Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_06g0020000 | OGI:09017290 | 14/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr06:22080469-22081075 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGACGAACTCAACAAATGAGTAAGTTTCTTGAAAATTTTGTAGCACTCAATGGCAGTAGGATTAGATGTAGCTCTTATGCATGTCGCTCTTGATGTTACAGGTTATCAGACTCTAATTTTTTGCTAAAGATAAATCTGATTGGCAATCACAGAAAGATGAGAAAGGATATTAAATGTTGGAATTTTGAGATGATTGTTGATTCGGACAGGACATGCTTCATGGATTTTGTTCAATCAGTTGTTGACAAGTATCCCCCAAGGTACTTGGAGGTTGCACATGTCCAGCACTATGATGTCCTCAAAACTTTTCCAGAGGTTAACTCAGACCAAGAGTTGCTAGTCATGTTTGATCTGCACAATAAGAAGAAGGTTGTAGAAATGTTCATTGTTTATTCTGATCCGTCTGAGCCATTCAAGCCTATCAATGAGTGGGAATTTGAAGAGGAAGAGCAACCTGACAACAACATAGAACCCGATGGTGATAACTATCTTAGTAATCCTAATCCATTGAATGAGCATGTTGGTGTTGATGAGGAGAGTATGTACTTGGATAGTGTCCCTGTAAATCAAGCTAGTCCTGCAATGAGCACAAGAAGCAAATGA
More
|
||||||||||
| CDS seq | ATGGCGACGAACTCAACAAATGAGTTATCAGACTCTAATTTTTTGCTAAAGATAAATCTGATTGGCAATCACAGAAAGATGAGAAAGGATATTAAATGTTGGAATTTTGAGATGATTGTTGATTCGGACAGGACATGCTTCATGGATTTTGTTCAATCAGTTGTTGACAAGTATCCCCCAAGGTACTTGGAGGTTGCACATGTCCAGCACTATGATGTCCTCAAAACTTTTCCAGAGGTTAACTCAGACCAAGAGTTGCTAGTCATGTTTGATCTGCACAATAAGAAGAAGGTTGTAGAAATGTTCATTGTTTATTCTGATCCGTCTGAGCCATTCAAGCCTATCAATGAGTGGGAATTTGAAGAGGAAGAGCAACCTGACAACAACATAGAACCCGATGGTGATAACTATCTTAGTAATCCTAATCCATTGAATGAGCATGTTGGTGTTGATGAGGAGAGTATGTACTTGGATAGTGTCCCTGTAAATCAAGCTAGTCCTGCAATGAGCACAAGAAGCAAATGA
More
|
||||||||||
| Protein seq | MATNSTNELSDSNFLLKINLIGNHRKMRKDIKCWNFEMIVDSDRTCFMDFVQSVVDKYPPRYLEVAHVQHYDVLKTFPEVNSDQELLVMFDLHNKKKVVEMFIVYSDPSEPFKPINEWEFEEEEQPDNNIEPDGDNYLSNPNPLNEHVGVDEESMYLDSVPVNQASPAMSTRSK |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_06g0020000 | OsAzu_06g0020000.01 | Chr06 | 22080469 | 22081075 | + | NAM | ||
| CDS seq | ATGGCGACGAACTCAACAAATGAGTTATCAGACTCTAATTTTTTGCTAAAGATAAATCTGATTGGCAATCACAGAAAGATGAGAAAGGATATTAAATGTTGGAATTTTGAGATGATTGTTGATTCGGACAGGACATGCTTCATGGATTTTGTTCAATCAGTTGTTGACAAGTATCCCCCAAGGTACTTGGAGGTTGCACATGTCCAGCACTATGATGTCCTCAAAACTTTTCCAGAGGTTAACTCAGACCAAGAGTTGCTAGTCATGTTTGATCTGCACAATAAGAAGAAGGTTGTAGAAATGTTCATTGTTTATTCTGATCCGTCTGAGCCATTCAAGCCTATCAATGAGTGGGAATTTGAAGAGGAAGAGCAACCTGACAACAACATAGAACCCGATGGTGATAACTATCTTAGTAATCCTAATCCATTGAATGAGCATGTTGGTGTTGATGAGGAGAGTATGTACTTGGATAGTGTCCCTGTAAATCAAGCTAGTCCTGCAATGAGCACAAGAAGCAAATGA
More
|
|||||||
| Protein seq | MATNSTNELSDSNFLLKINLIGNHRKMRKDIKCWNFEMIVDSDRTCFMDFVQSVVDKYPPRYLEVAHVQHYDVLKTFPEVNSDQELLVMFDLHNKKKVVEMFIVYSDPSEPFKPINEWEFEEEEQPDNNIEPDGDNYLSNPNPLNEHVGVDEESMYLDSVPVNQASPAMSTRSK |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g37240 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0003500 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0019930 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0003620 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0003530 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0320700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020050 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0003500 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G003690 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0003590 | RBH | 0.0 | 0.0 | 0.0 |
