Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0008730 | OGI:09038010 | 4/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:13534608-13535746 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcactcagtactaccattcgtcgacttctggctagcagaacctgttaattcatgataactacagtaagtacaacaatgtaatgggagaacaataagagaacgcaaaggtataatcataccgtcagttgtgagccaatcctgcaaacaaacgagcttttcaatatggtgtttacgtgattcaaatatagcaaactttgcagttcttattgctacattgcaatcagtacgacatggcatggccaatatgtcacgtgccatccgagcaaccgttggataggtcaggttatgttccttccaccagtgaagaacatcacgctcacctccagagaggcatggctcttgcaagtactgatcaagctcagtcaTcggtcgctcacaaattggatatccataacgacggtaatatttcaaccgatcatcatctctgctcacattgatttcatttctagtctccttagtacagttagaatcttccaccttgccagaatattcatcaaagagcctgagcaatatatcatccatacaacgaatataatctgtgtcagtgtgcaggtcaacatgaagtttgatgttttccagacgatatgaaggatcaacgatcatggccatatagaaatgtaagcaacaaagtttccagcatttcttgaacttctcttgcatcttctttaccacagtagcaaatgcatcatccctggggttatcaactttgcgttgcaaattacatttgacttgccacaccttctcaaagaggtccacgggacagggaaaattggcattatgtccatataccgatgaaaatcctccaaggtatcacaaatacgacgtgcacagctccagtctttccctgatgctgcatagttgtagtttgcatattttacttctgaagaggtgaggccctccgtgctctcagaacaattcattgacttctccacgattttgtcaagttcatccagccccacttgaataacctgatcaagtaaatgagttccatatcgtaccacaaacaagctctggtttgcgcagtgggagttccatttctggagatgggattcgacatttgaagcaactgaatcatcaacaaactcatcatccaatacaacactaaaaaccttatcacgaagaccccagttttcaataga
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| CDS seq | atgaattgttctgagagcacggagggcctcacctcttcagaagtaaaatatgcaaactacaactatgcagcatcagggaaagactggagctgtgcacgtcgtatttgtgataccttggaggattttcatcggtatatggacataatgccaattttccctgtcccgtggacctctttgagaagggatgatgcatttgctactgtggtaaagaagatgcaagagaagttcaagaaatgctggaaactttgttgcttacatttctatatggccatgatcgttgatccttcatatcgtctggaaaacatcaaacttcatgttgacctgcacactgacacagattatattcgttgtatggatgatatattgctcaggctctttgatgaatattctggcaaggtggaagattctaactgtactaaggagactagaaatgaaatcaatgtgagcagagatgatgatcggttgaaatattaccgtcgttatggatatccaatttgtgagcgaccgAtgactgagcttgatcagtacttgcaagagccatgcctctctggaggtgagcgtgatgttcttcactggtggaaggaacataacctgacctatccaacggttgctcggatggcacgtgacatattggccatgccatgtcgtactgattgcaatgtagcaataagaactgcaaagtttgctatatttgaatcacgtaaacaccatattgaaaagctcgtttgtttgcaggattggctcacaactgacggttctgctagccagaagtcgacgaatggtagtactgagtga
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| Protein seq | MNCSESTEGLTSSEVKYANYNYAASGKDWSCARRICDTLEDFHRYMDIMPIFPVPWTSLRRDDAFATVVKKMQEKFKKCWKLCCLHFYMAMIVDPSYRLENIKLHVDLHTDTDYIRCMDDILLRLFDEYSGKVEDSNCTKETRNEINVSRDDDRLKYYRRYGYPICERPMTELDQYLQEPCLSGGERDVLHWWKEHNLTYPTVARMARDILAMPCRTDCNVAIRTAKFAIFESRKHHIEKLVCLQDWLTTDGSASQKSTNGSTE |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 1 [UniProtKB/Swiss-Prot:B9FJG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0008730 | OsLima_09g0008730.01 | Chr09 | 13534608 | 13535746 | - | NAM | ||
| CDS seq | atgaattgttctgagagcacggagggcctcacctcttcagaagtaaaatatgcaaactacaactatgcagcatcagggaaagactggagctgtgcacgtcgtatttgtgataccttggaggattttcatcggtatatggacataatgccaattttccctgtcccgtggacctctttgagaagggatgatgcatttgctactgtggtaaagaagatgcaagagaagttcaagaaatgctggaaactttgttgcttacatttctatatggccatgatcgttgatccttcatatcgtctggaaaacatcaaacttcatgttgacctgcacactgacacagattatattcgttgtatggatgatatattgctcaggctctttgatgaatattctggcaaggtggaagattctaactgtactaaggagactagaaatgaaatcaatgtgagcagagatgatgatcggttgaaatattaccgtcgttatggatatccaatttgtgagcgaccgAtgactgagcttgatcagtacttgcaagagccatgcctctctggaggtgagcgtgatgttcttcactggtggaaggaacataacctgacctatccaacggttgctcggatggcacgtgacatattggccatgccatgtcgtactgattgcaatgtagcaataagaactgcaaagtttgctatatttgaatcacgtaaacaccatattgaaaagctcgtttgtttgcaggattggctcacaactgacggttctgctagccagaagtcgacgaatggtagtactgagtga
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| Protein seq | MNCSESTEGLTSSEVKYANYNYAASGKDWSCARRICDTLEDFHRYMDIMPIFPVPWTSLRRDDAFATVVKKMQEKFKKCWKLCCLHFYMAMIVDPSYRLENIKLHVDLHTDTDYIRCMDDILLRLFDEYSGKVEDSNCTKETRNEINVSRDDDRLKYYRRYGYPICERPMTELDQYLQEPCLSGGERDVLHWWKEHNLTYPTVARMARDILAMPCRTDCNVAIRTAKFAIFESRKHHIEKLVCLQDWLTTDGSASQKSTNGSTE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0381850 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g21430 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0381850 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0008600 | SBH | 0.0 | 0.000000 | 0.261356 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0008580 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0008800 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0008620 | SBH | 0.0 | 0.021543 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0008810 | SBH | 0.0 | 0.0 | 0.462775 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0219100 | SBH | 0.0871125 | 0.2583525 | 0.0165625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0008750 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0200800 | SBH | 0.155447 | 0.0431735 | 1.253043 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0008740 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0008540 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0008450 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0008490 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0008490 | SBH | 0.0 | 0.192738 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G009020 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0008800 | SBH | 0.0 | 0.772494 | 0.171566 |
