Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0008700 | OGI:09037980 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:13508328-13513087 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tactgatgaggtgcaggctagcagcgcccgccaaccggcactgaggtaaggagttccacaaccacagcactcagatgcaaataatgggcattgcctctgtctaagctactaagcagagaagcacactgcaaataagagctgagtgagctgggagctgccaatctctgttttctctttttcttggattgcaatttttgattttagattggatatttgagagaatgcataggaaagggaaaggaaaagggaaagggatgcctttacattgtacttatctttccttacgttacctatctcagatgtggtcatagtaatatacttttttctttgtgccacttatctttcctttctatgctccactgatatatcagctggtccatgtgctatttggtgattgctgcttacatagttgtttttatttatctccgtacgctatgtgatgttatattcccttctcgatatatgttcagccattcaatcagttttgattagttaatgttcatgcatcagatttgttaatacaaaatgttctctgatctggtattcagcttggctaccagtacatgttacaagttcaatcttccacaagcaattgagaaaggttgcaggtgagaggcaagcagaagcatgacaggaatattgatttacttacatgataaccgttgtgccattaggtactaatactaacactattattttaaatcatgccccttctatagcttgcttctttggctgcatgtactatagctgattctttgctgttatatgatattttgaacttcctacagatgttgtatatgctatttaattttcatttttgttttcatgctctgcagtttcatctgcatgtaacctaaataatttcacggtgctcaactggatcactgtgggtgtagtttcattgctcatttcccatgtgaatattaatttattggcaatcctaattgtagctgccatttgatctcctttgtgatgttttacctgtccaaatttttatcccaacgggcatccttgaggtatatctgtgtttatgttataggtgcgcgctgatgcttggttctgcttcatttaatggcttagcttgattaacctgaaaatgtgaattgtgctcttaggggtttttataccatataatgtaatctatcTttttcagccttggacaatcggaggtcattgagattaaactctgcttgcttcgcatcctccagtaagtgtaagacttaaaaaaaatccatgggtattttttcacttcccaGTCgtaacatacatgtcataatgttaagcactaattgatttagttataaactatgtttgtgattacactagcaggtcccattaatcaatggaaaatattcttttttttcgcacatagacaagttatatttccaagtaaatttcttcattcaaaaatcacttattttggtatcaatggctagcgtaaccaactcagatgatcttcttgttgataaaatgcagtatgttcagcatggatggtgactttggtccattgcttgagcttatcaagttacacagaatgtatgggcttttgttggtcatggacgttgttagtgTttttctctcccttgaaatacatatttttttcctgactattggtaatcaagtaatgttgtaattttccttttcaaggcacacagttctcacttgtttgtggtggtgatggtggtggtttttaacatataatgtgatatcttttctttttcagccttggacagttggagatcattgtgatgttggtgtaattgggcttactaagtgctctggtactcatggtcttcttccctgttttgacacctttttgttagtatcaattcagagagagacaatttgcgtacatcccttggatttcatgatctgggtaaattttccactcaattctactcttacttctagccgctgtattatgttttcagtttggccataacataatcgaggtttcagttaatatgtaatttgtggtgtattacttgctacctacagtcccattaaattgatgttttcttaccgcctatgctcagactacaatcactggcagtccaagcagcctgcttcttgcctcttttaataagattacacatatatacatggattaattgtgtgattcttctcaaaatgcacttgaaatctgaaggtgtattctacatagtttgtgtatatggatttattcactaattcttcttcaagcagacaatcttggtttgcagccccaagtaaagggcaagtgtacgaatttagccacaaaagcgacgccaacgaggatcgccatcgacggtgaccgctgctccatcgatccttcttcccccgtttgctactctcacttcacaggttcaaataccatCcccgcgagatctcatctccaaaccacatgcctttactattaccacactatttcgctctctttctattcttttcattccccattttctctataccgaatatatgtttttagatcatcgagcgtcacacccttccttgagtcaatcaaactatcatagatctaccattaaccctaagtactgttgacagccctaatcagtgattatgcttaagtgatctaacctacaaaccctctttgatattagctgacccaaaaaatcctttctataaccattttattataggggtagactatttgattgtatcatttaactatgtagatttggcatcctaaatatacacctattctattacatattctctcactcatccttatttcagttcagatataaatgttatactttttggcttgcccattattgaaacatgtatactcgtactttagcccctttcaattccttatattttatatttgtgtcatgacttgctaatatcggattcagttcctaatatttctaatataaaaatttccctttttccatacattagaacaataccattacacgaaagtacaataaataattaatactctttcacataaatcctttaactactatactgaaaaaaatacttacatcaactgtaaattattaagctttttcacggctaTttagtcctattcttgcatcataattatcttatatcttatcgtagtatagccacttaacccagcacattatcttcttaccatatatatctttccagctacaactaagatttacaccacataaatacttacatacatcaagttatagatcacatacttcattgcatttctacatatcccaaaatactcaccctgtttAaaaataaaaaaattataataaaaactctaataactagctgagcctctcataactttttttatttatcaaatacatctaactacatgtgtatatatattgtagccacaatcatgtcttccgcagtgttcgcatcaatgaggctgaatgcaacaaatcaaagctacttggtaagctcaaagtcaaacaaaactttctatgtacaatatgctgttagcaccagtgcggatatgatattttctttctacagcctgtgccaatcacacttgcgacagcatataagatgcagcatggagataatctgaagttaaaaacttcccatggcttgaagataaagatcaaaatcaaggaagtagctagcacactgtacatgacgacaggatggagataatctgaagttagaaactggagaaacgattcttttcaggatgccatcacggtctaaagcgtgtgttatgatactgaacagacaaggccttattagatgtccagtgaagaccccatccaacagctcatcagctaacaaaaggtcccctgatccatcaggtcaattaaccagagcaagcacatttgaccatgcatcttctagcaaaagcgttccatttctgaggaatggaacaggtacaaagcttgcctcatcacattttttcaacttacactacccattaacatgtctattctgttttcgccgggtaatagaagatatacaattaaatcagccagatactcctccaacttacattggctgaaaacactgctatattgcctcctgcaaaattgcacatgctggacaagtgatttaaatctttctatctatgtttctattcatatgtaatcattttctgtgtcattttttactagcaggcagtaacaaaagaaaacctagcagacacctccttctgccaccagattaagctcacagctgaattgaagagttacatcaaagagattgcagattgtctagaagaatcaaacaagttctatgtagtgcgtatgaacagaacattcatggaacaggacagagtggtaatttttgacacaacatttccatcttcttatacccatactgagcatataaatgtcacttttctttttcagtactttgcgactgagttttcaaagaaatacattgtgaacttggttcgaggcaagacagcaaacattagagtgcagattgcaggtcgaccctcaacaacttaacatcagggtggttagctttgcagcagccaacagcatcaacttacacaatctgcatcttccacttttataggacacaagtcacctcatgctcaccatagatgctctgtgaaagttacctgcatcttcagtagtcgctgctattatctaccctggaacggctactataattctctctattatcctttgcttgcggtctatctaacttcacttgctcagtaagcacgtgacctataactgcttatcattgtcctcagctccTtttgttattcataagctgagtgaacaattaaccactttatgtacaaacagctagcttgttatactacaggttactatggtact
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| CDS seq | atgacaggaatattgatttacttacatgataaccgttgtgccattagccttggacaatcggaggtcattgagattaaactctgcttgcttcgcatcctccatatgttcagcatggatggtgactttggtccattgcttgagcttatcaagttacacagaatgtatgggcttttgttggtcatggacgttccttggacagttggagatcattgtgatgttggtgtaattgggcttactaagtgctctggtactcatggtcttcttccctgttttgacacctttttgttagtatcaattcagagagagacaatttgcgtacatcccttggatttcatgatctggccccaagtaaagggcaagtgtacgaatttagccacaaaagcgacgccaacgaggatcgccatcgacggtgaccgctgctccatcgatccttcttcccccgtttgctactctcacttcacagccacaatcatgtcttccgcagtgttcgcatcaatgaggctgaatgcaacaaatcaaagctacttgcctgtgccaatcacacttgcgacagcatataagatgcagcatggagataatctgaagttaaaaacttcccatggcttgaagataaagatcaaaatcaaggaagtagctagcacactgatgccatcacggtctaaagcgtgtgttatgatactgaacagacaaggccttattagatgtccagtgaagaccccatccaacagctcatcagctaacaaaaggtcccctgatccatcaggtcaattaaccagagcaagcacatttgaccatgcatcttctagcaaaagcgttccatttctgaggaatggaacagtaacaaaagaaaacctagcagacacctccttctgccaccagattaagctcacagctgaattgaagagttacatcaaagagattgcagattgtctagaagaatcaaacaagttctatgtagtgcgtatgaacagaacattcatggaacaggacagagtgtactttgcgactgagttttcaaagaaatacattgtgaacttggttcgaggcaagacagcaaacattagagtgcagattgcaggtcgaccctcaacaacttaa
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| Protein seq | MTGILIYLHDNRCAISLGQSEVIEIKLCLLRILHMFSMDGDFGPLLELIKLHRMYGLLLVMDVPWTVGDHCDVGVIGLTKCSGTHGLLPCFDTFLLVSIQRETICVHPLDFMIWPQVKGKCTNLATKATPTRIAIDGDRCSIDPSSPVCYSHFTATIMSSAVFASMRLNATNQSYLPVPITLATAYKMQHGDNLKLKTSHGLKIKIKIKEVASTLMPSRSKACVMILNRQGLIRCPVKTPSNSSSANKRSPDPSGQLTRASTFDHASSSKSVPFLRNGTVTKENLADTSFCHQIKLTAELKSYIKEIADCLEESNKFYVVRMNRTFMEQDRVYFATEFSKKYIVNLVRGKTANIRVQIAGRPSTT |
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| Function | Putative B3 domain-containing protein Os10g0158600 [UniProtKB/Swiss-Prot:Q7XGM6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0008700 | OsLima_09g0008700.01 | Chr09 | 13508328 | 13513087 | + | NAM | ||
| CDS seq | actgatgaggtgcaggctagcagcgcccgccaaccggcactgagccttggacaatcggaggtcattgagattaaactctgcttgcttcgcatcctccatatgttcagcatggatggtgactttggtccattgcttgagcttatcaagttacacagaatccttggacagttggagatcattgtgatgttgagagagacaatttgcgtacatcccttggatttcatgatctggccccaagtaaagggcaagtgtacgaatttagccacaaaagcgacgccaacgaggatcgccatcgacggtgaccgctgctccatcgatccttcttcccccgtttgctactctcacttcacagccacaatcatgtcttccgcagtgttcgcatcaatgaggctgaatgcaacaaatcaaagctacttgcctgtgccaatcacacttgcgacagcatataagatgcagcatggagataatctgaagttaaaaacttcccatggcttgaagataaagatcaaaatcaaggaagtagctagcacactgatgccatcacggtctaaagcgtgtgttatgatactgaacagacaaggccttattagatgtccagtgaagaccccatccaacagctcatcagctaacaaaaggtcccctgatccatcaggtcaattaaccagagcaagcacatttgaccatgcatcttctagcaaaagcgttccatttctgaggaatggaacagtaacaaaagaaaacctagcagacacctccttctgccaccagattaagctcacagctgaattgaagagttacatcaaagagattgcagattgtctagaagaatcaaacaagttctatgtagtgcgtatgaacagaacattcatggaacaggacagagtgtactttgcgactgagttttcaaagaaatacattgtgaacttggttcgaggcaagacagcaaacattagagtgcagattgcaggtcgaccctcaacaacttaa
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| Protein seq | TDEVQASSARQPALSLGQSEVIEIKLCLLRILHMFSMDGDFGPLLELIKLHRILGQLEIIVMLRETICVHPLDFMIWPQVKGKCTNLATKATPTRIAIDGDRCSIDPSSPVCYSHFTATIMSSAVFASMRLNATNQSYLPVPITLATAYKMQHGDNLKLKTSHGLKIKIKIKEVASTLMPSRSKACVMILNRQGLIRCPVKTPSNSSSANKRSPDPSGQLTRASTFDHASSSKSVPFLRNGTVTKENLADTSFCHQIKLTAELKSYIKEIADCLEESNKFYVVRMNRTFMEQDRVYFATEFSKKYIVNLVRGKTANIRVQIAGRPSTT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0008700 | OsLima_09g0008700.02 | Chr09 | 13508328 | 13513087 | + | NAM | ||
| CDS seq | actgatgaggtgcaggctagcagcgcccgccaaccggcactgagccttggacaatcggaggtcattgagattaaactctgcttgcttcgcatcctccatatgttcagcatggatggtgactttggtccattgcttgagcttatcaagttacacagaatgtatgggcttttgttggtcatggacgttccttggacagttggagatcattgtgatgttggtgtaattgggcttactaagtgctctgccacaatcatgtcttccgcagtgttcgcatcaatgaggctgaatgcaacaaatcaaagctacttggcagtaacaaaagaaaacctagcagacacctccttctgccaccagattaagctcacagctgaattgaagagttacatcaaagagattgcagattgtctagaagaatcaaacaagttctatgtagtgcgtatgaacagaacattcatggaacaggacagagtgtactttgcgactgagttttcaaagaaatacattgtgaacttggttcgaggcaagacagcaaacattagagtgcagattgcaggtcgaccctcaacaacttaa
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| Protein seq | TDEVQASSARQPALSLGQSEVIEIKLCLLRILHMFSMDGDFGPLLELIKLHRMYGLLLVMDVPWTVGDHCDVGVIGLTKCSATIMSSAVFASMRLNATNQSYLAVTKENLADTSFCHQIKLTAELKSYIKEIADCLEESNKFYVVRMNRTFMEQDRVYFATEFSKKYIVNLVRGKTANIRVQIAGRPSTT |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0008700 | OsLima_09g0008700.03 | Chr09 | 13508733 | 13513087 | + | NAM | ||
| CDS seq | atgacaggaatattgatttacttacatgataaccgttgtgccattagccttggacaatcggaggtcattgagattaaactctgcttgcttcgcatcctccatatgttcagcatggatggtgactttggtccattgcttgagcttatcaagttacacagaatgtatgggcttttgttggtcatggacgttccttggacagttggagatcattgtgatgttggtgtaattgggcttactaagtgctctggtactcatggtcttcttccctgttttgacacctttttgttagtatcaattcagagagagacaatttgcgtacatcccttggatttcatgatctggccccaagtaaagggcaagtgtacgaatttagccacaaaagcgacgccaacgaggatcgccatcgacggtgaccgctgctccatcgatccttcttcccccgtttgctactctcacttcacagccacaatcatgtcttccgcagtgttcgcatcaatgaggctgaatgcaacaaatcaaagctacttgcctgtgccaatcacacttgcgacagcatataagatgcagcatggagataatctgaagttaaaaacttcccatggcttgaagataaagatcaaaatcaaggaagtagctagcacactgatgccatcacggtctaaagcgtgtgttatgatactgaacagacaaggccttattagatgtccagtgaagaccccatccaacagctcatcagctaacaaaaggtcccctgatccatcaggtcaattaaccagagcaagcacatttgaccatgcatcttctagcaaaagcgttccatttctgaggaatggaacagtaacaaaagaaaacctagcagacacctccttctgccaccagattaagctcacagctgaattgaagagttacatcaaagagattgcagattgtctagaagaatcaaacaagttctatgtagtgcgtatgaacagaacattcatggaacaggacagagtgtactttgcgactgagttttcaaagaaatacattgtgaacttggttcgaggcaagacagcaaacattagagtgcagattgcaggtcgaccctcaacaacttaa
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| Protein seq | MTGILIYLHDNRCAISLGQSEVIEIKLCLLRILHMFSMDGDFGPLLELIKLHRMYGLLLVMDVPWTVGDHCDVGVIGLTKCSGTHGLLPCFDTFLLVSIQRETICVHPLDFMIWPQVKGKCTNLATKATPTRIAIDGDRCSIDPSSPVCYSHFTATIMSSAVFASMRLNATNQSYLPVPITLATAYKMQHGDNLKLKTSHGLKIKIKIKEVASTLMPSRSKACVMILNRQGLIRCPVKTPSNSSSANKRSPDPSGQLTRASTFDHASSSKSVPFLRNGTVTKENLADTSFCHQIKLTAELKSYIKEIADCLEESNKFYVVRMNRTFMEQDRVYFATEFSKKYIVNLVRGKTANIRVQIAGRPSTT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr09 | 13510051 | 13510203 | + | OsLima_09g0008700.03 | OsLima_09g0008700.01,OsLima_09g0008700.03 | All |
| A5 | Chr09 | 13509863 | 13510051 | + | OsLima_09g0008700.02,OsLima_09g0008700.03 | OsLima_09g0008700.01,OsLima_09g0008700.03,OsLima_09g0008700.02 | All |
| AF | Chr09 | 13508328 | 13509481 | + | OsLima_09g0008700.01,OsLima_09g0008700.02 | OsLima_09g0008700.01,OsLima_09g0008700.03,OsLima_09g0008700.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0381300 | RBH | 0.000000 | 0.000000 | 1.114078 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g21360 | RBH | 0.000000 | 0.000000 | 0.137079 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0381300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0008560 | RBH | 0.132401 | 0.000000 | 0.731625 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0008540 | RBH | 0.000000 | 0.000000 | 0.845160 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0008770 | RBH | 0.558553 | 0.986714 | 2.973516 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0008580 | RBH | 0.064084 | 0.088704 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0008780 | RBH | 0.000000 | 3.741453 | 2.085528 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0218800 | RBH | 1.053879 | 2.027086 | 1.2889065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0008720 | RBH | 0.000000 | 0.000000 | 0.161981 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0200200 | RBH | 1.446848 | 2.083942 | 10.7809815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0008510 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0008420 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0008460 | RBH | 0.000000 | 0.0 | 0.657574 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0008450 | RBH | 0.223167 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G008990 | RBH | 0.152225 | 2.012675 | 0.375081 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0008760 | RBH | 0.305625 | 2.542152 | 2.630813 |
