagatcttgaccggcaggcggcgagctcgccggcgcggttcgcggtgagcgagacgaacccgtacacgctggcgcagtgtgttagacttaatcttgtcgtttgtgttttttcatcctatcaagtcgtgtttagctaattagtggtttgtgtccatgttaatctttccatgtgtgtgtactgagcagtgagcaggtcaatagtatgtgtgatttagtttgatcagggaggccatgatctgcatgcaagtgaagcatggattcttggcgagaagactggatcagatggctcatgcatgtgttggttagtgatttagtggtgctctgcatgcagcgagttgtgccttgcatgtgggatgcatgcagcgagttgtgccttgcatgtaggaaggtgattagaggataatccgcgggaggtgcttgccggtttgtgcggcaagacgtggcttaacctgtgcgtgtgtgtggtctatttaaccaatgtaatcagcatttgttaaagtgtgccaaaagtgaagtgaaaaacaagtgtttgtgctgtgcgcgctggtgtgcagcgtggaaattccttgcgtactgttcatcttcttcctccgttagttcatcatctgtgtgtgtgtgtttcatcaagtgagaaagagagaggtgtgtgtgcgagtgagtgtttgggctgacacagtgcacctgggacctgccgcccgacgcgtgcaagggctgcctggacgccctggcggccaacgtctcggccacgttcccggcgacggcgcgcggcgagcgcaagagctacagctgccgcgtccggtacgacgtcaacaccagtttcatggtggtgcccttcaatctgagcactggcagtgcgggtacaccgacgtcgtcgctggcaggtcctggatccgtgaattctgccaagaacaacggtcagtacgatgttactttcctgctcggcgatgacttttggaataagtttaaatatttgtattatttaaaaattttatataaatatactatgtataagtcaactaaaagtttcttgataaaataagtcaaaacaaaataaataaatatttttaaaaataagatgaatgacaaaacatcatgataaaaatcaaccgttttatcaaaaaaaaggagcgagtacacagaatgaatatgttgtaatatgaaagtaaataagaagtagttggtaaaaaatatataaaaaggggaaaagtctaaatacccccctaaatttagatagaagtccgtgtagcatcctgaactttaaaaccggacatccaattccaaccccggccctgatccttgcaaaatcgttcatattaccgctaaggtggttttgtatagtagtttttctgtaatttgtatataatttggacgagtttgaacacatgacatacacattagacatatatattaaaaccttcatttaaattttcttttaatcacttgttagctctcacttataaacaagtctcaacataatagtatggtatctccgtataagtatgaattgattacttataattgatgatatgcagatatgttatattagttatttaaaattgttcgtttaagtttctaaaataagcaaaaccaccatctaaaaccatcttagtgggtaatatgaacggttttacaaagttcaggagattagatgtcctgttttaaagtttcgggtgttatatggattttcatccaaagtttagaagggtatttggactttttcctaaaattcactatagccttattttagaagagtataagtgtgacaaatttaagctaaaaatatttcaactggttttcatatataaatatcaggaaaaaaattctatgcggcagcgccgcaccaagcttctcgtgccgcaccgcgcgaactgccgacgcgtgtccatctgccgcccgcgagccgcgtctatcgcaattttcgttggagccgagccgatgcctttcgcgacgagtccaagccgcaggcccacaccttaaagtcgaatcgtcgctctcatctgctatggcgacgacggtggcggcggctgctactgcttctgaaacggcggcggcgcaccgtaagggttccccttgctgctctcctcggacttgagtcccccctacagcgggcgatggcgcgtcggcgcaaggccgcgaggcagcagccgataggcaggtggacagcggagcgtcagtgcggctgcgcgagccgcgagtagcaggccggcggcagcgtggcacctcgggagcacgtgagtaggagtagcagtgcaccaggagtccgtaaaaaatagaatatgatatagtgatagtagaaaaagattaaaaaaaggagcaatgatataaagattagaaatatatgaaattcatcatttccatggtgaagaataaagtacagaccaaatttataaataatgaatggcttatgcatactcactacacgtatgcacgtcacatcctaatcaacatcacttcgtaaaattaacattaccaagttattttggtcctcgttcgcacgaactagaaaggttcgtgtactgaaatgagcattttacaagtttatgtactaattaaattacacccacctaacaagtttgtgtaccaccaatgtaatttactcttttacttaatttcagctctttttttctttatgtgcttactatatcctacttatgtaaacatgtttccatcttgccaagcccctcttccaacttgtgaattaattacttttaatctttatacagtgtgtattacaaacttacattgtaattattaaaattacaatgtaattttttcaagttacagtgagcaccgtaaatacagtcccaaaactaatgctaggaaggatgtcaatctctcgtacgtcctaagatctgggcaaaataacttgagtcaacaagcttttttttttattcaaaccttgcagttattgcttttttaattgaactttcaagctaattaaaacgaggtaatttttcatctagttcttatacaacatattctattaaaattctaataattaatgacaatagttcaagctgcacaaccataaataaatacaaaattccctacatgcccccaaaaatttcatgctatcgcttctacaccccgagatatgcttgatcttatgtaccccagatttcttgttttaatcctttacatgtccattccagtaattgaccaagagttgaccacttgtttcattaaaatgattaaaagtgagaaattttttaagtgggaattgtttgagttatggaaaatagtaaggggcaaatcaccgaaatcatttatatttcaaaattttgtggaactttgcatcaaatttgaaaattaacttttgaatgagtattcggtttgaaaaatgtgaattttgacaatcatgtattcaccttcgattactattatcatctgatgcaaaatttgtcaactttttttgaatacttaaacaccactttttaaattaattaaaagtttcaaaaaaaatagtcaatgtatatttcatacactaataatttttaccgttcaacatctgtcactgtgtggtataacctcggagcaataaggatgttttatgaatatttaatgttccattgacgacaactgataatcaatatggtatcagaataatagtttttgagtttgaatcttggctggcacacaactaaaaaaaattacatcccatttttattccatgcaagaggccagctaagggaggctccgtgtgattggaagtgtttgttgttttcttatcagcttgagatttttgtcaaatatggttgatgcatgtaacataatactatatgtacattctgttaaatttcaatttatgacaataattcatgttgcacccacacaaagtatttcattattcctgacctctggataagatttggaattttaatgtactgttttaattacagggccggtgatgattggatccattgttgctgcagtcgtttttgtggtcctcgtttcagttgttgtttggctttgcgtcaggcatagagccatcaagaaggttgcactgggtatgtacagttcttatcgttctaccgaactagcacatatagactacagatatactcgttatactacagataaaaaacacaagctggaaacaggggacggccccctccaacaattttttccacagataatcatttaactaactagataattaacttaagtaatagtgtattaggcccctttccaaacacccttggggccattgcctggaaacatagaatggtcacacgatatatatgatgcatctatttgttgcagctggtccaagatcatactcctacgaggaattgtacactgcaacaaatggtttttcagatgaacgaaagttgggccagggtgcgtttggtgctgtgtaccggggagtcctgtcagatccatctcagactcttgtggccgtcaagaaaattcagaggatgtctgaagcagcgtggcaggaattcgtggcagagataaccattgttacccagcttaagcatcggaatatcgtggacctgatgggctggtgcgacgacggtaacaatcctttgcttgtctacgaactgatggaccgtaaccttgattaccacctttaccctccacaacgcatgggggaaagtgaagttgtgctagactggaagaaaaggtaatgaagatcatagatgccctgtctcgtctgctaaggaattattttaattaagcctttttaagttagtagaattcattccagcctttgctttaaataagaaataagcgattattaaagatcttgcagaataaacaactgcacattgaaaaatcacagactacttagaatagaacctaaagatagagattttcgatctacagcgagattattgtcttaattactcccgtcatttccgtttaattgtcaccattttgctccagcttaactatgacaaacatgtactaattacagtagatgtaggacagtatatggaactttagtttaatgaattattgatggcaaactaagcacatctactgtaattatagaagtgattgatgggtaggagtggtgggcgtgtttagttcgattaatatgaaccgatatttgttttaaaatatacgagagtaaaattgaaaactgtattttgagttaaaaacagagtgagcaatatgaacaatatatcaaactatcatcactgtaagttctatagtaatatcatgtggcgcacatcagcatgaaacaagatattagggatgttcttacctgcttcctctcttcaagtgtaatgctaatgatttaacaattttagaatgtgtagcctggcccatcatgaatagaaccgtccacctcacattataagggttgcaaacccaaattttagatgctagaacatcacaactagcttgatagatgacgaccatgcatttcacaattgttgggcatagtgtcctcacggagaactatggataacgttattgttgtcctcatggcttgctatcacgaaagcacctgaattcgtaacatcccattccagttggcacttccgtgacggcagctatcagggttaagtagtcatatgcctaattcatatcttttttggaacctggaagtagtcatatgcctaattcatatgcctaagtagtcatatgcctacggccgagtttagttccaaattttttcttcaaactttcaactttttctatcacatcaaaacttttttacacacacaaactttcaacttttccatcacatcgtttcaatttcaaccaaactttcaattttagcgtaaactaaacacacccgtattcatatgcttaatccagaTttttttttttttggaaccgctttcttgcttagtaaaaatatgctatatattttgtgtgtgacaggtacaatataatactcgacatggcgaatggtctccagtacctgcacaccgcgcgtaacgaatgtgtcctgcatcgcgacatcaagccaagcaacgtgatgctcgacgagaacctcagctgcgcgaagctgtgcgactttgggctggtgaaacaaatcaaccatgacgaagtgaccccaggccggcagacaaccgtgattggtacacggagctatctcgacccggaatgcatcaggacgtcgatagtaagcgcggcttcagacgtctacagcttcggtttggtcctgctcgagatcgcgtgtggccggcagccgaccatgctagctgcagcatggccacaacaacaagaacagcctcgtcgagtgggtacaggactcgttccgccacaggaaatcagtcgccgatatggcagacgagaggctgaagggtgatttcgatgaggagcagattgagcgggtgatccgggttgggttcctgtgtgtgcttccggagcctgacaagcggccggacatggcgacggtggtggggactacctga
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| CDS seq | atgttgacgacgttcgtctaccatgctctaggctcgttctcctgtgtttgcctcctttgttttgccagctcgttggtgagtgtagctgacgcaggcggcgcacccgtgctgcaagcgttggagtgcacctcgacggccgccggcaactacacgcaggatggcgcgtacgccgccaaccttggccgcttgctcgccatgctcccgaacgagaccgtgtccaagaacggtggcttcttcaacggcacggtcggcaacggcacggccaccgtgtacggcctcgccatgtgcgccgccgacttcagccgcgccgactgcatggactgcctcgtcgccgctgggatcagcgcgggaggcgtcgtgaaacgttgccccggcagcaccacggtctccgccatgttcgaccaatataacatacgtttcggacggggagatcttgaccggcaggcggcgagctcgccggcgcggttcgcggtgagcgagacgaacccgtacacgctggcgcagtgttgcacctgggacctgccgcccgacgcgtgcaagggctgcctggacgccctggcggccaacgtctcggccacgttcccggcgacggcgcgcggcgagcgcaagagctacagctgccgcgtccggtacgacgtcaacaccagtttcatggtggtgcccttcaatctgagcactggcagtgcggggccggtgatgattggatccattgttgctgcagtcgtttttgtggtcctcgtttcagttgttgtttggctttgcgtcaggcatagagccatcaagaaggttgcactggctggtccaagatcatactcctacgaggaattgtacactgcaacaaatggtttttcagatgaacgaaagttgggccagggtgcgtttggtgctgtgtaccggggagtcctgtcagatccatctcagactcttgtggccgtcaagaaaattcagaggatgtctgaagcagcgtggcaggaattcgtggcagagataaccattgttacccagcttaagcatcggaatatcgtggacctgatgggctggtgcgacgacggtaacaatcctttgcttgtctacgaactgatggaccgtaaccttgattaccacctttaccctccacaacgcatgggggaaagtgaagttgtgctagactggaagaaaagcctcgtcgagtgggtacaggactcgttccgccacaggaaatcagtcgccgatatggcagacgagaggctgaagggtgatttcgatgaggagcagattgagcgggtgatccgggttgggttcctgtgtgtgcttccggagcctgacaagcggccggacatggcgacggtggtggggactacctga
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| Protein seq | MLTTFVYHALGSFSCVCLLCFASSLVSVADAGGAPVLQALECTSTAAGNYTQDGAYAANLGRLLAMLPNETVSKNGGFFNGTVGNGTATVYGLAMCAADFSRADCMDCLVAAGISAGGVVKRCPGSTTVSAMFDQYNIRFGRGDLDRQAASSPARFAVSETNPYTLAQCCTWDLPPDACKGCLDALAANVSATFPATARGERKSYSCRVRYDVNTSFMVVPFNLSTGSAGPVMIGSIVAAVVFVVLVSVVVWLCVRHRAIKKVALAGPRSYSYEELYTATNGFSDERKLGQGAFGAVYRGVLSDPSQTLVAVKKIQRMSEAAWQEFVAEITIVTQLKHRNIVDLMGWCDDGNNPLLVYELMDRNLDYHLYPPQRMGESEVVLDWKKSLVEWVQDSFRHRKSVADMADERLKGDFDEEQIERVIRVGFLCVLPEPDKRPDMATVVGTT |
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| Function | Cysteine-rich receptor-like protein kinase 11 [UniProtKB/Swiss-Prot:Q9ZP16] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0004820 | OsLima_10g0004820.01 | Chr10 | 6657363 | 6664443 | + | NAM | ||
| CDS seq | atgttgacgacgttcgtctaccatgctctaggctcgttctcctgtgtttgcctcctttgttttgccagctcgttggtgagtgtagctgacgcaggcggcgcacccgtgctgcaagcgttggagtgcacctcgacggccgccggcaactacacgcaggatggcgcgtacgccgccaaccttggccgcttgctcgccatgctcccgaacgagaccgtgtccaagaacggtggcttcttcaacggcacggtcggcaacggcacggccaccgtgtacggcctcgccatgtgcgccgccgacttcagccgcgccgactgcatggactgcctcgtcgccgctgggatcagcgcgggaggcgtcgtgaaacgttgccccggcagcaccacggtctccgccatgttcgaccaatataacatacgtttcggacggggagatcttgaccggcaggcggcgagctcgccggcgcggttcgcggtgagcgagacgaacccgtacacgctggcgcagtgttgcacctgggacctgccgcccgacgcgtgcaagggctgcctggacgccctggcggccaacgtctcggccacgttcccggcgacggcgcgcggcgagcgcaagagctacagctgccgcgtccggtacgacgtcaacaccagtttcatggtggtgcccttcaatctgagcactggcagtgcggggccggtgatgattggatccattgttgctgcagtcgtttttgtggtcctcgtttcagttgttgtttggctttgcgtcaggcatagagccatcaagaaggttgcactggctggtccaagatcatactcctacgaggaattgtacactgcaacaaatggtttttcagatgaacgaaagttgggccagggtgcgtttggtgctgtgtaccggggagtcctgtcagatccatctcagactcttgtggccgtcaagaaaattcagaggatgtctgaagcagcgtggcaggaattcgtggcagagataaccattgttacccagcttaagcatcggaatatcgtggacctgatgggctggtgcgacgacggtaacaatcctttgcttgtctacgaactgatggaccgtaaccttgattaccacctttaccctccacaacgcatgggggaaagtgaagttgtgctagactggaagaaaagcctcgtcgagtgggtacaggactcgttccgccacaggaaatcagtcgccgatatggcagacgagaggctgaagggtgatttcgatgaggagcagattgagcgggtgatccgggttgggttcctgtgtgtgcttccggagcctgacaagcggccggacatggcgacggtggtggggactacctga
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| Protein seq | MLTTFVYHALGSFSCVCLLCFASSLVSVADAGGAPVLQALECTSTAAGNYTQDGAYAANLGRLLAMLPNETVSKNGGFFNGTVGNGTATVYGLAMCAADFSRADCMDCLVAAGISAGGVVKRCPGSTTVSAMFDQYNIRFGRGDLDRQAASSPARFAVSETNPYTLAQCCTWDLPPDACKGCLDALAANVSATFPATARGERKSYSCRVRYDVNTSFMVVPFNLSTGSAGPVMIGSIVAAVVFVVLVSVVVWLCVRHRAIKKVALAGPRSYSYEELYTATNGFSDERKLGQGAFGAVYRGVLSDPSQTLVAVKKIQRMSEAAWQEFVAEITIVTQLKHRNIVDLMGWCDDGNNPLLVYELMDRNLDYHLYPPQRMGESEVVLDWKKSLVEWVQDSFRHRKSVADMADERLKGDFDEEQIERVIRVGFLCVLPEPDKRPDMATVVGTT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0184871 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g10540 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0184871 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0005240 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0004740 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0004660 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0005020 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0004770 | RBH | 0.0 | 0.000000 | 0.712856 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0099600 | RBH | 0 | 0.0568105 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0004950 | RBH | 0.0 | 0.0 | 0.026410 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0110500 | RBH | 0 | 0.025334 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0004560 | SBH | 0.082289 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0004820 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0004990 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0004720 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0005100 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G004890 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0004940 | RBH | 0.0 | 0.000000 | 0.0 |
