Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0003560 | OGI:09017290 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:6336126-6337194 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccttatcaaactatgcctcctcctctgattcatcctccaaggcactctcaccatctgaaccagactccgagtcatcatctatattaggctctttctcctccggaagcacttgatttatagggacactctccaagtacatattctcatcatcaattccaacatgctcattcaatggattaggattactaagatagttGtcaccatcgggttctgtgttgttgtcgggttgctcttcctcttcaaattcccactctgtgataggcttgaatggctcagacggattggcataaacaatgaacatttctacaaccttcttcttattgtgtagatcaaacataactagcaactcttggtctgagttaacctctggaaaagttttgaggacatcatcatAgtactagacatgtgcaacctccaagtaccttgggggatacttgtcaacaactgattgaacaaaatccataaagcatgtcctgtccgaatcaacaatcatctcaaagttccaacatttaacatcctttcttatctttgtgcgattgccaatcaaatttatctttaacaaaaaattagagtctaataacctgtaacatcaagaacgACatgcatgcataagagctacatctaatcctactgccattgagtgctacaaaattttcaaaaaaactcactcagttgttgagttcatcgccatgccgagctgtctgcccacgccatccagggggttgctgcccgtgcctgcctgggagctgcctgcctgtgccgccgtggccgtgagctgcctgtcctgcgcctgcctgggattagccggccaagcagacctggggctggccgcccgggctggcagggcgctggcctcccgtgccaccggagtagcaggcctagggatggcctcccgtgccgccggcgctgcccgcccaagccgcgatgggctggcttcccgtgccgccggcgttggccgtccgggggagcccgccggcgccaatggctgctcGggcggtcgccatcttcgccgctcggctgattctccgtcctcgttacccggggggtcgccatccatgctgccggccat
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| CDS seq | atggccggcagcatggatggcgaccccccgggtaacgaggacggagaatcagccgagcggcgaagatggcgaccgccCgagcagccattggcgccggcgggctcccccggacggccaacgccggcggcacgggaagccagcccatcgcggcttgggcgggcagcgccggcggcacgggaggccatccctaggcctgctactccggtggcacgggaggccagcgccctgccagcccgggcggccagccccaggtctgcttggccggctaatcccaggcaggcgcaggacaggcagctcacggccacggcggcacaggcaggcagctcccaggcaggcacgggcagcaaccccctggatggcgtgggcagacagctcggcatggcgatgaactcaacaactgagttattagactctaattttttgttaaagataaatttgattggcaatcgcacaaagataagaaaggatgttaaatgttggaactttgagatgattgttgattcggacaggacatgctttatggattttgttcaatcagttgttgacaagtatcccccaaggtacttggaggttgcacattacTatgatgatgtcctcaaaacttttccagaggttaactcagaccaagagttgctagttatgtttgatctacacaataagaagaaggttgtagaaatgttcattgtttatgccaatccgtctgagccattcaagcctatcacagagtgggaatttgaagaggaagagcaacccgacaacaacacagaacccgatggtgaCaactatcttagtaatcctaatccattgaatgagcatgttggaattgatgatgagaatatgtacttggagagtgtccctataaatcaagtgcttccggaggagaaagagcctaatatagatgatgactcggagtctggttcagatggtgagagtgccttggaggatgaatcagaggaggaggcatag
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| Protein seq | MAGSMDGDPPGNEDGESAERRRWRPPEQPLAPAGSPGRPTPAAREASPSRLGRAAPAAREAIPRPATPVAREASALPARAASPRSAWPANPRQAQDRQLTATAAQAGSSQAGTGSNPLDGVGRQLGMAMNSTTELLDSNFLLKINLIGNRTKIRKDVKCWNFEMIVDSDRTCFMDFVQSVVDKYPPRYLEVAHYYDDVLKTFPEVNSDQELLVMFDLHNKKKVVEMFIVYANPSEPFKPITEWEFEEEEQPDNNTEPDGDNYLSNPNPLNEHVGIDDENMYLESVPINQVLPEEKEPNIDDDSESGSDGESALEDESEEEA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0003560 | OsLima_09g0003560.01 | Chr09 | 6336126 | 6337194 | - | NAM | ||
| CDS seq | atggccggcagcatggatggcgaccccccgggtaacgaggacggagaatcagccgagcggcgaagatggcgaccgccCgagcagccattggcgccggcgggctcccccggacggccaacgccggcggcacgggaagccagcccatcgcggcttgggcgggcagcgccggcggcacgggaggccatccctaggcctgctactccggtggcacgggaggccagcgccctgccagcccgggcggccagccccaggtctgcttggccggctaatcccaggcaggcgcaggacaggcagctcacggccacggcggcacaggcaggcagctcccaggcaggcacgggcagcaaccccctggatggcgtgggcagacagctcggcatggcgatgaactcaacaactgagttattagactctaattttttgttaaagataaatttgattggcaatcgcacaaagataagaaaggatgttaaatgttggaactttgagatgattgttgattcggacaggacatgctttatggattttgttcaatcagttgttgacaagtatcccccaaggtacttggaggttgcacattacTatgatgatgtcctcaaaacttttccagaggttaactcagaccaagagttgctagttatgtttgatctacacaataagaagaaggttgtagaaatgttcattgtttatgccaatccgtctgagccattcaagcctatcacagagtgggaatttgaagaggaagagcaacccgacaacaacacagaacccgatggtgaCaactatcttagtaatcctaatccattgaatgagcatgttggaattgatgatgagaatatgtacttggagagtgtccctataaatcaagtgcttccggaggagaaagagcctaatatagatgatgactcggagtctggttcagatggtgagagtgccttggaggatgaatcagaggaggaggcatag
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| Protein seq | MAGSMDGDPPGNEDGESAERRRWRPPEQPLAPAGSPGRPTPAAREASPSRLGRAAPAAREAIPRPATPVAREASALPARAASPRSAWPANPRQAQDRQLTATAAQAGSSQAGTGSNPLDGVGRQLGMAMNSTTELLDSNFLLKINLIGNRTKIRKDVKCWNFEMIVDSDRTCFMDFVQSVVDKYPPRYLEVAHYYDDVLKTFPEVNSDQELLVMFDLHNKKKVVEMFIVYANPSEPFKPITEWEFEEEEQPDNNTEPDGDNYLSNPNPLNEHVGIDDENMYLESVPINQVLPEEKEPNIDDDSESGSDGESALEDESEEEA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g37240 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020000 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0003500 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0003540 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0003620 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0095900 | SBH | 0.114982 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0003530 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0095300 | RBH | 0 | 0 | 0.012452 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0003580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0000420 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0003500 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0003570 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G003690 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0003590 | RBH | 0.0 | 0.0 | 0.0 |
