Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0003460 | OGI:10013980 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:4683979-4686955 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | attgcatagtcccatttcccaaaaatcccaactgagcatttctcaaatctccggttctccaatttccgaaggttgtcaggcaccatggcggagatgatcgccgtctccctctcggcaaaggttgccggcgcgctgtcgagacccgtggccatcaagctctgctctctcgccgggattccctcaggcatcagggcggcggcgcaagacctcgagctcctccgcgccttcctccgcttcgtcgacacccggcacggcggcggcgacgcgctcgctgaccaggtatgcgacgttgccttcgaactcgaggacgtcgcggacgagtacaccttcctctccggccacacctccttgcgccgccgctgcgctaacgtagccgcctggctcacgctctccaggcggctgcgagtggcgcgggagaggctccgcgagctctcggccaccaaggagcagtacggcatccgtcctgctgcccaggcctccatctcggctgctgctggtgaaggcgaagaccccgtggcggtcatcggccggaggctagcagagaggtcacacttcgtagaggaggatgagatcgttggtttcgcggcgcatacaaggttactgatgaaatggctgaccggggatgctgatccccagcgtatgcggctcttagtctgtggcatgggcggagttggcaagacaactcttgtcacaaacgtgtacaagaaagttgctgcgagctcccactttgattgccacgcgtgggtcactgtctccaagagcttcacgacggaagacctccttcgaagaatcgccaaggagtttcaccgggacgtccttgccggcatgccgtgggacgtggacaagatgaactaccggtcactggtcgaggctttgcgtgggcacctctccaacaagaaatacttgcttgtgctggatgatgtctgggatgcacgtgcgtggtacgagatccgcgaagcttttgccgatgatggaacagggagccggataatcatcaccacacgcagtcaagaggtcgcttctctggcatcatccgacaagatcatcaggttagagccgctctctgagcaggaagcatggtccttgttttgtaaaaccacgttcaaggaagacgcagaccaggaatgcccaaatcaactgaagcatttggctactaagattcttgaaagatgctatggtctgccattggccattatatctgttggtaatctgctcgcgttgaaggagagaacattgtttgcctggaagaacgtccatgacagccttgtgtggtatggaagcagtgaccatggaattggtcaagtgtcaagcatactgaatctgagcattgatgatctgccacaccacctcaagatatgtcttatgtattgcaatatatacccggaggatttcttgctaaaaaggaagatcctgatcaggaagtggatagctgaaggtttgattgaggaaaaggtgcagggcacaatggaggaggttgcagatgattacctgaaccagttagtgcaacgtagcctgttgcatgtcgtactgcacaacgagtttggacgtgccaagctatgccgtattcacgacctgatcagggaattgattgttcacaggtcaacaaaggagagattgtttgtagtctcaaagcgcacagtgacattagagccaagcagaaaagctcgccatgttgtactcgaccaatgtacaagtgattatctgccagttcttaagacagcatcgcttcgttccttccaagcattcaggtcagatttcgatgtttcactcttgtctggctttaggttattaaccatgctgaacttatggctcattcagatacataaactacctagcacagtggccaatcttgttaatctgcggtatcttggaatccgttccactctaattgaagagctcccacgggagttgggtcaattacaaaacctacaaactttggatgctaagtggtccatggtacagagattaccaaaaagcataacaaagctcaagaacctgcgtcacctgatactgtttagacggcaatctgcagatatcacttttggagtcccttgtacagcgattccagttccagtggggcttgaaaatatgacctgccttcagactcttaagtacattaaagctgatgagaagatgattaagtccttggggagcttgaagcagatgagaagcttagagctatccggtgtggatgacagcaatcttcttcatttgccatcatccatctccaaaatgagctgccttctgcgcttgggaattatcactagggatgccaatgttgaattggacatggaaccatttaatcctacaccgtctaagctacagaaacttaatttacaaggtaggttagtaagaggtaatttaccttcattgtttggctcccttaataacctcatgcagttgcagctgcattcatctgatctcaaggaagattctattggactactctcttatctccccaggctattacatctaagcctcatcaatgcatacaatgggaggagcttgacctttatagatggttcttttccagcgcttaagaaactaagcttgcatggcctgcctaatctttctcacctagagtttcagaaagggagtcttgtggatctacgtgagctgatgcttggccgatgcgttcagctaactgaaataccccaaggtattgagaacctcactcatcttgagaagatggatctttttgaacagccaactgtgttaatccagcagatacagaatggggaagtattacaggagcatcgtcaccaagactccaatcagtggcggagccaggaattttgtaaagcctgggcagtgaacaagcttgactgaaaaccattataatcaaatatgtaagcctaaactaaaaccactacaatccaatactggttatgtgtttatgtgctgaaattgtcattgaagtttagaaaataacacttctgttcaatattaaggccaagtcattcaagagcataattga
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| CDS seq | atggcggagatgatcgccgtctccctctcggcaaaggttgccggcgcgctgtcgagacccgtggccatcaagctctgctctctcgccgggattccctcaggcatcagggcggcggcgcaagacctcgagctcctccgcgccttcctccgcttcgtcgacacccggcacggcggcggcgacgcgctcgctgaccaggtatgcgacgttgccttcgaactcgaggacgtcgcggacgagtacaccttcctctccggccacacctccttgcgccgccgctgcgctaacgtagccgcctggctcacgctctccaggcggctgcgagtggcgcgggagaggctccgcgagctctcggccaccaaggagcagtacggcatccgtcctgctgcccaggcctccatctcggctgctgctggtgaaggcgaagaccccgtggcggtcatcggccggaggctagcagagaggtcacacttcgtagaggaggatgagatcgttggtttcgcggcgcatacaaggttactgatgaaatggctgaccggggatgctgatccccagcgtatgcggctcttagtctgtggcatgggcggagttggcaagacaactcttgtcacaaacgtgtacaagaaagttgctgcgagctcccactttgattgccacgcgtgggtcactgtctccaagagcttcacgacggaagacctccttcgaagaatcgccaaggagtttcaccgggacgtccttgccggcatgccgtgggacgtggacaagatgaactaccggtcactggtcgaggctttgcgtgggcacctctccaacaagaaatacttgcttgtgctggatgatgtctgggatgcacgtgcgtggtacgagatccgcgaagcttttgccgatgatggaacagggagccggataatcatcaccacacgcagtcaagaggtcgcttctctggcatcatccgacaagatcatcaggttagagccgctctctgagcaggaagcatggtccttgttttgtaaaaccacgttcaaggaagacgcagaccaggaatgcccaaatcaactgaagcatttggctactaagattcttgaaagatgctatggtctgccattggccattatatctgttggtaatctgctcgcgttgaaggagagaacattgtttgcctggaagaacgtccatgacagccttgtgtggtatggaagcagtgaccatggaattggtcaagtgtcaagcatactgaatctgagcattgatgatctgccacaccacctcaagatatgtcttatgtattgcaatatatacccggaggatttcttgctaaaaaggaagatcctgatcaggaagtggatagctgaaggtttgattgaggaaaaggtgcagggcacaatggaggaggttgcagatgattacctgaaccagttagtgcaacgtagcctgttgcatgtcgtactgcacaacgagtttggacgtgccaagctatgccgtattcacgacctgatcagggaattgattgttcacaggtcaacaaaggagagattgtttgtagtctcaaagcgcacagtgacattagagccaagcagaaaagctcgccatgttgtactcgaccaatgtacaagtgattatctgccagttcttaagacagcatcgcttcgttccttccaagcattcaggtcagatttcgatgtttcactcttgtctggctttaggttattaaccatgctgaacttatggctcattcagatacataaactacctagcacagtggccaatcttgttaatctgcggtatcttggaatccgttccactctaattgaagagctcccacgggagttgggtcaattacaaaacctacaaactttggatgctaagtggtccatggtacagagattaccaaaaagcataacaaagctcaagaacctgcgtcacctgatactgtttagacggcaatctgcagatatcacttttggagtcccttgtacagcgattccagttccagtggggcttgaaaatatgacctgccttcagactcttaagtacattaaagctgatgagaagatgattaagtccttggggagcttgaagcagatgagaagcttagagctatccggtgtggatgacagcaatcttcttcatttgccatcatccatctccaaaatgagctgccttctgcgcttgggaattatcactagggatgccaatgttgaattggacatggaaccatttaatcctacaccgtctaagctacagaaacttaatttacaaggtaggttagtaagaggtaatttaccttcattgtttggctcccttaataacctcatgcagttgcagctgcattcatctgatctcaaggaagattctattggactactctcttatctccccaggctattacatctaagcctcatcaatgcatacaatgggaggagcttgacctttatagatggttcttttccagcgcttaagaaactaagcttgcatggcctgcctaatctttctcacctagagtttcagaaagggagtcttgtggatctacgtgagctgatgcttggccgatgcgttcagctaactgaaataccccaaggccaagtcattcaagagcataattga
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| Protein seq | MAEMIAVSLSAKVAGALSRPVAIKLCSLAGIPSGIRAAAQDLELLRAFLRFVDTRHGGGDALADQVCDVAFELEDVADEYTFLSGHTSLRRRCANVAAWLTLSRRLRVARERLRELSATKEQYGIRPAAQASISAAAGEGEDPVAVIGRRLAERSHFVEEDEIVGFAAHTRLLMKWLTGDADPQRMRLLVCGMGGVGKTTLVTNVYKKVAASSHFDCHAWVTVSKSFTTEDLLRRIAKEFHRDVLAGMPWDVDKMNYRSLVEALRGHLSNKKYLLVLDDVWDARAWYEIREAFADDGTGSRIIITTRSQEVASLASSDKIIRLEPLSEQEAWSLFCKTTFKEDADQECPNQLKHLATKILERCYGLPLAIISVGNLLALKERTLFAWKNVHDSLVWYGSSDHGIGQVSSILNLSIDDLPHHLKICLMYCNIYPEDFLLKRKILIRKWIAEGLIEEKVQGTMEEVADDYLNQLVQRSLLHVVLHNEFGRAKLCRIHDLIRELIVHRSTKERLFVVSKRTVTLEPSRKARHVVLDQCTSDYLPVLKTASLRSFQAFRSDFDVSLLSGFRLLTMLNLWLIQIHKLPSTVANLVNLRYLGIRSTLIEELPRELGQLQNLQTLDAKWSMVQRLPKSITKLKNLRHLILFRRQSADITFGVPCTAIPVPVGLENMTCLQTLKYIKADEKMIKSLGSLKQMRSLELSGVDDSNLLHLPSSISKMSCLLRLGIITRDANVELDMEPFNPTPSKLQKLNLQGRLVRGNLPSLFGSLNNLMQLQLHSSDLKEDSIGLLSYLPRLLHLSLINAYNGRSLTFIDGSFPALKKLSLHGLPNLSHLEFQKGSLVDLRELMLGRCVQLTEIPQGQVIQEHN |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0003460 | OsLima_10g0003460.01 | Chr10 | 4683979 | 4686955 | + | NAM | ||
| CDS seq | atggcggagatgatcgccgtctccctctcggcaaaggttgccggcgcgctgtcgagacccgtggccatcaagctctgctctctcgccgggattccctcaggcatcagggcggcggcgcaagacctcgagctcctccgcgccttcctccgcttcgtcgacacccggcacggcggcggcgacgcgctcgctgaccaggtatgcgacgttgccttcgaactcgaggacgtcgcggacgagtacaccttcctctccggccacacctccttgcgccgccgctgcgctaacgtagccgcctggctcacgctctccaggcggctgcgagtggcgcgggagaggctccgcgagctctcggccaccaaggagcagtacggcatccgtcctgctgcccaggcctccatctcggctgctgctggtgaaggcgaagaccccgtggcggtcatcggccggaggctagcagagaggtcacacttcgtagaggaggatgagatcgttggtttcgcggcgcatacaaggttactgatgaaatggctgaccggggatgctgatccccagcgtatgcggctcttagtctgtggcatgggcggagttggcaagacaactcttgtcacaaacgtgtacaagaaagttgctgcgagctcccactttgattgccacgcgtgggtcactgtctccaagagcttcacgacggaagacctccttcgaagaatcgccaaggagtttcaccgggacgtccttgccggcatgccgtgggacgtggacaagatgaactaccggtcactggtcgaggctttgcgtgggcacctctccaacaagaaatacttgcttgtgctggatgatgtctgggatgcacgtgcgtggtacgagatccgcgaagcttttgccgatgatggaacagggagccggataatcatcaccacacgcagtcaagaggtcgcttctctggcatcatccgacaagatcatcaggttagagccgctctctgagcaggaagcatggtccttgttttgtaaaaccacgttcaaggaagacgcagaccaggaatgcccaaatcaactgaagcatttggctactaagattcttgaaagatgctatggtctgccattggccattatatctgttggtaatctgctcgcgttgaaggagagaacattgtttgcctggaagaacgtccatgacagccttgtgtggtatggaagcagtgaccatggaattggtcaagtgtcaagcatactgaatctgagcattgatgatctgccacaccacctcaagatatgtcttatgtattgcaatatatacccggaggatttcttgctaaaaaggaagatcctgatcaggaagtggatagctgaaggtttgattgaggaaaaggtgcagggcacaatggaggaggttgcagatgattacctgaaccagttagtgcaacgtagcctgttgcatgtcgtactgcacaacgagtttggacgtgccaagctatgccgtattcacgacctgatcagggaattgattgttcacaggtcaacaaaggagagattgtttgtagtctcaaagcgcacagtgacattagagccaagcagaaaagctcgccatgttgtactcgaccaatgtacaagtgattatctgccagttcttaagacagcatcgcttcgttccttccaagcattcaggtcagatttcgatgtttcactcttgtctggctttaggttattaaccatgctgaacttatggctcattcagatacataaactacctagcacagtggccaatcttgttaatctgcggtatcttggaatccgttccactctaattgaagagctcccacgggagttgggtcaattacaaaacctacaaactttggatgctaagtggtccatggtacagagattaccaaaaagcataacaaagctcaagaacctgcgtcacctgatactgtttagacggcaatctgcagatatcacttttggagtcccttgtacagcgattccagttccagtggggcttgaaaatatgacctgccttcagactcttaagtacattaaagctgatgagaagatgattaagtccttggggagcttgaagcagatgagaagcttagagctatccggtgtggatgacagcaatcttcttcatttgccatcatccatctccaaaatgagctgccttctgcgcttgggaattatcactagggatgccaatgttgaattggacatggaaccatttaatcctacaccgtctaagctacagaaacttaatttacaaggtaggttagtaagaggtaatttaccttcattgtttggctcccttaataacctcatgcagttgcagctgcattcatctgatctcaaggaagattctattggactactctcttatctccccaggctattacatctaagcctcatcaatgcatacaatgggaggagcttgacctttatagatggttcttttccagcgcttaagaaactaagcttgcatggcctgcctaatctttctcacctagagtttcagaaagggagtcttgtggatctacgtgagctgatgcttggccgatgcgttcagctaactgaaataccccaaggccaagtcattcaagagcataattga
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| Protein seq | MAEMIAVSLSAKVAGALSRPVAIKLCSLAGIPSGIRAAAQDLELLRAFLRFVDTRHGGGDALADQVCDVAFELEDVADEYTFLSGHTSLRRRCANVAAWLTLSRRLRVARERLRELSATKEQYGIRPAAQASISAAAGEGEDPVAVIGRRLAERSHFVEEDEIVGFAAHTRLLMKWLTGDADPQRMRLLVCGMGGVGKTTLVTNVYKKVAASSHFDCHAWVTVSKSFTTEDLLRRIAKEFHRDVLAGMPWDVDKMNYRSLVEALRGHLSNKKYLLVLDDVWDARAWYEIREAFADDGTGSRIIITTRSQEVASLASSDKIIRLEPLSEQEAWSLFCKTTFKEDADQECPNQLKHLATKILERCYGLPLAIISVGNLLALKERTLFAWKNVHDSLVWYGSSDHGIGQVSSILNLSIDDLPHHLKICLMYCNIYPEDFLLKRKILIRKWIAEGLIEEKVQGTMEEVADDYLNQLVQRSLLHVVLHNEFGRAKLCRIHDLIRELIVHRSTKERLFVVSKRTVTLEPSRKARHVVLDQCTSDYLPVLKTASLRSFQAFRSDFDVSLLSGFRLLTMLNLWLIQIHKLPSTVANLVNLRYLGIRSTLIEELPRELGQLQNLQTLDAKWSMVQRLPKSITKLKNLRHLILFRRQSADITFGVPCTAIPVPVGLENMTCLQTLKYIKADEKMIKSLGSLKQMRSLELSGVDDSNLLHLPSSISKMSCLLRLGIITRDANVELDMEPFNPTPSKLQKLNLQGRLVRGNLPSLFGSLNNLMQLQLHSSDLKEDSIGLLSYLPRLLHLSLINAYNGRSLTFIDGSFPALKKLSLHGLPNLSHLEFQKGSLVDLRELMLGRCVQLTEIPQGQVIQEHN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0162854 | SBH | 0.0 | 0.075030 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g07574 | RBH | 0.023539 | 0.020944 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0162854 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003750 | SBH | 0.060541 | 0.418124 | 0.710716 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003720 | SBH | 0.224891 | 0.342706 | 0.717078 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003640 | SBH | 0.536834 | 0.710475 | 1.576163 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003950 | SBH | 0.058470 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003730 | SBH | 5.502186 | 0.0 | 4.323135 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0070700 | RBH | 0.055869 | 0.143805 | 0.0275545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003620 | RBH | 0.036036 | 0.059739 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0082600 | SBH | 2.4748485 | 1.2290075 | 5.4913455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003470 | SBH | 0.0 | 0.203071 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003490 | RBH | 0.066959 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003630 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003390 | RBH | 0.106066 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003700 | RBH | 0.0 | 1.605675 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003820 | SBH | 0.049963 | 0.0 | 0.495752 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0003840 | SBH | 0.942294 | 0.0 | 0.500264 |
