Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0009140 | OGI:09039880 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:14150782-14151846 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagtaccactttaaaagaaaataatccttactctgaagtaaaTtttaaatagctggcaggtaacatagagtgctccaatgtgtttaggccctttaacctgtaaatttggaaataaaatagcttcaaaacacaatccagacaagcataaacataatccatgaaagaacaaacacaaagaaaattttctgtgcaaaacatcatggtttaggttgcaaccgctaaatggtaaggaactatgagctggacaatctctaattctaacatcaatgttccaggcttcccgccatcataaCaaaaaccacaaaactcccttcaattcaattatcgtgcttacgcagctacttattaccactcaagaaagaagaatcattttagagtttcataccgcaagtgcaccgaaaaccttcatcaggaaggacccagcagcctgcagcttgtcagggttcttcccactcgttgcaggctccctatctgcctatacatccaagcaaaacaaacaagcttccattaggcatgagctgaaaattttcacattaacatagcccaaccacacacacaccatgctcaccttctcagccagcagcctgatctccagcgccaccgtgtgcatcgcctccatcgcccatggcgtctcccagttccggaactcctgcaagaacgcgctgcaaccaaaaccacatcaatcttccacgaatgcgaaaagaaaaaggaaaaaaaacatgaataaatcaggggtaaggtagtgaggagagagggatggggaacgaacttggcggccttctcgaaggggtaggcgtcggcgaagcggcggagggagtgggagtggatggcgcggaggagcggggggaggaggtcggagaggtgcgggtagcggtcggcggcgaggcgcgggaagtccgggaaggcggagagcgcgtcggagagcggggtgggtgccggcgcggaggagacggcgaggagggaggcgagcgcggcgccgtccgacgaggagacggagtccgccacgcgggagaggtagtcggcgatgcggcggtgcgcctctcccatgctcaggtacgccgccat
More
|
||||||||||
| CDS seq | atggcggcgtacctgagcatgggagaggcgcaccgccgcatcgccgactacctctcccgcgtggcggactccgtctcctcgtcggacggcgccgcgctcgcctccctcctcgccgtctcctccgcgccggcacccaccccgctctccgacgcgctctccgccttcccggacttcccgcgcctcgccgccgaccgctacccgcacctctccgacctcctccccccgctcctccgcgccatccactcccactccctccgccgcttcgccgacgcctaccccttcgagaaggccgccaacgcgttcttgcaggagttccggaactgggagacgccatgggcgatggaggcgatgcacacggtggcgctggagatcaggctgctggctgagaaggcagatagggagcctgcaacgagtgggaagaaccctgacaagctgcaggctgctgggtccttcctgatgaaggttttcggtgcacttgcggttaaagggcctaaacacattggagcactctatgttacctgccagctatttaaaAtttacttcagagtaaggattattttcttttaa
More
|
||||||||||
| Protein seq | MAAYLSMGEAHRRIADYLSRVADSVSSSDGAALASLLAVSSAPAPTPLSDALSAFPDFPRLAADRYPHLSDLLPPLLRAIHSHSLRRFADAYPFEKAANAFLQEFRNWETPWAMEAMHTVALEIRLLAEKADREPATSGKNPDKLQAAGSFLMKVFGALAVKGPKHIGALYVTCQLFKIYFRVRIIFF |
||||||||||
| Function | Enhanced ethylene response protein 5 [UniProtKB/Swiss-Prot:Q8GWE6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0009140 | OsLima_09g0009140.01 | Chr09 | 14150782 | 14151846 | - | NAM | ||
| CDS seq | atggcggcgtacctgagcatgggagaggcgcaccgccgcatcgccgactacctctcccgcgtggcggactccgtctcctcgtcggacggcgccgcgctcgcctccctcctcgccgtctcctccgcgccggcacccaccccgctctccgacgcgctctccgccttcccggacttcccgcgcctcgccgccgaccgctacccgcacctctccgacctcctccccccgctcctccgcgccatccactcccactccctccgccgcttcgccgacgcctaccccttcgagaaggccgccaacgcgttcttgcaggagttccggaactgggagacgccatgggcgatggaggcgatgcacacggtggcgctggagatcaggctgctggctgagaaggcagatagggagcctgcaacgagtgggaagaaccctgacaagctgcaggctgctgggtccttcctgatgaaggttttcggtgcacttgcggttaaagggcctaaacacattggagcactctatgttacctgccagctatttaaaAtttacttcagagtaaggattattttcttttaa
More
|
|||||||
| Protein seq | MAAYLSMGEAHRRIADYLSRVADSVSSSDGAALASLLAVSSAPAPTPLSDALSAFPDFPRLAADRYPHLSDLLPPLLRAIHSHSLRRFADAYPFEKAANAFLQEFRNWETPWAMEAMHTVALEIRLLAEKADREPATSGKNPDKLQAAGSFLMKVFGALAVKGPKHIGALYVTCQLFKIYFRVRIIFF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0386400 | SBH | 1.274637 | 1.109682 | 1.649345 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g21760 | SBH | 0.865774 | 0.822577 | 0.405896 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0386400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0008850 | SBH | 0.458024 | 2.415211 | 4.936491 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0008960 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0009050 | SBH | 0.489659 | 3.787331 | 5.052531 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0008980 | SBH | 0.030256 | 0.081690 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0009190 | RBH | 0.0 | 0.0 | 1.735184 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0229400 | RBH | 0.296416 | 1.663413 | 0.6720495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0009150 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0213900 | RBH | 0.45693 | 2.7727805 | 1.806172 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0008960 | RBH | 0.336455 | 0.085475 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0008930 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0008850 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0008880 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0008890 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G009430 | RBH | 0.269923 | 0.0 | 0.614979 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0009210 | RBH | 0.0 | 0.0 | 2.314516 |
