Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0381850 | OGI:09038060 | 13/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:12935736-12937393 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACCGAATGACAACTCTATTTGCGTAACCTACAAGAACATGTATACAGCAGTTAGTACAGTAATGCAATTGGATAGCAATTGAGAACAGCAAGGGCACAAACTTACCGCCTGATCTGAGCAAATCCTGAGTACAGACAAGCTCTTCAACAAAGTGGCTACCATCTGACTCAACAAGTGCGAGTTTTGCAGTCCTTGTTGCTACCTCATAATCAGCACCGTAAGGTATTGCCAATATGTCACGTGCTATCCGAGAGATTGTAGGATATATCATACTATGTTCCTTCCACCATCGCAGAACATCGATCCTATCGTTTGAGAGACATGGATCTTGCAAATACTGATCAAGTTCAGTCATCGGTCGCCACCACTGTGGAAATTCAGAACCAAGGTAATGAAATACCAACTTGTCATCTGGATACAAAGAATGCCCGCCACTAGTTTCAGAACTAGAAGTGCAGTTAGGGTCTTCAACCTGACCAGAATATTCATGGAAGAGCCTGAGTAATATGTCATTTACTTCTTCAATATAATCTATCATGTCATTGTCCAAATCAAGCGGAATATGTGACTTGATGATTTCCAGGCGGTATTTAGGATCTATGATCATAGGCATGCAGATATGTAAGCAACAGACTTTCCATTGTTCTTTGAATTGTTCTTGCATCTTTTCCCACACATAGGTAGTCTCTTTGTCATCATGGTAAAGAAGTTTACGGTGCACAACATTCTTCACATGCCAGATCGTGTCAAAGAGTTTAAGTGGACTGTGATGTTTGGGTATTTCGTCCTTTTGTTTATGAAAATCATCCAATATCTCACAAATATTCTCTGCCTTAACCCAGTCTTCCGATGATGGTGCATATCTATGATTTGGATACTGTAATGCTAAAGGAGCGGGGCCCTTTGGATATGAAGAAAACTTTCTCGACTTCTCCATGAATTTGTCAAGTTTAGAGAACTTCCTTGATTTTTCCATGATCTTGTCAAGCTCGTTGAGCCCCACCTGAATAACCTGATCAAGTAGATGAGTTGCGTAACGTACCACAAACAAGCTCTGGTTTCCAGATAAGCTTTGATCTGCATGCCGCAAGTTCCATTTTTGGAGGATGTCCTTGACATCTGAAGCCACTGAATTGTCAATGAATGTGTCATCCAGTGCAATGCTGAAAACCTTGCCAAGAAGACCCCAATCTTTAATAGCTATCAATATGACTTTAATCAATTCTTTTGCATTGCAAGAAGAATCCACAGCCCGGAATGCAATGATCTTTCGCTTACTCTCCCACTGATCATCGATGTAATGAACACTCAAGCACAAATACGGTGAGTGTGTATCATAGTGCCAAACATAAACACTCAGGGAGACCCGACTATTCGAAGATTCAAACTGCTTCTTAAGATTGGCCTTTTCTTCCTCAAACAGCCTCGTGAAGTACAAATACAGGTCAACATCAGATGGCAGCTCGACCTTGGGGTTCAAGGAAGCAACAAACTCACTGAATTCATCATGGTTCCTCATCGACGGAACGTACCCGTGCATTAGCGATATCCTAACGAGCTTATCAGTCACATTCTGATCAACCTGCAGGTTCTTTGTATTTGTGTCTGTGGGAGTGTCCTGCACAGGTGCACCATGTTCCTCGGCAGACTAATTCT
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| CDS seq | TCTGCCGAGGAACATGGTGCACCTGTGCAGGACACTCCCACAGACACAAATACAAAGAACCTGCAGGTTGATCAGAATGTGACTGATAAGCTCGTTAGGATATCGCTAATGCACGGGTACGTTCCGTCGATGAGGAACCATGATGAATTCAGTGAGTTTGTTGCTTCCTTGAACCCCAAGGTCGAGCTGCCATCTGATGTTGACCTGTATTTGTACTTCACGAGGCTGTTTGAGGAAGAAAAGGCCAATCTTAAGAAGCAGTTTGAATCTTCGAATAGTCGGGTCTCCCTGAGTGTTTATGTTTGGCACTATGATACACACTCACCGTATTTGTGCTTGAGTGTTCATTACATCGATGATCAGTGGGAGAGTAAGCGAAAGATCATTGCATTCCGGGCTGTGGATTCTTCTTGCAATGCAAAAGAATTGATTAAAGTCATATTGATAGCTATTAAAGATTGGGGTCTTCTTGGCAAGGTTTTCAGCATTGCACTGGATGACACATTCATTGACAATTCAGTGGCTTCAGATGTCAAGGACATCCTCCAAAAATGGAACTTGCGGCATGCAGATCAAAGCTTATCTGGAAACCAGAGCTTGTTTGTGGTACGTTACGCAACTCATCTACTTGATCAGGTTATTCAGGTGGGGCTCAACGAGCTTGACAAGATCATGGAAAAATCAAGGAAGTTCTCTAAACTTGACAAATTCATGGAGAAGTCGAGAAAGTTTTCTTCATATCCAAAGGGCCCCGCTCCTTTAGCATTACAGTATCCAAATCATAGATATGCACCATCATCGGAAGACTGGGTTAAGGCAGAGAATATTTGTGAGATATTGGATGATTTTCATAAACAAAAGGACGAAATACCCAAACATCACAGTCCACTTAAACTCTTTGACACGATCTGGCATGTGAAGAATGTTGTGCACCGTAAACTTCTTTACCATGATGACAAAGAGACTACCTATGTGTGGGAAAAGATGCAAGAACAATTCAAAGAACAATGGAAAGTCTGTTGCTTACATATCTGCATGCCTATGATCATAGATCCTAAATACCGCCTGGAAATCATCAAGTCACATATTCCGCTTGATTTGGACAATGACATGATAGATTATATTGAAGAAGTAAATGACATATTACTCAGGCTCTTCCATGAATATTCTGGTCAGGTTGAAGACCCTAACTGCACTTCTAGTTCTGAAACTAGTGGCGGGCATTCTTTGTATCCAGATGACAAGTTGGTATTTCATTACCTTGGTTCTGAATTTCCACAGTGGTGGCGACCGATGACTGAACTTGATCAGTATTTGCAAGATCCATGTCTCTCAAACGATAGGATCGATGTTCTGCGATGGTGGAAGGAACATAGTATGATATATCCTACAATCTCTCGGATAGCACGTGACATATTGGCAATACCTTACGGTGCTGATTATGAGGTAGCAACAAGGACTGCAAAACTCGCACTTGTTGAGTCAGATGGTAGCCACTTTGTTGAAGAGCTTGTCTGTACTCAGGATTTGCTCAGATCAGGCGGTAAGTTTGTGCCCTTGCTGTTCTCAATTGCTATCCAATTGCATTACTGTACTAACTGCTGTATACATGTTCTTGTAGGTTACGCAAATAGAGTTGTCATTCGGTGA
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| Protein seq | SAEEHGAPVQDTPTDTNTKNLQVDQNVTDKLVRISLMHGYVPSMRNHDEFSEFVASLNPKVELPSDVDLYLYFTRLFEEEKANLKKQFESSNSRVSLSVYVWHYDTHSPYLCLSVHYIDDQWESKRKIIAFRAVDSSCNAKELIKVILIAIKDWGLLGKVFSIALDDTFIDNSVASDVKDILQKWNLRHADQSLSGNQSLFVVRYATHLLDQVIQVGLNELDKIMEKSRKFSKLDKFMEKSRKFSSYPKGPAPLALQYPNHRYAPSSEDWVKAENICEILDDFHKQKDEIPKHHSPLKLFDTIWHVKNVVHRKLLYHDDKETTYVWEKMQEQFKEQWKVCCLHICMPMIIDPKYRLEIIKSHIPLDLDNDMIDYIEEVNDILLRLFHEYSGQVEDPNCTSSSETSGGHSLYPDDKLVFHYLGSEFPQWWRPMTELDQYLQDPCLSNDRIDVLRWWKEHSMIYPTISRIARDILAIPYGADYEVATRTAKLALVESDGSHFVEELVCTQDLLRSGGKFVPLLFSIAIQLHYCTNCCIHVLVGYANRVVIR |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0381850 | OsNip_09t0381850-00 | Chr09 | 12935736 | 12937393 | - | RAP2018-11-26 | ||
| CDS seq | TCTGCCGAGGAACATGGTGCACCTGTGCAGGACACTCCCACAGACACAAATACAAAGAACCTGCAGGTTGATCAGAATGTGACTGATAAGCTCGTTAGGATATCGCTAATGCACGGGTACGTTCCGTCGATGAGGAACCATGATGAATTCAGTGAGTTTGTTGCTTCCTTGAACCCCAAGGTCGAGCTGCCATCTGATGTTGACCTGTATTTGTACTTCACGAGGCTGTTTGAGGAAGAAAAGGCCAATCTTAAGAAGCAGTTTGAATCTTCGAATAGTCGGGTCTCCCTGAGTGTTTATGTTTGGCACTATGATACACACTCACCGTATTTGTGCTTGAGTGTTCATTACATCGATGATCAGTGGGAGAGTAAGCGAAAGATCATTGCATTCCGGGCTGTGGATTCTTCTTGCAATGCAAAAGAATTGATTAAAGTCATATTGATAGCTATTAAAGATTGGGGTCTTCTTGGCAAGGTTTTCAGCATTGCACTGGATGACACATTCATTGACAATTCAGTGGCTTCAGATGTCAAGGACATCCTCCAAAAATGGAACTTGCGGCATGCAGATCAAAGCTTATCTGGAAACCAGAGCTTGTTTGTGGTACGTTACGCAACTCATCTACTTGATCAGGTTATTCAGGTGGGGCTCAACGAGCTTGACAAGATCATGGAAAAATCAAGGAAGTTCTCTAAACTTGACAAATTCATGGAGAAGTCGAGAAAGTTTTCTTCATATCCAAAGGGCCCCGCTCCTTTAGCATTACAGTATCCAAATCATAGATATGCACCATCATCGGAAGACTGGGTTAAGGCAGAGAATATTTGTGAGATATTGGATGATTTTCATAAACAAAAGGACGAAATACCCAAACATCACAGTCCACTTAAACTCTTTGACACGATCTGGCATGTGAAGAATGTTGTGCACCGTAAACTTCTTTACCATGATGACAAAGAGACTACCTATGTGTGGGAAAAGATGCAAGAACAATTCAAAGAACAATGGAAAGTCTGTTGCTTACATATCTGCATGCCTATGATCATAGATCCTAAATACCGCCTGGAAATCATCAAGTCACATATTCCGCTTGATTTGGACAATGACATGATAGATTATATTGAAGAAGTAAATGACATATTACTCAGGCTCTTCCATGAATATTCTGGTCAGGTTGAAGACCCTAACTGCACTTCTAGTTCTGAAACTAGTGGCGGGCATTCTTTGTATCCAGATGACAAGTTGGTATTTCATTACCTTGGTTCTGAATTTCCACAGTGGTGGCGACCGATGACTGAACTTGATCAGTATTTGCAAGATCCATGTCTCTCAAACGATAGGATCGATGTTCTGCGATGGTGGAAGGAACATAGTATGATATATCCTACAATCTCTCGGATAGCACGTGACATATTGGCAATACCTTACGGTGCTGATTATGAGGTAGCAACAAGGACTGCAAAACTCGCACTTGTTGAGTCAGATGGTAGCCACTTTGTTGAAGAGCTTGTCTGTACTCAGGATTTGCTCAGATCAGGCGGTAAGTTTGTGCCCTTGCTGTTCTCAATTGCTATCCAATTGCATTACTGTACTAACTGCTGTATACATGTTCTTGTAGGTTACGCAAATAGAGTTGTCATTCGGTGA
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| Protein seq | SAEEHGAPVQDTPTDTNTKNLQVDQNVTDKLVRISLMHGYVPSMRNHDEFSEFVASLNPKVELPSDVDLYLYFTRLFEEEKANLKKQFESSNSRVSLSVYVWHYDTHSPYLCLSVHYIDDQWESKRKIIAFRAVDSSCNAKELIKVILIAIKDWGLLGKVFSIALDDTFIDNSVASDVKDILQKWNLRHADQSLSGNQSLFVVRYATHLLDQVIQVGLNELDKIMEKSRKFSKLDKFMEKSRKFSSYPKGPAPLALQYPNHRYAPSSEDWVKAENICEILDDFHKQKDEIPKHHSPLKLFDTIWHVKNVVHRKLLYHDDKETTYVWEKMQEQFKEQWKVCCLHICMPMIIDPKYRLEIIKSHIPLDLDNDMIDYIEEVNDILLRLFHEYSGQVEDPNCTSSSETSGGHSLYPDDKLVFHYLGSEFPQWWRPMTELDQYLQDPCLSNDRIDVLRWWKEHSMIYPTISRIARDILAIPYGADYEVATRTAKLALVESDGSHFVEELVCTQDLLRSGGKFVPLLFSIAIQLHYCTNCCIHVLVGYANRVVIR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g21430 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0381850 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0008600 | RBH | 0.0 | 0.000000 | 0.261356 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0008580 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0008800 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0008620 | SBH | 0.0 | 0.021543 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0008810 | SBH | 0.0 | 0.0 | 0.462775 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0219300 | RBH | 0.080663 | 0.1606725 | 0.08912 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0008760 | SBH | 0.0 | 0.0 | 0.024656 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0200800 | RBH | 0.155447 | 0.0431735 | 1.253043 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0008740 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0008550 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0008450 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0008490 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0008490 | SBH | 0.0 | 0.192738 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G009030 | RBH | 0.0 | 0.194452 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0008790 | SBH | 0.0 | 0.000000 | 0.330769 |
