Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0004570 | OGI:09022040 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:7931897-7934092 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaaccacgtaactgtttgatgcaccgagtaacattttctggcatagctgcatcatcattgctgttgaaagatagtacgtatgcaagAaagtccttccgcaactctgtagtttcctaacaaaacattagccatacAaaaattagtgaaaactatattgccattttgtatacaaatcaaggctcatgcccgcacaatatctcataaacttacagttgAaaaccatcgaaccagtcgatgaccatcccatagtttcataaaattgaatacgaagaacccagagtcacagctagAaaacagttcacgggaagaaatgaGccaatcacttttcacaggtggtaattaaaactgttaaggtAattcttgttagagcctgcacctcctttgttgtctaggaagtttggggaagtcgtagtcccaggagagaaaattgactgcagaaTccaatgtcgagctaagaactccacagacagcatgcctgatattctcatgacggatcataggatccttgccaccttctctatcatctggtagagagtccagaatacaaagcttctgatcacacatgttAaaagcatataacgcccaatggccatcatgttgtactgggatgaatacctatatatatacacggggacacattccaaaattaaaaaggtaatgtttacaacatGgatttccatataatcgtatAattcacttgaaaaggtaatggatcaatttgacgAaaagattatcaagggcttagCctatttggagacacaaaagatcatatgtaccatatgcgatcgtgaggcgtcatagggaatatgtctgccagaaatgaagatttcggaagactgggttccctgctgtcctccAagacctatgaacaacgaacaacaaacagttatatgaacagcagaagaatatgcagtttggttgtagtaagaacttggagcaccctaCcataccacactcatcccgtacacagacaaacaacgaacttaccaaacagttaacatagtgtctccaacctaaACcttgtgtgtatttgaagttttcaatatcctgtcttgccatatttctaacagctaagttgaggcaacccgtatccatcaattctcctagttttacagatttctggatatcctgaagctttaaattgatagggaacggctgatggctgctagataccCAaagggccctgtcatgcaacaaaaaacgtggaggttatgactagagtaattaaaatatcgtataccactgtttgaaGgacataaattgcacttactgtgtggactttgaatcatccaattctatagtcagctcgtacaattggtcgagtatatttggatcatgtctcttaacaattagAtggcgtttaacaaaaaatggtgactgcagctccttgtttggttccaccgtaatcttagtcaatggagaaaccataactactgactgcattctcgcctgtgttagtggtcAatggagcatctgattaattacataGcatGcaatatgaagaagttactaactcataatcaactcatgcaattagagaaataggtcattactgttaggaaaccgccaacccacgaaggcccagcccgattactcactaatttggcccatcactaaacatggaaggtagaagatggaacgactataaataaaagagtagagagaaggaaTGtatgagtgaataagaaaagaatgattgaaaggatgccacaccctcctatcTtatatctccAactcttgtaggattatacAatccctcttggactacaggaggggttgcataatacattctaccggagatcaagaaagaaaggagggtaagaactcgaagatccgcatctcatttcgctgaaagcaaactcttcttcccgttcttgttccgttttcttgcgccttcgaacgaacaccaccatggccaacttgagtcgccggcgcgagccgattggggacaagacgtggccgcaatcgcccgcatggtacactgctgcactagcggcatgccggatgaaataggcgattgagcagacaaccacgacctagcaatcggctgccgcgcgagctcgccctgccatggctgtgcccgtgcggaccacctgcgtcgcgccgaacggcgccccatcgagcaccgagcgccccgccgctgggctgccgcgcagcgagccgcagggctgctgagcgctaagccaccgtgccat
More
|
||||||||||
| CDS seq | atggcacggtggcttagcgctcagcagccctgcggctcgctgcgcggcagcccagcggcggggcgctcggtgctcgatggggcgccgttcggcgcgacgcaggtggcgagaatgcagtcagtagttatggtttctccattgactaagattacggtggaaccaaacaaggagctgcagtcaccattttttgttaaacgccaTctaattgttaagagacatgatccaaatatactcgaccaattgtacgagctgactatagaattggatgattcaaagtccacacaggcccttTGggtatctagcagccatcagccgttccctatcaatttaaagcttcaggatatccagaaatctgtaaaactaggagaattgatggatacgggttgcctcaacttagctgttagaaatatggcaagacaggatattgaaaacttcaaatacacacaaggtctTggaggacagcagggaacccagtcttccgaaatcttcatttctggcagacatattccctatgacgcctcacgatcgcatatggtattcatcccagtacaacatgatggccattgggcgttatatgctttTaacatgtgtgatcagaagctttgtattctggactctctaccagatgatagagaaggtggcaaggatcctatgatccgtcatgagaatatcaggcatgctgtctgtggagttcttagctcgacattggAttctgcagtcaattttctctcctgggactacgacttccccaaacttcctagacaacaaaggagctgtgactctgggttcttcgtattcaattttatgaaactatgggatggtcatcgactggttcgatggtttTcaactgaaactacagagttgcggaaggacttTcttgcatacgtactatctttcaacagcaatgatgatgcagctatgccagaaaatgttactcggtgcatcaaacagttacgtggttag
More
|
||||||||||
| Protein seq | MARWLSAQQPCGSLRGSPAAGRSVLDGAPFGATQVARMQSVVMVSPLTKITVEPNKELQSPFFVKRHLIVKRHDPNILDQLYELTIELDDSKSTQALWVSSSHQPFPINLKLQDIQKSVKLGELMDTGCLNLAVRNMARQDIENFKYTQGLGGQQGTQSSEIFISGRHIPYDASRSHMVFIPVQHDGHWALYAFNMCDQKLCILDSLPDDREGGKDPMIRHENIRHAVCGVLSSTLDSAVNFLSWDYDFPKLPRQQRSCDSGFFVFNFMKLWDGHRLVRWFSTETTELRKDFLAYVLSFNSNDDAAMPENVTRCIKQLRG |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0004570 | OsLima_09g0004570.01 | Chr09 | 7931897 | 7934092 | - | NAM | ||
| CDS seq | atggcacggtggcttagcgctcagcagccctgcggctcgctgcgcggcagcccagcggcggggcgctcggtgctcgatggggcgccgttcggcgcgacgcaggtggcgagaatgcagtcagtagttatggtttctccattgactaagattacggtggaaccaaacaaggagctgcagtcaccattttttgttaaacgccaTctaattgttaagagacatgatccaaatatactcgaccaattgtacgagctgactatagaattggatgattcaaagtccacacaggcccttTGggtatctagcagccatcagccgttccctatcaatttaaagcttcaggatatccagaaatctgtaaaactaggagaattgatggatacgggttgcctcaacttagctgttagaaatatggcaagacaggatattgaaaacttcaaatacacacaaggtctTggaggacagcagggaacccagtcttccgaaatcttcatttctggcagacatattccctatgacgcctcacgatcgcatatggtattcatcccagtacaacatgatggccattgggcgttatatgctttTaacatgtgtgatcagaagctttgtattctggactctctaccagatgatagagaaggtggcaaggatcctatgatccgtcatgagaatatcaggcatgctgtctgtggagttcttagctcgacattggAttctgcagtcaattttctctcctgggactacgacttccccaaacttcctagacaacaaaggagctgtgactctgggttcttcgtattcaattttatgaaactatgggatggtcatcgactggttcgatggtttTcaactgaaactacagagttgcggaaggacttTcttgcatacgtactatctttcaacagcaatgatgatgcagctatgccagaaaatgttactcggtgcatcaaacagttacgtggttag
More
|
|||||||
| Protein seq | MARWLSAQQPCGSLRGSPAAGRSVLDGAPFGATQVARMQSVVMVSPLTKITVEPNKELQSPFFVKRHLIVKRHDPNILDQLYELTIELDDSKSTQALWVSSSHQPFPINLKLQDIQKSVKLGELMDTGCLNLAVRNMARQDIENFKYTQGLGGQQGTQSSEIFISGRHIPYDASRSHMVFIPVQHDGHWALYAFNMCDQKLCILDSLPDDREGGKDPMIRHENIRHAVCGVLSSTLDSAVNFLSWDYDFPKLPRQQRSCDSGFFVFNFMKLWDGHRLVRWFSTETTELRKDFLAYVLSFNSNDDAAMPENVTRCIKQLRG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.089904 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g12480 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0004510 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0004540 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0004610 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0004410 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004450 | RBH | 0.0 | 20.427145 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0125700 | RBH | 0.0079615 | 0.5259535 | 0.002533 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0004590 | RBH | 0.0 | 2.044600 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0119000 | RBH | 0.004374 | 0.043277 | 0.007881 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0004600 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004440 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0004520 | RBH | 0.0 | 18.344852 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004320 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0004370 | RBH | 0.040995 | 17.210735 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G004650 | RBH | 0.0 | 4.516435 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004500 | RBH | 0.0 | 18.333033 | 0.0 |
