Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0008320 | OGI:02100930 | 7/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:13147312-13151628 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgttctggtctcgatttgctggttccccttctgttcaagctcgagtctttgccatcgtgcggcaccaagctccgccgttctgcgccgccagcgctgtttgccgattacagatatgatgatattggttggcttcccatattcacttttggtaagttaatccacagacagttccttcctatgttcttcgcttgcaaagaatgggctgcctacgaaaaaacaaatttgtgattcctatgttttcccctggttgtgtttgcatttatccggaacaatgctaattctgatttgtgatggttagattttgctttagttgtgtttgtatatagcccgaacaaacagatccgaggtgtttgtttccccagtgttttccctgccgagacaacggctctgccatagttgcacagatatgcaagttcattgcctctttggaatttaggtcaggctaagcagaattaggcctgctgggattttttttgttagccgacaacacctcagccataactgcacggatgcaaactgttagattacatgacccctttagaattcaggccaggctaaccagaactaggccaacatagaaaatttttcgttgatatttggattttatttaacacccgcatgagaatatggaaagttctctacttttttgaagtttgggactaggtaccatgtcctagatatcgaataagagattactctgaaaaattttcttcataaactggtgtgaatgggggagcatcagtcattggattatacctgataattcagatgtacgttgtcttcctatggcttttcatctaatgtatatgatttattattcaatggaaaggtactgttatacatgcagataggttgcccctttctttggagggtggtaggtacagtcctattataaataacaaatgtgaattcttcttttatcttattcatgtaaaaaggattggttccctccatgtatggtgctcatgtatgtcagagctatatgccatgtttcttgctatctagcaacctccttttgaaatttaggctaacaggagaaagtagggctgtcagtttttttgtttaacggcttttccaacatattcagatgcaaagacatttcagtgccttttaagagattaccaacagactgagatgactatttcaaagcaggacatgcgacagcgatgttgttcacgcatggaacagcttttagtagggaaatttgagggtgtctaccctttatacctgaacaacattattttcacagcgagtaggtgtaaaaagggatttgtaatatatggactttgtctgccatttccggtgtgttgtctgcactaatctgcatgtcgcataaaacgcacgcacgcaccagtttccaagattgcaattttgcaagcaaatagaatcagaaacctggtgcacgcgaattcttagaatccccagagcgcgattgaaggacatgtatctgaaatattaaagagaaccacaaaatttgctaaattgttgcatacacgtagcccttcacatttctatgagactatattggacggttaatgtctgagagagtctggtttagaataggcattggataaggctagcttcataacgtgttttaagagggcgatcagggcaaggtttagggcatgaatcagaacatttaagaaactacagtaccgtaccttacttttatctgtaaagttgctctttttaatatttaaataattggcaggttggagacatcaccaggtttgttgtgctctatatggtctgtgctgtgctcccctctgtgcttggttcgctgtggggatgtgcgtgggtgcctgtctaccaacggagctgacgctcgatggcccacctggtagtcactttggtccatggtgcgccggtgctaggtagttccttccctgcctgacaggctttccttttggtacaccgcccacttttactcaggacaatgcactgtctctctgtgtgagacacgtctattcgtggttctcctaccaacgtggtgcaccatggtcccccgtcacacgggtgctttcctgtatgcgtgttccgtgcgctaggagcacgttcacctaacaccactgaaagtagttgagaaattatccgctggttaataccacaaaaatcctgatgcacatgcatctattcgttgcagtcagcgacaggtggggtcaatttcgtgtgcttccccacctgccatacactatgcccatccgggaggttatagctgtatgatgccatgtttttttgtgagcgccgcgcgctacgccaccgcgtgaggcaccatcaaatcgacgtccatacacaccgtaccggcgtgcgcgcgagcaccgatgcccacgtcatggtcttagcctttccttctcctcttcatacccggttcgttagttctgctcgaggctgttgctggttcggttcgctggtgtgctttgctcccgttttgccccttttcgctgttgcgcacatggcgagcaccaggtgatatgctgccccatatgtctttcgttctccctgactgctattctgaatgtgtatgcgtgtgcaggggacattgtggatactgcgtcgacacttaggatttgccccgctcatctaggtatattgcctaactcaagctttgtgcttccttattgtcctggatcttgattgttgtttttgccttccagtgtacgactttagctcctcgacgccctgttcatttcgctcgaaggtcttggtggggttcgcgctgtaggctaggacgctcggccgaggtgactctgcccattggcttcttcgctagcccgtgtctgcacgtgttcctcgatccaacgaggtatatatccctcctccttctacggctttgatgttcatttgttcttctgcgtttctttccattgcgcttggcctttatttcgtgattttattgcggttggtttgttctgtgcctgctctatagttactgacagtataatatatgttatatatggaaaaatgtgtctcagtgccttaccaggcactgcatatgggcccatacaaccatactagctgcagctgcttgcctctttctgatctttccttttctcacttcagtgcttttgcatagtactgcctgatagtgctagaactgctgtgcgtctctacacgccctttgaaatatttctctgcgattcgcagtgttagctctttctccaagatggcagctgtgggagtttcctttgtttctttgttgaatgccgtcgcatggcattgtcgcctgccatccgtctcatacctctgggagctagatgggaacgatatcctgctagcaggtgttgagcttgctctgccatccgatgagagtcccagcaaaaccgtaagcaagttcttttggatcgctgcatctgatcagcctattgtttcccatgaaatggttgcacattaggctgttagatttctgcaggccaagtatgggttcgcagtccacgactacaacctgcagactttgctttcataccgtcaaatagctgcctctgcagtcgatgcagctcttacggcctcgacgcaccttgctaggtttcgagcgcgctatggtcccatggatctgtcatgtgagtgtattctgcgacagtgcattgctctgtggtccaattttgttaaggaagaccacttcttctatagcacatataggccatagaagtagctactgcaccaaacaattgtgttttaggatacgcgtttcgtaaaactatgtgtaatagtaccttttcttcagcgtatctgtttctaatggatgagtcattgtttggatttgtatgtgcgtgcccatttatatattaaatgctccatggtttcttactgatgattctgcagttttggtattcggtttgtgcctgccccccttcctgtcgagcaacttacccagtttaggattttccctatacacgatgtcgggtagctcttcccagcgtgtacagcgggcacgggaaagtcgaacgcgccgacgtgcttctataggccagggttcgtgcttctttgcattgcttaaaatgctacctacgattttttcggtgggcctcacccaaaaaatggTtttccctttttaggattcttgcaggctcctgtgttcagcaatgttagccctacagcccctaggctcaccactgtcctcccaggtctatcaggttctataccgagtgtgccgaaacctgctctcagcttgcctactatctcggacgtgggtgttgagtctcagaccgggtcgattggcaacacgtcgtgtcctgtgcatgactcacaacccgctcctagcagtaagtttacaataatctgcgttctacaccatagttctctccaatgatgcttatgtt
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| CDS seq | atggcgagcaccaggctaggacgctcggccgaggtgactctgcccattggcttcttcgctagcccgtgtctgcacgtgttcctcgatccaacgagcgtgtacagcgggcacgggaaagtcgaacgcgccgacgctcctgtgttcagcaatgttagccctacagcccctaggctcaccactgtcctcccaggtctatcaggttctataccgagtgtgccgaaacctgctctcagcttgcctactatctcggacgtgggtgttgagtctcagaccgggtcgattggcaacacgtcgtgtcctgtgcatgactcacaacccgctcctagcagtaagtttacaataatctgcgttctacaccatagttctctccaatga |
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| Protein seq | MASTRLGRSAEVTLPIGFFASPCLHVFLDPTSVYSGHGKVERADAPVFSNVSPTAPRLTTVLPGLSGSIPSVPKPALSLPTISDVGVESQTGSIGNTSCPVHDSQPAPSSKFTIICVLHHSSLQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0008320 | OsLima_09g0008320.01 | Chr09 | 13147312 | 13151509 | + | NAM | ||
| CDS seq | atgttctggtctcgatttgctggttccccttctgttcaagctcgagtctttgccatcgtgcggcaccaagctccgccgttctgcgccgccagcgctgttggagacatcaccaggtttgttgtgctctatatggtctgtgctgtgctcccctctgtgcttggttcgctgtggggatgtgcgtgggtgcctgtctaccaacggagctga
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| Protein seq | MFWSRFAGSPSVQARVFAIVRHQAPPFCAASAVGDITRFVVLYMVCAVLPSVLGSLWGCAWVPVYQRS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0008320 | OsLima_09g0008320.02 | Chr09 | 13149765 | 13151628 | + | NAM | ||
| CDS seq | atggcgagcaccaggctaggacgctcggccgaggtgactctgcccattggcttcttcgctagcccgtgtctgcacgtgttcctcgatccaacgagcgtgtacagcgggcacgggaaagtcgaacgcgccgacgctcctgtgttcagcaatgttagccctacagcccctaggctcaccactgtcctcccaggtctatcaggttctataccgagtgtgccgaaacctgctctcagcttgcctactatctcggacgtgggtgttgagtctcagaccgggtcgattggcaacacgtcgtgtcctgtgcatgactcacaacccgctcctagcagtaagtttacaataatctgcgttctacaccatagttctctccaatga
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| Protein seq | MASTRLGRSAEVTLPIGFFASPCLHVFLDPTSVYSGHGKVERADAPVFSNVSPTAPRLTTVLPGLSGSIPSVPKPALSLPTISDVGVESQTGSIGNTSCPVHDSQPAPSSKFTIICVLHHSSLQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr09 | 13150115 | 13151227 | + | OsLima_09g0008320.01 | OsLima_09g0008320.02,OsLima_09g0008320.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0039600 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0039300 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0023200 | SBH | 0.0017325 | 0.011204 | 0.0017645 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0010180 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0008130 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0003320 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0039300 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
