Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0162854 | OGI:10013980 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:4210534-4213870 | ||||||||
| Gene Symbol | RLR1, OsRLR1 | ||||||||||
| DNA seq | ATTGCATAGTTCCATTTCCCAAAAATCCCAACTGAGCATTTCTCAAATCTCCGGTTCTCCAATTTCCGAAGGTTGTCAGGCACCATGGCGGAGATGATCGCCGTCTCCCTCTCGGCAAAGGTTGCCGGCGCGCTGTCGAGACCCGTGGCCATCAAGCTCTGCTCTCTCGCCGGGATTCCCTCAGGCATCAGGGCGGCGGCGCAAGACCTCGAGCTCCTCCGCGCCTTCCTCCGCTTCGTCGACACCCGGCACGGCGGCGGCGACGCGCTCGCCGACGCTTGGGTTGACCAGGTACGCGACGTTGCCTTCGAACTCGAGGACGTCGCGGACGAGTACACCTTCCTCTCCGGCCACACCTCCTTGCGCCGCCGCTGCGCTAACGTAGCCGCCTGGCTCACGCTCTCCAGGCGGCTGCGGGTGGCGCGGGAGAGGCTCCGCGAGCTCTCGGCCACCAAGGAGCAGTACGGCATCCGTCCTGCTGCCCAGGCCTCCATCTCGGCTGCTGCTGGTGAAGGCGAAGACCCCGTGGCGGTCATCGGCCGGAGGCTAGCAGAGAGGTCACACTTCGTAGAGGAGGATGAGATCGTTGGTTTCGCGGCGCATACAAGGTTACTGATGAAATGGCTGACCGGGGATGCTGATCCCCAGCGTATGCGGCTCTTAGTCTGTGGCATGGGCGGAGTTGGCAAGACAACTCTTGTCACAAACGTGTACAAGAAAGTTGCTGCGAGCTCCCACTTTGATTGCCACGCGTGGGTCACTGTCTCCAAGAGCTTCACGACGGAAGACCTCCTTCGAAGAATCGCCAAGGAGTTTCACCGGGACGTCCTTGCCGGCATGCCGTGGGACGTGGACAAGATGAACTACCGGTCACTGGTCGAGGCTTTGCGTGGGCACCTCTCCAACAAGAAATACTTGCTTGTGCTGGATGATGTCTGGGATGCACGTGCGTGGTACGAGATCCGCGAAGCTTTTGCCGATGATGGAACAGGAAGCCGGATAATCATCACCACACGCAGTCAAGAGGTCGCTTCTCTGGCATCATCCGACAATATCATCAGGTTAGAGCCGCTCTCTGAGCAGGAAGCATGGTCCTTGTTTTGTAAAACCACGTTCAAGGAAGACGCAGACCAGGAATGCCCAAATCAACTGAAGCATTTGGCTACTAAGATTCTTGAAAGATGCTATGGTCTGCCATTGGCCATTATATCTGTTGGTAATCTGCTCGCGTTGAAGGAGAGAACATTGTTTGCCTGGAAGAACGTCCATGACAGCCTTGTGTGGTATGGAAGCAGTGACCATGGAATTGGTCAAGTGTCAAGCATACTGAATCTGAGCATTGATGATCTGCCACACCACCTCAAGATATGTCTTATGTATTGCAATATATACCCGGAGGATTTCTTGCTAAAAAGGAAGATCCTGATCAGGAAGTGGATAGCTGAAGGTTTGATTGAGGAAAAGGTGCAGGGCACAATGGAGGAGGTTGCAGATGATTACCTGAACCAGTTAGTGCAACGTAGCCTGTTGCATGTCGTACTGCACAACGAGTTTGGACGTGCCAAGCTATGCCGTATTCACGACCTGATCAGGGAATTGATTGTTCACAGGTCAACAAAGGAGAGATTGTTTGTAGTCTCAAAGCGCACAGTGACATTAGAGCCAAGCAGAAAAGCTCGCCATGTTGTACTCGACCAATGTACAAGTGATTATCTGCCAGTTCTTAAGACAGCATCGCTTCGTTCCTTCCAAGCATTCAGGTCAGATTTCGATGTTTCACTCTTGTCTGGCTTTAGGTTATTAACCATGCTGAACTTATGGCTCATTCAGATACATAAACTACCTAGCACAGTGGCCAATCTTGTTAATCTGCGGTATCTTGGAATCCGTTCCACTCTAATTGAAGAGCTCCCACGGGAGTTGGGTCAATTACAAAACCTACAAACTTTGGATGCTAAGGGTGTGTTTGAGGAGAAGGGGATTGGAGAGATTGGGAAGATACGCAAAACGAGGTGGGCCATTAGCATATGATTAATTGAGTATTAACTATTTTAAATTGCAAAAATGGATTAATATGATTTTTTAAAGCAACTTTCCTATAGAAATTTTTTGCAAAAAACGCACCGTTTAGTAGTTTGGGAAGCGTGCGCGCGGAAAACGAGGAGCTTTCTCACCCAATGTCACTGGAACGAACACAGCCTAAGTGGTCCATGGTACAGAGATTACCAAAAAGCATAACAAAGCTCAAGAACCTGCGTCACCTGATACTGTTTAGACGGCAATCTGCAGATATCACTTTTGGAGTCCCTTGTACAGCGATTCCAGTTCCAGTGGGGCTTGAAAATATGACCTGCCTTCAGACTCTTAAGTACATTAAAGCTGATGAGAAGATGATTAAGTCCTGAATTTTTTTGAGAATTAATATTATTTTTATGGAAAATCGCAAAAGTAGTGGCCAACCGGGGAAAATCGCGAAAGTAGGTCCCTGTCGAACGGGTGCAATTCGATAGGGCACCTATCGAACGACGGGCAGTCGACAAAGCCCTGTCGAACGGCTGGCGTTCGACACGCTCACCTGTTGAACGGAGGGAGTTCGACAGGGCCCACCACCCGGCGCCGCGAGACCTGTCGAACCGGGTGCGTTCGATAGGGCCCTCCACCGACCCTGTCGAACAATGGGCGTTCGACAGGCCGGCTTAAAGCCCCATCCACCCAGGCCGCGAGTTCGATTTGTTTGAGGACCACATCGCCAGCCGCCGCCGAGAGTCGCCACATCGTCGCCGTGAGCGCCGGAGGGAGCGAGGGGAGGGGATAGCAGGCTGGAGAGGAGGCCGAGGAGGCGCCGGCCGGGAGGAAAGGGTTGGCGACGCCCTCCAGCAGTGAAGTTAAGGTATACATTAGTAATCCCTAAGTACAATGCATATGAAAGTTTAATAAAAAATTGGTTTAAGAGTTGTTAATTGTTTCGCATTGTTCGATGTTAGTATGTATGGTTAGCACATATTTGTTATTGCTAAATGTTGGTAGAGGTATCTAAGTAATTGTACGGTTAAATTAGTTATTAGTTAGTACATATTATTGATATGTTGTGTGTTAAAATAGGTACAAAGGTGTTATATTTTATTTGGATTATTAAACTAGTTGTTTGTTACTAATAGTTGTAAATTAGTACACGGCAATGTAGTATAAGTTGTAATAGGGTAATTATCGAATGATTAAATGATTAAACGTGAGACTATTTGTCATGTTTTATCAGGATGTCAGGTGATATGCCCATTCGTCTGTATTATGGCGATGCTCCTATACAAATATGTGATAGCGGGGTGGATTTGACTGT
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| CDS seq | ATGGCGGAGATGATCGCCGTCTCCCTCTCGGCAAAGGTTGCCGGCGCGCTGTCGAGACCCGTGGCCATCAAGCTCTGCTCTCTCGCCGGGATTCCCTCAGGCATCAGGGCGGCGGCGCAAGACCTCGAGCTCCTCCGCGCCTTCCTCCGCTTCGTCGACACCCGGCACGGCGGCGGCGACGCGCTCGCCGACGCTTGGGTTGACCAGGTACGCGACGTTGCCTTCGAACTCGAGGACGTCGCGGACGAGTACACCTTCCTCTCCGGCCACACCTCCTTGCGCCGCCGCTGCGCTAACGTAGCCGCCTGGCTCACGCTCTCCAGGCGGCTGCGGGTGGCGCGGGAGAGGCTCCGCGAGCTCTCGGCCACCAAGGAGCAGTACGGCATCCGTCCTGCTGCCCAGGCCTCCATCTCGGCTGCTGCTGGTGAAGGCGAAGACCCCGTGGCGGTCATCGGCCGGAGGCTAGCAGAGAGGTCACACTTCGTAGAGGAGGATGAGATCGTTGGTTTCGCGGCGCATACAAGGTTACTGATGAAATGGCTGACCGGGGATGCTGATCCCCAGCGTATGCGGCTCTTAGTCTGTGGCATGGGCGGAGTTGGCAAGACAACTCTTGTCACAAACGTGTACAAGAAAGTTGCTGCGAGCTCCCACTTTGATTGCCACGCGTGGGTCACTGTCTCCAAGAGCTTCACGACGGAAGACCTCCTTCGAAGAATCGCCAAGGAGTTTCACCGGGACGTCCTTGCCGGCATGCCGTGGGACGTGGACAAGATGAACTACCGGTCACTGGTCGAGGCTTTGCGTGGGCACCTCTCCAACAAGAAATACTTGCTTGTGCTGGATGATGTCTGGGATGCACGTGCGTGGTACGAGATCCGCGAAGCTTTTGCCGATGATGGAACAGGAAGCCGGATAATCATCACCACACGCAGTCAAGAGGTCGCTTCTCTGGCATCATCCGACAATATCATCAGGTTAGAGCCGCTCTCTGAGCAGGAAGCATGGTCCTTGTTTTGTAAAACCACGTTCAAGGAAGACGCAGACCAGGAATGCCCAAATCAACTGAAGCATTTGGCTACTAAGATTCTTGAAAGATGCTATGGTCTGCCATTGGCCATTATATCTGTTGGTAATCTGCTCGCGTTGAAGGAGAGAACATTGTTTGCCTGGAAGAACGTCCATGACAGCCTTGTGTGGTATGGAAGCAGTGACCATGGAATTGGTCAAGTGTCAAGCATACTGAATCTGAGCATTGATGATCTGCCACACCACCTCAAGATATGTCTTATGTATTGCAATATATACCCGGAGGATTTCTTGCTAAAAAGGAAGATCCTGATCAGGAAGTGGATAGCTGAAGGTTTGATTGAGGAAAAGGTGCAGGGCACAATGGAGGAGGTTGCAGATGATTACCTGAACCAGTTAGTGCAACGTAGCCTGTTGCATGTCGTACTGCACAACGAGTTTGGACGTGCCAAGCTATGCCGTATTCACGACCTGATCAGGGAATTGATTGTTCACAGGTCAACAAAGGAGAGATTGTTTGTAGTCTCAAAGCGCACAGTGACATTAGAGCCAAGCAGAAAAGCTCGCCATGTTGTACTCGACCAATGTACAAGTGATTATCTGCCAGTTCTTAAGACAGCATCGCTTCGTTCCTTCCAAGCATTCAGGTCAGATTTCGATGTTTCACTCTTGTCTGGCTTTAGGTTATTAACCATGCTGAACTTATGGCTCATTCAGATACATAAACTACCTAGCACAGTGGCCAATCTTGTTAATCTGCGGTATCTTGGAATCCGTTCCACTCTAATTGAAGAGCTCCCACGGGAGTTGGGTCAATTACAAAACCTACAAACTTTGGATGCTAAGGGTGTGTTTGAGGAGAAGGGGATTGGAGAGATTGGGAAGATACGCAAAACGAGGTGGGCCATTAGCATATGA
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| Protein seq | MAEMIAVSLSAKVAGALSRPVAIKLCSLAGIPSGIRAAAQDLELLRAFLRFVDTRHGGGDALADAWVDQVRDVAFELEDVADEYTFLSGHTSLRRRCANVAAWLTLSRRLRVARERLRELSATKEQYGIRPAAQASISAAAGEGEDPVAVIGRRLAERSHFVEEDEIVGFAAHTRLLMKWLTGDADPQRMRLLVCGMGGVGKTTLVTNVYKKVAASSHFDCHAWVTVSKSFTTEDLLRRIAKEFHRDVLAGMPWDVDKMNYRSLVEALRGHLSNKKYLLVLDDVWDARAWYEIREAFADDGTGSRIIITTRSQEVASLASSDNIIRLEPLSEQEAWSLFCKTTFKEDADQECPNQLKHLATKILERCYGLPLAIISVGNLLALKERTLFAWKNVHDSLVWYGSSDHGIGQVSSILNLSIDDLPHHLKICLMYCNIYPEDFLLKRKILIRKWIAEGLIEEKVQGTMEEVADDYLNQLVQRSLLHVVLHNEFGRAKLCRIHDLIRELIVHRSTKERLFVVSKRTVTLEPSRKARHVVLDQCTSDYLPVLKTASLRSFQAFRSDFDVSLLSGFRLLTMLNLWLIQIHKLPSTVANLVNLRYLGIRSTLIEELPRELGQLQNLQTLDAKGVFEEKGIGEIGKIRKTRWAISI |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0162854 | OsNip_10t0162854-01 | Chr10 | 4210534 | 4213870 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGGAGATGATCGCCGTCTCCCTCTCGGCAAAGGTTGCCGGCGCGCTGTCGAGACCCGTGGCCATCAAGCTCTGCTCTCTCGCCGGGATTCCCTCAGGCATCAGGGCGGCGGCGCAAGACCTCGAGCTCCTCCGCGCCTTCCTCCGCTTCGTCGACACCCGGCACGGCGGCGGCGACGCGCTCGCCGACGCTTGGGTTGACCAGGTACGCGACGTTGCCTTCGAACTCGAGGACGTCGCGGACGAGTACACCTTCCTCTCCGGCCACACCTCCTTGCGCCGCCGCTGCGCTAACGTAGCCGCCTGGCTCACGCTCTCCAGGCGGCTGCGGGTGGCGCGGGAGAGGCTCCGCGAGCTCTCGGCCACCAAGGAGCAGTACGGCATCCGTCCTGCTGCCCAGGCCTCCATCTCGGCTGCTGCTGGTGAAGGCGAAGACCCCGTGGCGGTCATCGGCCGGAGGCTAGCAGAGAGGTCACACTTCGTAGAGGAGGATGAGATCGTTGGTTTCGCGGCGCATACAAGGTTACTGATGAAATGGCTGACCGGGGATGCTGATCCCCAGCGTATGCGGCTCTTAGTCTGTGGCATGGGCGGAGTTGGCAAGACAACTCTTGTCACAAACGTGTACAAGAAAGTTGCTGCGAGCTCCCACTTTGATTGCCACGCGTGGGTCACTGTCTCCAAGAGCTTCACGACGGAAGACCTCCTTCGAAGAATCGCCAAGGAGTTTCACCGGGACGTCCTTGCCGGCATGCCGTGGGACGTGGACAAGATGAACTACCGGTCACTGGTCGAGGCTTTGCGTGGGCACCTCTCCAACAAGAAATACTTGCTTGTGCTGGATGATGTCTGGGATGCACGTGCGTGGTACGAGATCCGCGAAGCTTTTGCCGATGATGGAACAGGAAGCCGGATAATCATCACCACACGCAGTCAAGAGGTCGCTTCTCTGGCATCATCCGACAATATCATCAGGTTAGAGCCGCTCTCTGAGCAGGAAGCATGGTCCTTGTTTTGTAAAACCACGTTCAAGGAAGACGCAGACCAGGAATGCCCAAATCAACTGAAGCATTTGGCTACTAAGATTCTTGAAAGATGCTATGGTCTGCCATTGGCCATTATATCTGTTGGTAATCTGCTCGCGTTGAAGGAGAGAACATTGTTTGCCTGGAAGAACGTCCATGACAGCCTTGTGTGGTATGGAAGCAGTGACCATGGAATTGGTCAAGTGTCAAGCATACTGAATCTGAGCATTGATGATCTGCCACACCACCTCAAGATATGTCTTATGTATTGCAATATATACCCGGAGGATTTCTTGCTAAAAAGGAAGATCCTGATCAGGAAGTGGATAGCTGAAGGTTTGATTGAGGAAAAGGTGCAGGGCACAATGGAGGAGGTTGCAGATGATTACCTGAACCAGTTAGTGCAACGTAGCCTGTTGCATGTCGTACTGCACAACGAGTTTGGACGTGCCAAGCTATGCCGTATTCACGACCTGATCAGGGAATTGATTGTTCACAGGTCAACAAAGGAGAGATTGTTTGTAGTCTCAAAGCGCACAGTGACATTAGAGCCAAGCAGAAAAGCTCGCCATGTTGTACTCGACCAATGTACAAGTGATTATCTGCCAGTTCTTAAGACAGCATCGCTTCGTTCCTTCCAAGCATTCAGGTCAGATTTCGATGTTTCACTCTTGTCTGGCTTTAGGTTATTAACCATGCTGAACTTATGGCTCATTCAGATACATAAACTACCTAGCACAGTGGCCAATCTTGTTAATCTGCGGTATCTTGGAATCCGTTCCACTCTAATTGAAGAGCTCCCACGGGAGTTGGGTCAATTACAAAACCTACAAACTTTGGATGCTAAGGGTGTGTTTGAGGAGAAGGGGATTGGAGAGATTGGGAAGATACGCAAAACGAGGTGGGCCATTAGCATATGA
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| Protein seq | MAEMIAVSLSAKVAGALSRPVAIKLCSLAGIPSGIRAAAQDLELLRAFLRFVDTRHGGGDALADAWVDQVRDVAFELEDVADEYTFLSGHTSLRRRCANVAAWLTLSRRLRVARERLRELSATKEQYGIRPAAQASISAAAGEGEDPVAVIGRRLAERSHFVEEDEIVGFAAHTRLLMKWLTGDADPQRMRLLVCGMGGVGKTTLVTNVYKKVAASSHFDCHAWVTVSKSFTTEDLLRRIAKEFHRDVLAGMPWDVDKMNYRSLVEALRGHLSNKKYLLVLDDVWDARAWYEIREAFADDGTGSRIIITTRSQEVASLASSDNIIRLEPLSEQEAWSLFCKTTFKEDADQECPNQLKHLATKILERCYGLPLAIISVGNLLALKERTLFAWKNVHDSLVWYGSSDHGIGQVSSILNLSIDDLPHHLKICLMYCNIYPEDFLLKRKILIRKWIAEGLIEEKVQGTMEEVADDYLNQLVQRSLLHVVLHNEFGRAKLCRIHDLIRELIVHRSTKERLFVVSKRTVTLEPSRKARHVVLDQCTSDYLPVLKTASLRSFQAFRSDFDVSLLSGFRLLTMLNLWLIQIHKLPSTVANLVNLRYLGIRSTLIEELPRELGQLQNLQTLDAKGVFEEKGIGEIGKIRKTRWAISI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.075030 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g07574 | RBH | 0.023539 | 0.020944 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0162854 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001850 | SBH | 0.293854 | 9.704144 | 2.968899 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003460 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003640 | SBH | 0.536834 | 0.710475 | 1.576163 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003950 | SBH | 0.058470 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003350 | SBH | 2.828706 | 3.522375 | 5.142111 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0067700 | RBH | 3.6187615 | 33.88155 | 3.075858 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003620 | RBH | 0.036036 | 0.059739 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0075100 | RBH | 2.186606 | 15.853632 | 7.957001 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003680 | SBH | 0.202723 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003710 | SBH | 0.340554 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003630 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003390 | RBH | 0.106066 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003700 | RBH | 0.0 | 1.605675 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003820 | SBH | 0.049963 | 0.0 | 0.495752 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0003840 | SBH | 0.942294 | 0.0 | 0.500264 |
