Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0001500 | OGI:09037980 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:2606457-2612006 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aggacaagttataaaccggttcaaacttaaaatatcacttgggacacatttcatgtttgtatttctgcaaacttgggctggtgctatattcatatagaactcgacattactgatctgagaactcatatccggtacagaatcaaagcagatgaagcacctatgcaatacaatcaatagaatcaatggaagagaaagccaacttgcacagataatctaaagctagcggctaacatttctggtaatatagagcagctgcgataatataagtatgcctcttagaatttatattttcttcttgataatcctgcaggcacatatgagagaaatacatttaatttaatatcagcggaaggtttgagtagttatggaatgaaggaaccatgacactttagcaagcataccataacatcaatcagaaaaacaaactgttttgtacaatcaactaaccaccttcagatttaatttaggcacaattgatcggtggctgcaagcaacatggtcccatactctgatattgatttgtcttccaactcttaaacttaagacgcacttgaaggaatggcaggttatcctcAagatttgtctttccttgaaagatttgagaaacttcagtAaaaaaaaaaatcccttttttagcttgaccaacttatacttctattattctcatcaacgtgcttcacaaggaatagataaccaaaattgcatataacagccaatgaaaatttcattaccatattttccagacctaagaaaaaccattatattgtttgagatcacataaagtttaactcatgagcttccaaacctaggaaattaactatttcattttcatatatcataccttctattgccacggaaagccagtgctggaaacaatgggtagcatactgagacacatcatgctgattttgtttgggatcacagaatgactgagacgaaaaacttcagtatgtcagttcaaaactacaatagagtcatctagcctagttagaactgcaaaatagctagcaattctgtgacatttttgacacaattttttacaaacaaataaaattatagcaagcaaaaattattctaaattgttttgcgcaaaagctggctgaagacttaatttccaagccaatgcgtcaccagtaaacagagcagaatgacagcaaccctttcaattggaccaacccaaccaaaccacattaattctgtcaagcaatagaactaagtgaaaatttgaagtggccatattattctgccaatattctaattgcaaatagaaaacaatgatactggcagctgtttcaaagctaaaatacattgtagatcatgcaaagcaaatatcttgataattcaaatatggttgtaatctaattgaaaccatgtgatgtctacataacaaaaactatataatatatcatatatcaacaggcgtgtgagggcactgataagcAaaaacatgacaaatatagatgaaaatattaatttaaaccaaattgtatataaagaaatattgcaatggaaggaaatgttgtgaatataagcaactaatagagttgggatcaacctatcatttggggtaaaaagattgatttacttaaatggttacgctgatacttcctctattagatcaaagcggtaagaaataattccaattatcttacatttagctagtgtatgaattaagttagcggtaagaaataattccaatattccaatgcaatacagattacatattgtcccatgagtttttaggtctagcagaagtgtatgactataaccaagatctgtatggtagatattgtaGgagttgcaggctagatgaattttccattcaagcataatgtagacaagtctgtagaataagctttataGggataaacccttgtataatgtaaaaaataatggaatgagaggatcagttgcatacctccaaagtgaaaattgccactcggatctacatagttttaagaatcttaaacatcaaggaaatattcattcaacagctccatgcaaaatattaacttttttatatatgtaattacaaacggtgaagaaataccatggttttgttaatggattctttttgAaaaaaaatgttaataagtggcaacagaacatggttttacttaagataagtgatatggtactacaatttaagaaacaagaaaagaatgtaacttgtatgtaatttcttttgtccttagcaattttaatattttttctttccagtattagatattgtaagcatgcaacaaataacaactaaaaagttgtatagaacaatcatgtggtccaaattataaacgattcaaagtggaaatatcactgggatacattttatatttgtatttctacaaactggggttggcactcaacattacttatatgagaacaaaatgcataaccagtacatatacaaagcaaatcaagcaactgtgcaattcaatcAataggatttcacggttcatctgtatcggacaacctgcatttctgctcacatagagtagctgaacaatttgaaatgacatattggggactCccagattgacctaatgttggatggtgctgtgtgattccccgtttagtcggtagtttccttaagacgaacaatactgaagctgaaggtacaatctcaaccaaccatctaaggaaagtgaatgttatcaacaaaggatatcggtgagtacaattgttggtttgcacatgctcaaaatgacacaacataggattgtgttttgcagtttattcttggcacattttttaatggctagttgcaaaagctaaataaatttggtaggaattatcttttatgtcgattacttcacAaaaaatcaaaggatactccagtaacaaaagttcatttttaactcgttcagcaaaattgatatgttatactttcaaatggctagttacatgtagatctgttttcatcgcttcaactatgaatttgccatgattatccatagggaaaaagatagtcccattacacagatggaacaatggattgacaatttgtaaaagaatcaccatatagtatttttgctaaaaaaatgcctatgcgcagatacatgcacacacacgacttttgtgaaatgaatatttttttgttccctcttatatattctaccaaaatcaaattcttttagccataatctcgatagcattttcagctcaggtatttctctaaacacaattaatctattaggatataaacaaggcaaaggaaatatatctttcacaagtttatactataatctagcagtacgctttgTTTgcttccacaCcaattaaaatcatgttatAaatgatttcctcgaggtgaacatcacaagtggcaaatgaaaatgaataatgcagagctgctagcattaaatgacaatgctactaacagagatttatatgtaaatgtcatcagataaatgaaagcaatgtataagggttcaagattgagtattgaacatgcggatagagaaacctaccaaacagtagaagttaaaaattggatgattcagaatatgaagattgatttgtttattgaacgcattgaagcacatctcttaatatgctgtaagtaaagtaattaaagtctggagaccccccccccccccccccccccccccgccacaaacacacaaagaaagtaggaagatattgacataggacctactttcttttatacatctggtgaagaagccAggaaagcatatggtagtcacatatccaacgtgtgtgaaaggagatgtgttagaaatgcaaattattggaagtattaattctggaagagtggaagggatgacaatAaataaaagatagtaccgcattcatctttttacgccttccttagttcctttctattcaattgggaaacgctggaacatcaggaatagcctgcaaggataaccccaaaattgcagtcataacatgctatcgaaaaaaacaccacaaccagtaccaaataactgcatatgcatccaaccatgcattccaatttccaaattatctcatgtacaaaagcacatggacatgagtatagtctgtgggaaatgacttcagaaacatgcaaccttgtattgacaataccccataattcagaacttaaattgattttaatggaacctaaaccatggaaagtatatattgtctaccattggtaaccatatagatcataagtgcactcatgtgctgaattgagctgtagatcatgctagctcttggttctgctgaaaccagaaagcaccgaaaacctcatcattaaaatatgtgaatgtgttagtgatataaaaagcagttgccatactaaaaggtcatgtttattggtgtctagatcgatttctaaaaagacaaaaggcccagcttcccatgaatacattcaacatctcctggggctggggatacctcatcattaaaataaaagaaaacattagaaaataagagggaaaatttcatgagcagcacataagacaaaatataccttatgaagtaacaccttaaaaaaatTGtgcaaaaacgataccatctaagaacattgattccaagtgattcggtgagagtgaaacatataaaagggtcttatttatgtttttttaggaatatatggagaagctcgagcaagaatcattacataatatggcggacaaatttaagattagttcaaagggtctagaaaagtaatctattatcaactcttactcgacatcaagccatttttctatttgtagtgagaatgaagccgtgctgaaaagtgttaaaaaccaccaccatcgttaccacaaacaagttttctgtgtgccttgaaaaggaaaattgcaacataacttgattaccaatagcccaggaaaaaaatgtatttcaggggagataaaaacactaacatcatcgatgaacaacaaaatcccatactttctgtgtaacttgacaagctcaggccatggagcaaagtgaccatccatgctgaacatgctgcattacaacaaaaagatcatctgagttggttacgctagtcattgataccaaaataagtgatttttgaatagaaatataacttgtctatctgtgAaaaaaatattttccattgagcaatcggacctgctagcgtaatcacaaacatagtttataactaaatcaattagtgcttaacattatgacatgtatgttatgactgggaagtgaaaaaaatgcccatggattttaagtcctacacttactggaagatgtgaagcaaacaGagatggcaagatgcatgtcgtcctcgaagatcttgacgggcgcaaaccggcaaagagccggagttgctcagatgactatgctgctcgagcaataaggtcaagaggtcaagaaattggatcaagacaaaatgaaaagaaaagaacaagtgacattgtacctgtatctcccagcacctgtggcacagtgcataagcgacccacaacaacaagaagagaacaacacctctcattaatgagtgcaatctcaaatcggaatatgcacaagcgacctgttataagcaaacgtgaggctgcaacctgcatgctttccaaagttttttctaggtaatggaag
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| CDS seq | atgagaggtgttgttctcttcttgttgttgtgggtcgcttatgcactgtgccacaggtgctgggagatacagcatagtcatctgagcaactccggctctttgccggtttgcgcccgtcaagatcttcgaggacgacatgcatcttgccatctCtgtttgcttcacatcttccacatgttcagcatggatggtcactttgctccatggcctgagcttgtcaagttacacagaaagtatgggattttgttgttcatcgatgatgttagtgtttttatctcccctgaaatacatttttttcctgggctattggtaatcaagttatgttgcaattttccttttcaaggcacacagaaaacttgtttgtggtaa |
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| Protein seq | MRGVVLFLLLWVAYALCHRCWEIQHSHLSNSGSLPVCARQDLRGRHASCHLCLLHIFHMFSMDGHFAPWPELVKLHRKYGILLFIDDVSVFISPEIHFFPGLLVIKLCCNFPFQGTQKTCLW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0001500 | OsLima_09g0001500.01 | Chr09 | 2606491 | 2612006 | - | NAM | ||
| CDS seq | atgagaggtgttgttctcttcttgttgttgtgggtcgcttatgcactgtgccacaggtgctgggagatacagcatagtcatctgagcaactccggctctttgccggtttgcgcccgtcaagatcttcgaggacgacatgcatcttgccatctCtgtttgcttcacatcttccacatgttcagcatggatggtcactttgctccatggcctgagcttgtcaagttacacagaaagctattcctgatgttccagcgtttcccaattgaatag
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| Protein seq | MRGVVLFLLLWVAYALCHRCWEIQHSHLSNSGSLPVCARQDLRGRHASCHLCLLHIFHMFSMDGHFAPWPELVKLHRKLFLMFQRFPIE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0001500 | OsLima_09g0001500.02 | Chr09 | 2611092 | 2612006 | - | NAM | ||
| CDS seq | atgagaggtgttgttctcttcttgttgttgtgggtcgcttatgcactgtgccacaggtgctgggagatacagcatagtcatctgagcaactccggctctttgccggtttgcgcccgtcaagatcttcgaggacgacatgcatcttgccatctCtgtttgcttcacatcttccacatgttcagcatggatggtcactttgctccatggcctgagcttgtcaagttacacagaaagtatgggattttgttgttcatcgatgatgttagtgtttttatctcccctgaaatacatttttttcctgggctattggtaatcaagttatgttgcaattttccttttcaaggcacacagaaaacttgtttgtggtaa
More
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| Protein seq | MRGVVLFLLLWVAYALCHRCWEIQHSHLSNSGSLPVCARQDLRGRHASCHLCLLHIFHMFSMDGHFAPWPELVKLHRKYGILLFIDDVSVFISPEIHFFPGLLVIKLCCNFPFQGTQKTCLW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0001500 | OsLima_09g0001500.03 | Chr09 | 2606457 | 2606666 | - | IsoSeq | ||
| CDS seq | ctgtgcaagttggctttctcttccattgattctattgattgtatt |
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| Protein seq | LCKLAFSSIDSIDCI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.276806 | 0.544475 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0001500 | RBH | 3.155581 | 9.984031 | 35.535347 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0001470 | RBH | 1.121279 | 8.735510 | 12.841850 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0001500 | RBH | 1.939750 | 4.098622 | 24.241089 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0001390 | RBH | 0.146906 | 0.271831 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0001560 | RBH | 13.420608 | 29.683308 | 68.986671 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0001550 | RBH | 0.196690 | 0.719124 | 4.058068 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0001520 | RBH | 1.599611 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0001610 | RBH | 5.728841 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0001500 | RBH | 1.423974 | 0.0 | 2.005281 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0001530 | RBH | 0.199436 | 6.700055 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
