Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0009050 | OGI:09038820 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:13264243-13268022 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agactgtagataagtgtcatttattaccgtgcgaaatggtctctttgttacactagtacaaacaccactgttacaataatacaaatgttactgtcaggcaatagtttttcaacgttttacaaaaacatgtgccgaatacaacagaataggagatagttaattcttttcaggggcgactatgaactagacaggcttcccattcaactttgggaaaggatcttgtttgctgaggacaagaactttgctcttatgagcaaagtatcctttaatgagattcttgtatattaggcacgccatgatgcactccacctgatagcaaggagaagacaaggttaatatatcacagagaagttgtaggtttcagttcgaaaatgaaatgtgtgtactgtcaaagagaacctcatccacgtccatgtcaatttcaagccatttcaaagcttttacaacgacttctagcttaatttgatgtgccttggctggctccttctgcctctgaatgatatggctgtaaaaggcatcgcaaatcaagaagggaattggtcatcacggaaaatgaagtatgacaagttgacaacgaccacttgaagattgcactcacattttcttaactaatctctgatagacttgaagttcaagcttctccaatacaaggtagacaccagattttaagaatcttgcaaaataaacaagcagtcagggacagtcgatggactgaaagagaaaaaaatcagcaaacgacaccatgaacttactggtcttcatgcctttcgagtgcttgcctaagaagcctgagatctcctctcttaagtgaggtcacaacatctgcatactgaaagactaaataaacacttgtacaatctaaatgggatatctgggaaaatttctataccactaaggataagaagctgtgatgccctaaaaacgaagttccatgtttacaaacacaaataaataattcagtggagcatatttagcaaaagtgactggtacaactaaataaattaaacaatagctacatcagacttagcttctataccaaaacagcttacaaatagaaatggaaattttacccatgctagatattgttgtaatttgaggagaaataataatgaatactaatagcaaaaccagcatgagttgaaatgaaaaatgaatggaaggtttattttgctatctgaggagaaacaaaatcaatcatgatttagaagttcaactgccaatcataaattcataacatagaagaccccatgactaattaattatgaggaaggtcataattaatggggataaggttggaacagtgagatgagaagacagatgggaggtggtattctgaatttctgatgcgagtctagtggagcttacagggatcgcaaactatcattctttaaacttcagtgcctattcttttaaccagtgtcattcttttaagtaaatgtgtgcatcatgtcaatactcactgctgtcatcccaaagttacatctttcgatgaaatgtgattatattggtagaacataagagaatatccagtgcatgactatattgttctttgcatctactgatacggaaaatatacaattgccaataaatgcccctaaatcttgcttcttgcaaaagaaaaacaacaagacagatgacaatggcatcagaacctagtctattggctaagtcattgacattgtaatgtcacaagggaaatctaatgaaatatcttggttatggaagtaacttgcagaaaatcaatacatctgttttgtaatagaaaatgagacagctaagcgcaatttgcaatttccctccaaattaagcaagtgtacaaggatatatacctcaagcagattgtacctctccagtagtgttattcttggcaaaacacctattgaaagctttactgggataagaaacttcaaaattctcctataaaattgagcattgatcagagttcgaacaggttgcatcataaattatatgctagaaaacttcaaaccccatgtaatacaagtacctcaaatttgactcatactgaggattacagtgcaccaaagcataagttagcttctgatctgcctgatttcaatagaacaaaaccagggAaaaaaaaaactttggtatcagtggtctcatcattttgtgtgcaagtaccacaaccatgtcgagagggagagagagcttacaacaagaaagttctcattaaacacctctaatctgccggtataatacatataagtgacctgaaacattatgcataatcaatagtttattagaaatggcaaggtaattgtaagtctttaagacagaaacagttaccagatttttgctaatcttaccttatctttcactggaaaatcttcaaaatcaaaattcctggcagtttcaatacttcttatgacactgcgacaaaggtgaactgttccaagctgcataatttaagaatattgttatatcgaagtatcgaactatagagtagatacatgtgtttgtgcatagtacacttcactatataaaaaatatatatgtattgagagtaccactttacaagaaaataatccttactctgaagtaaattttaaatagctggcaggtaacatagagtgctccaatgcgtttaggccctttaacctgtaaatttggaaataaaatagcttcagaacacaatccagacaagcataaacataatccatgaaagaacaagcacaaagaaaattttctgtgcaaaacatcatggtttaggttgcaactgctaaatggtagtaaggaactatgagccagaacatctctaacatcaatgttacacccataataacaaaaggcaacagaactcccttcaattcaattatcgtgcttacgcagctacttattaccactcaagaaagaagaatcattttagagtttcataccgcgagtgcaccgaaagccttcatcaggaaggacccagcagactgcagcttgtcagggttcttcccactcgttgcaagctccctatctgcctacacaaccaagcaaacaaacaaagcttccattaggcatgagccgaaaattttcacattcacagaacccaaccacacacaccatgctcaccttctcagccagcagcctgatctcaagcgccaccgtgtgcatcgcctccatcgcccacggcgtctcccagttccggaactcctgcaagaacgcgctgcaaccaaaaccacatcaatcttccaggaatgcgaaaaagaaaaaggataaaaaaaacatgaataaatcaggggtaaggtagtgaggagagaaggatggggaacgaacttggcggccttctcgaaggaggagtaggcgtcggcgaagcggcggagggagtgggagtggatggcgcggaggagcggggggaggaggtcggagaggtgcgggtagcggtcggcggcgaggcgcgggaagtccgggaaggcggagagcgcgtcggagagcggggcgggggcctgcgcggaggagacggcgaggagggaggcgagcgcggcgccgtccgacgaggagacggagtccgccacgcgggagaggtagtcggcgatgcggcggtgcgcctctcccatgctcaggtacgccgccatctccggcgcggcggctgcggcgccgccggggggtagggttcgtggtttcggcggcggcggcggcggcgatggcgtcggagtcggacccgaagaagggcggtttctgatttctgaagggtggtgacgatcgccgatcctggccgtcggatgggaaatcgatgcttgggggtagttttggtttttggaagcgatatcagat
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| CDS seq | atggcggcgtacctgagcatgggagaggcgcaccgccgcatcgccgactacctctcccgcgtggcggactccgtctcctcgtcggacggcgccgcgctcgcctccctcctcgccgtctcctccgcgcaggcccccgccccgctctccgacgcgctctccgccttcccggacttcccgcgcctcgccgccgaccgctacccgcacctctccgacctcctccccccgctcctccgcgccatccactcccactccctccgccgcttcgccgacgcctactcctccttcgagaaggccgccaacgcgttcttgcaggagttccggaactgggagacgccgtgggcgatggaggcgatgcacacggtggcgcttgagatcaggctgctggctgagaaggcagatagggagcttgcaacgagtgggaagaaccctgacaagctgcagtctgctgggtccttcctgatgaaggctttcggtgcactcgcggttaaagggcctaaacgcattggagcactctatgttacctgccagctatttaaaatttacttcagacttggaacagttcacctttgtcgcagtgtcataagaagtattgaaactgccaggaattttgattttgaagattttccagtgaaagataaggtcacttatatgtattataccggcagattagaggtgtttaatgagaactttcttgttgcagatcagaagctaacttatgctttggtgcactgtaatcctcagtatgagtcaaatttgaggagaattttgaagtttcttatcccagtaaagctttcaataggtgttttgccaagaataacactactggagaggtacaatctgcttgagtatgcagatgttgtgacctcacttaagagaggagatctcaggcttcttaggcaagcactcgaaaggcatgaagaccaattcttaaaatctggtgtctaccttgtattggagaagcttgaacttcaagtctatcagagattagttaagaaaatccatatcattcagaggcagaaggagccagccaaggcacatcaaattaagctagaagtcgttgtaaaagctttgaaatggcttgaaattgacatggacgtggatgaggtggagtgcatcatggcgtgcctaatatacaagaatctcattaaaggatactttgctcataagagcaaagttcttgtcctcagcaaacaagatcctttcccaaagttgaatgggaagcctgtctag
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| Protein seq | MAAYLSMGEAHRRIADYLSRVADSVSSSDGAALASLLAVSSAQAPAPLSDALSAFPDFPRLAADRYPHLSDLLPPLLRAIHSHSLRRFADAYSSFEKAANAFLQEFRNWETPWAMEAMHTVALEIRLLAEKADRELATSGKNPDKLQSAGSFLMKAFGALAVKGPKRIGALYVTCQLFKIYFRLGTVHLCRSVIRSIETARNFDFEDFPVKDKVTYMYYTGRLEVFNENFLVADQKLTYALVHCNPQYESNLRRILKFLIPVKLSIGVLPRITLLERYNLLEYADVVTSLKRGDLRLLRQALERHEDQFLKSGVYLVLEKLELQVYQRLVKKIHIIQRQKEPAKAHQIKLEVVVKALKWLEIDMDVDEVECIMACLIYKNLIKGYFAHKSKVLVLSKQDPFPKLNGKPV |
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| Function | Enhanced ethylene response protein 5 [UniProtKB/Swiss-Prot:Q8GWE6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0009050 | OsCMeo_09g0009050.01 | Chr09 | 13264243 | 13268022 | - | NAM | ||
| CDS seq | atggcggcgtacctgagcatgggagaggcgcaccgccgcatcgccgactacctctcccgcgtggcggactccgtctcctcgtcggacggcgccgcgctcgcctccctcctcgccgtctcctccgcgcaggcccccgccccgctctccgacgcgctctccgccttcccggacttcccgcgcctcgccgccgaccgctacccgcacctctccgacctcctccccccgctcctccgcgccatccactcccactccctccgccgcttcgccgacgcctactcctccttcgagaaggccgccaacgcgttcttgcaggagttccggaactgggagacgccgtgggcgatggaggcgatgcacacggtggcgcttgagatcaggctgctggctgagaaggcagatagggagcttgcaacgagtgggaagaaccctgacaagctgcagtctgctgggtccttcctgatgaaggctttcggtgcactcgcggttaaagggcctaaacgcattggagcactctatgttacctgccagctatttaaaatttacttcagacttggaacagttcacctttgtcgcagtgtcataagaagtattgaaactgccaggaattttgattttgaagattttccagtgaaagataaggtcacttatatgtattataccggcagattagaggtgtttaatgagaactttcttgttgcagatcagaagctaacttatgctttggtgcactgtaatcctcagtatgagtcaaatttgaggagaattttgaagtttcttatcccagtaaagctttcaataggtgttttgccaagaataacactactggagaggtacaatctgcttgagtatgcagatgttgtgacctcacttaagagaggagatctcaggcttcttaggcaagcactcgaaaggcatgaagaccaattcttaaaatctggtgtctaccttgtattggagaagcttgaacttcaagtctatcagagattagttaagaaaatccatatcattcagaggcagaaggagccagccaaggcacatcaaattaagctagaagtcgttgtaaaagctttgaaatggcttgaaattgacatggacgtggatgaggtggagtgcatcatggcgtgcctaatatacaagaatctcattaaaggatactttgctcataagagcaaagttcttgtcctcagcaaacaagatcctttcccaaagttgaatgggaagcctgtctag
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| Protein seq | MAAYLSMGEAHRRIADYLSRVADSVSSSDGAALASLLAVSSAQAPAPLSDALSAFPDFPRLAADRYPHLSDLLPPLLRAIHSHSLRRFADAYSSFEKAANAFLQEFRNWETPWAMEAMHTVALEIRLLAEKADRELATSGKNPDKLQSAGSFLMKAFGALAVKGPKRIGALYVTCQLFKIYFRLGTVHLCRSVIRSIETARNFDFEDFPVKDKVTYMYYTGRLEVFNENFLVADQKLTYALVHCNPQYESNLRRILKFLIPVKLSIGVLPRITLLERYNLLEYADVVTSLKRGDLRLLRQALERHEDQFLKSGVYLVLEKLELQVYQRLVKKIHIIQRQKEPAKAHQIKLEVVVKALKWLEIDMDVDEVECIMACLIYKNLIKGYFAHKSKVLVLSKQDPFPKLNGKPV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.489659 | 3.787331 | 5.052531 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0386400 | RBH | 1.274637 | 1.109682 | 1.649345 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g21760 | RBH | 0.865774 | 0.822577 | 0.405896 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0386400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0008850 | RBH | 0.458024 | 2.415211 | 4.936491 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0008780 | RBH | 0.182833 | 1.314107 | 4.031106 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0008820 | RBH | 0.086374 | 0.145656 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0009030 | RBH | 2.587917 | 12.783465 | 9.000105 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0223600 | RBH | 3.844203 | 8.7608925 | 4.609343 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0008980 | RBH | 0.178211 | 0.392119 | 0.888197 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0206100 | RBH | 4.104991 | 7.130865 | 8.1169865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0008960 | RBH | 0.336455 | 0.085475 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0008760 | RBH | 0.044637 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0008660 | RBH | 1.506498 | 12.214327 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0008700 | RBH | 0.000000 | 0.0 | 0.688087 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0008710 | RBH | 0.387360 | 4.631150 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G009260 | RBH | 0.348261 | 3.023783 | 2.699605 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0009030 | RBH | 0.294454 | 10.087779 | 5.225486 |
