Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0002840 | OGI:09014050 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:5182807-5191031 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggtagcacttaaatttgttgtaagtagtatagaggtcagggttgctatcaatcagctaacccaaagaatagaaggcagctcaattaacccaactgcatcatatattcatatatGgtgttattttttagataggtggtactcgaagcatcctagagttctggtgggggcaggcagaactgatagaactgtatcttcaatggcaaatcaaagattactgttgcaataatcccaccagatcatatacgctgtttgtataaagatctggatggatagtatttgaagcgtcctgaagttctggtaaggtagtcacgcctgcgattataatgcaagtccaaacggcatttgagacttgattgggcataaggggtaagatttttctacacatatggaataataagagaagttcctcaccagacagaacaagtagtgttttgcaaccagtgttctggccaaatagtatgtcagtgtctagtctgtcaccgaccatgcacattcttgatgtctccaaattgaagctgcagcatttcaaagagtaataaagatttaaaggtgacctctaagcagtaactgtaaatcaatacaggaaaacgaaatcattgtgtgtcttgtcttcttaatgaggatgaaacattatgaaattgtccatgggcgttgggatgggaggaatagcactagatcttatGggcatagtaagaagatggagagatctccgcagggaggacagaagaaatatgtgtacgattttgttagctctttgctcaattaaatcaacaggtttgtcaggactttttagcggcagccctaatgAAaaacttgatcaaaggacaacttcctaactagtaggtgatagtgatactactgcgtaccaattaataggagataggctaccaaacagaagcaaaccaaaccctaattgaattgagaatttgaggcctaatgcagtatccacagcacttttactttaaaaaaaaattcacaacactttcataaaaaccatattaacagaacacttctccaaccaaaacaaatacttatgaatatatgtttctccatccaacatttgttcttctagtgtcatgttactcgtttggtttggtccgttattcatatggcttctaacttacaacctcctcaaaatggtactcagatgtttgggcgttggcttacatgtgttcctaaagacatgagaaatctgtttttgatGggtgcagcagctctttgttggtccatttggctaagcaaaaacggggtcattttttacaacaagatggtgtctttcctcctttgcagattattgctttagccgcccgatggctacgcacctggtctatcctccacaaaccgggtcttcaggatactattgtggtggtattgcggcgtttggatcaggtggcacaggaatttttcgatctagtctacggtttgatagtcagtaatttccctgttttgtgttgagggtgtagttaggtcctgttttgtggctatgtgcatttcatacagaggccgggagtgggctcagttagaatgtatcatcttggtgtatttgattgagttttttttttaataaagcttccattatcggAaaaaaaatgaatatatgtttctggcttggagttctattaacaacaattcacaaatatgacttacttgtcatttgtcaaccccaccaatcatgtaaaaaaatccaaactaatgaattgcatgagcctattagttggtatcctatctctagttattagccacacagcaaaccctcatgtaggttacatggatttgtttttctaaattggtcggtattgccaatttgtttagtcagtgcacatttaaacaatcttagaaggtttctagatttctgttgcaaagaattgataatgcaaatgcttgaatgactaacAaaatgccacttttcttcgtgtacgtcacaaaccttttcaagaggaagtccattaaaaagcttgaaggttttccaacaacaatgggctctttctgcacagagcaactaacagcagcaaccatagttcccgctcctgttacttacagtgatcaggaaatgaagcaatAaagaaaatggccagtaggatcatggttcaataaattcaaacctggccattcttgaacggatgtcatatgaccagtaggatcacggttggtcgcaatgaaaagacagcctggattctcacgaatacacaagctcgcatacctgcaagagtagcattatgatttgatcattacaaaatttcattgagaaaatagtggacataggcttaggtggttgtttttaaTCtttgtttagatatactaattaaactatgtattaggaaaaatgtgttgtcctgtataatgtatagacaaaattccaatgttctgattaaaaacaaacagttccctctgcatgggtggtcactatttctgttcttgcagggtgtaaaaactccatggccataaatataaatctaagaaacaaacactaggtttctccatacaacaataatctgttgactgttgcaatcaataaatcactggcagcaaccggaatcaggagtaactgaaattgtccatgtccccactccctcttttctcctgcagcgccttgtcctacaccatttgcttgctgagccatcactctgtaccaccagcgacatcaagaacatatagtagctagcaactgctgaccacaaggtgtccatttgacctgatgcctgcagtgccaacgaatccatatttgtggagagattgaataggggaaaagaagggctctgtacaagatttggctgtggagttcaagagcagagagaagagcaagtaaggaggaatgtaagagagatttttcagctggttatttagactttctcatgtctagactctagaccaaattaacattttttttagtatttcTgtcaaacaaactattatgtaaataagggtttttttttttatttgaccaccattaactcttgtctcggtgatttacctcccttaactctttaaaccaaataaattatccactgctattatgctaacaaagtaagaactaactaattttccaaaaatccctattaaaacatgttttattaaactaatttaattattaagatgcaaacgatcaagaaaggagcaaacccacatttcaaCccagaactattgcattggtccagaaaacaccctaaactataagaccgcccactattcatccctgaactattaaaaccggtcaaaatgcccctttcacttaaaatcaccccggttttactcagctaacggtggttttatgctatgtggcatcctaatagacaacatttgctgaTttgccatgctgatacAaaacaaaaaaataatggaagagcccactggttagggaaagctcctcaccctggcaactcattatttactgctaacacttgttcctcctcctaagctgagcagaaggagcgagaattgaaccaaggccaaggaatgactaaccggacatatggaatgacctcaaagctagtcccacaggaagcatagtgaacggagctagcagggtgttgtggccaccgctcatggtttataaccacatgcctcccacattgccatcagaccagagaaaagtaaagcagggtagacctcagcagccgcagaagaacgcaggcagtggccaagcaaaattttaccccaaaaatctgggaacaaaacacgatgtagcatccacttttgaatgggtgaagtacccaaatgaattagttctgcttgttcaagattgtgtttcaaacagcttagtagttgattttcagagtccgtaaaagttgagggatgaaaaatggacttgttctttaaatttaggcataaattttcattttgcataaaataattgaaaactttggaaacactccaagttattaacaaggtgaataaaacatcatatcaacagaatgcttggtagaaatatagtgttcttgctgactcttgtttcaactcttatgtcctgaatattctcttgacaatcatgcaaacagctattagtaacttccaagtgatactaagctattctactaaggtgaggggaagctacagacggaaagagaaaaggaagcaaaaggtactacaaaacttgtgaaggtactagggaggatagaaatcttaaccatcagttgtaaaattagtggtgcatccaacacacaaagaatgaaaggaGggggaaaaagaccaatgggcctgaactatttgtgtgccatttccccacaagtggggatcattcaacagtttacccagtagggcaatcggcgtcaacgattcacatatcctgtggttatgcttaaaagcttaaaagatgtacagaattcttttcTtttttttttgtaaaagatactctgatgtccattaaCcccacagctttctcatggatctgccagtaagtaaacctctaatacattgtagaagggaaaggcgcaaaggttaaatttggtacattatatgggtaactgaaacaagcacgtgtTGtgattgacaacgaagataagattaaaacaaaaggataagatcataagaggcctcactgcattttgtagtagttgaagtactgatcaagtccaacaatgacagctccaacctggaatagatatttcattaagcttagtctgcatgattacattcagactgatctacataagatcaaaactccgataaagaggttttgatattacgcttttgtcatgttcaaagtagaagtttgcctccagcaatAtgtttttcttgccatcctcctgtagaaaacatcattagttaaatgggaaggtgaaatatggtaagatatccctggaaggggaatttcagttttcagtcattcagcaactgtcccttaagatggataaaggaaaatccaccatgctacatttaagaaacatgcttatgtgactacaatatttaagcattcctctggccactgactacaatatttatccaagtccaactgcagctgttagaaactcaaaatttgtgtggatacttctggcccattttattttcaacaacactggtgatgctgtgtctgttactttcaaaccataggacgtggcctacggcaagcatatatcctctgtggtggcccactaattactatagcttcttcaccggtggctagaaaaataagactcaatataacaatgcataggagatacatacaaatgcaagcattagaactatgctgatgcatcatcagtgttaggtacatagaggagacctgctacaagtcaaaattctaggaagcattagatgcaccaagaatagaatatcatagtgaaataagaggaacctccactgcaaacatgaaccgaagatggaataaggaaaatctacctaatttgtaagggaaggagtaaggatgccatgcttatcttaccgggccacctaaacattcaaaaccggctaatctgagctcttccaaaataccatcctcaccgacaacataaaccttaagaagagaagtttcaactttgatcagtattacacgagtgataacaagggcacaaaatacatgaaaaaccactgttttgtggtacactaacataaattaagtagcatggtaagatcaaccatcgctatttgtcccttgcataaatggtcttttaaatatctttagcagataccaattcttaatcctgtggaggtacttttatcagtcaaatcatagttaatgcttatcacaacttaaaattgactttattgagtgtatattgtattattgtatagacaacttcaacctggaggttagcacacagctacacacaaactatgcacttattttttttaaccttttctaatacaatttaagactaaatacatgtgcatcttgtttcaacatctaaaccctttttgctgtgccactgtagcatacaggctacagctggcatagcaacacagctctgcaccagagcgaagtcgtgctgtggcaagagtttggcctcgccacaccattgctcatgaggatggtccggtggtgtgataaccaaagctgtcacaccaacagtgttactggcaagaaaaaaggctcagaaagtagaacggaataacaaatgtgagagtcactttttgtcatgaagcttcctgcatatatgtgttacactattcctaagccaatgttttgttAaagtgccttaatagttttttcttgatgaaaacattagtaggagtaactgttagtacagaagatattcaacaccatgtctagaaagcagattgaaagtagactaaaaaaatacctaaatattaaattcgaatatttggtacagttgctcctttttgcctgacattttgacctttcacaatcttcaagatgcaactttgaccattaattattataaacttacattaagatgtgataataaaattataaaattgtgaaagcatctataataacaaatctaatggcacacattttattAaaaaatctaaatagtttcaaacatgtcagtagtcaaactttataaaggttgaccacatgtatttcagggcttcgaataaaaagaatggaggtggtatgaattagtggtaccttcttttctggagagaaattatttaacttcaagaacatggctgctgcaaatgatgatgtaaagaTCtcttcctgcagagaagataacaattatggagtactacgtaacaaataatcatgatacaggAaactatcatcagaggaatctggatgtatagaaactacctctgtaacttcaagtccaagtgctctgaacttcttcgcatactgtcttctcgactttctagagttgttcgttacaaaaactaatttcttgccctgcaccaagtcaatgcaataaaatcatctacttaacctatgtataatggactggtgctgtatttatgagctaacctaaatacagtgatgttctcagaaagtgttctaagtttcatattaaatgcccaagataaaggcagtaaagacttatgatggattatgttatgccccgcctattatgtcataactcataattatatacagtctatacagaaaacttccagtttattcaaataattagcactagagccatgttaaagcaaaaccatattgcatcatcaagggaaaaaaggtgtttataacaggtaatattgctgtttttatatacattcttccgtttctcctccaccctttttctgcttttcctgtaattcaacctgccattgcagatcattcctctaagcttcttctacttatcattttcatgtattataaacaatgtttatgtacttccataactatggtagctaacagcaaaaatacatagtatgcagaagttgatgttttccttcatcttacagagtatccaaaataccaaataggtaatcactacagaacgcagccatatgtattagtcatttcatcccctagtcatggaatagagatctattttctcttaaccaaagactagtcttacatcaaggtcaaatttggtgtgccaagaagaaaacaaatacaaatttagttcttagtcttaattcttccagtttatctataactgaacggtgctctggactatgctaaagatttcactcaggatggtatcctatgaattacacaagcaactttaaattcacaacttctttttttaaaaaaaaaacatcagcaacttaggaagaaacatatcattttcttttcctattcacagtcttgatgtactttgatccatccgattagtgagtttataaaacaatgaacagaatacaagaaaagcagctgtaagttgtaactgtgatttactgttattaacgattccagtcaccaaacaaaaccctaatcacagctagcaggatacaacgaactaagcaaatgttgtcgctagtagcacaaaccattttccgcaggaggtccaaagtctcagggaccccttcgattagctgatcccccttccaaatcacccctgcaatccaaaccaaacaaaagttactactggagagcaacagaaacaacaaccctaatcacagcttcacaatcgaacaggtactcccccAaaaaaaaaacccaagaaatctcccccaaaaaaagaagggaaggagacgagacgatgatggatcgaataccgtcgcagtcgaagaggaaggcgtcgacggagtcgacgagggatcgggcggcgtcggcggtgaggaGggggttggggagcccgttggccatggatggatgattccttggctgctgttttctgctccgcctccgctggtttttggtgagattcgaatgt
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| CDS seq | atggccaacgggctccccaaccccCtcctcaccgccgacgccgcccgatccctcgtcgactccgtcgacgccttcctcttcgactgcgacggggtgatttggaagggggatcagctaatcgaaggggtccctgagactttggacctcctgcggaaaatgggcaagaaattagtttttgtaacgaacaactctagaaagtcgagaagacagtatgcgaagaagttcagagcacttggacttgaagttacagaggaagaGAtctttacatcatcatttgcagcagccatgttcttgaagttaaataatttctctccagaaaagaaggtttatgttgtcggtgaggatggtattttggaagagctcagattagccggttttgaatgtttaggtggcccggaggatggcaagaaaaacaTattgctggaggcaaacttctactttgaacatgacaaaagcgttggagctgtcattgttggacttgatcagtacttcaactactacaaaatgcagtatgcgagcttgtgtattcgtgagaatccaggctgtcttttcattgcgaccaaccgtgatcctactggtcatatgacatccgttcaagaatggccaggagcgggaactatggttgctgctgttagttgctctgtgcagaaagagcccattgttgttggaaaaccttcaagctttttaatggacttcctcttgaaaagcttcaatttggagacatcaagaatgtgcatggtcggtgacagactagacactgacatactatttggccagaacactggttgcaaaacactacttgttctgtctggcgtgactaccttaccagaacttcaggacgcttcaaatactatccatccagatctttatacaaacagcgtatatgatctggtgggattattgcaacagtaa
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| Protein seq | MANGLPNPLLTADAARSLVDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVFVTNNSRKSRRQYAKKFRALGLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVYVVGEDGILEELRLAGFECLGGPEDGKKNILLEANFYFEHDKSVGAVIVGLDQYFNYYKMQYASLCIRENPGCLFIATNRDPTGHMTSVQEWPGAGTMVAAVSCSVQKEPIVVGKPSSFLMDFLLKSFNLETSRMCMVGDRLDTDILFGQNTGCKTLLVLSGVTTLPELQDASNTIHPDLYTNSVYDLVGLLQQ |
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| Function | Phosphoglycolate phosphatase 2 [UniProtKB/Swiss-Prot:Q8GWU0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0002840 | OsLima_09g0002840.01 | Chr09 | 5182807 | 5191031 | - | NAM | ||
| CDS seq | atggccaacgggctccccaaccccCtcctcaccgccgacgccgcccgatccctcgtcgactccgtcgacgccttcctcttcgactgcgacggggtgatttggaagggggatcagctaatcgaaggggtccctgagactttggacctcctgcggaaaatgggcaagaaattagtttttgtaacgaacaactctagaaagtcgagaagacagtatgcgaagaagttcagagcacttggacttgaagttacagaggaagaGAtctttacatcatcatttgcagcagccatgttcttgaagttaaataatttctctccagaaaagaaggtttatgttgtcggtgaggatggtattttggaagagctcagattagccggttttgaatgtttaggtggcccggaggatggcaagaaaaacaTattgctggaggcaaacttctactttgaacatgacaaaagcgttggagctgtcattgttggacttgatcagtacttcaactactacaaaatgcagtatgcgagcttgtgtattcgtgagaatccaggctgtcttttcattgcgaccaaccgtgatcctactggtcatatgacatccgttcaagaatggccaggagcgggaactatggttgctgctgttagttgctctgtgcagaaagagcccattgttgttggaaaaccttcaagctttttaatggacttcctcttgaaaagcttcaatttggagacatcaagaatgtgcatggtcggtgacagactagacactgacatactatttggccagaacactggttgcaaaacactacttgttctgtctggcgtgactaccttaccagaacttcaggacgcttcaaatactatccatccagatctttatacaaacagcgtatatgatctggtgggattattgcaacagtaa
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| Protein seq | MANGLPNPLLTADAARSLVDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVFVTNNSRKSRRQYAKKFRALGLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVYVVGEDGILEELRLAGFECLGGPEDGKKNILLEANFYFEHDKSVGAVIVGLDQYFNYYKMQYASLCIRENPGCLFIATNRDPTGHMTSVQEWPGAGTMVAAVSCSVQKEPIVVGKPSSFLMDFLLKSFNLETSRMCMVGDRLDTDILFGQNTGCKTLLVLSGVTTLPELQDASNTIHPDLYTNSVYDLVGLLQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.653524 | 0.320604 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0261300 | RBH | 2.130085 | 3.256931 | 6.031669 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g08660 | RBH | 1.444212 | 1.723615 | 1.029452 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0261300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0002860 | RBH | 2.377946 | 12.853234 | 7.533482 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0002870 | RBH | 0.347443 | 0.000000 | 3.936204 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0002850 | RBH | 1.964018 | 18.753944 | 9.539349 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0002740 | RBH | 0.134626 | 0.626617 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0002910 | RBH | 12.636082 | 43.213577 | 17.527519 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0077300 | RBH | 8.781132 | 9.959559 | 8.198149 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0002800 | RBH | 0.420142 | 1.173194 | 2.288378 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0079800 | RBH | 8.5291875 | 7.306274 | 13.0499795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0002870 | RBH | 1.420572 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0002890 | RBH | 3.139760 | 18.941591 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0002780 | RBH | 0.886853 | 0.0 | 0.773790 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0002900 | RBH | 0.619378 | 4.299351 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G002850 | RBH | 1.120274 | 6.611367 | 3.948854 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0002890 | RBH | 1.759207 | 7.820889 | 10.330972 |
