Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0001470 | OGI:09037980 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:2799816-2805228 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atcacttgggacacatttcatgtttgtatttctgcaaacttgggctggtgctatattcatatagaactcgacattactgatctgagaactcatatccggtacagaatcaaagcagatgaagcacctatgcaatacaatcaatagaatcaatggaagagaaagccaacttgcacagataatctaaagctagcggctaacatttctggtaatatagagcagctgcgataatataagtatgcctcttagaatttatattttcttcttgataatcctgcaggcacatatgagagaaatacatttaatttaatatcagcggaaggtttgagtagttatggaatgaaggaaccatgacattttagcaagcataccataacatcaatcagaaaaacaaactgttttgtacaatcaactaaccaccttcagatttaatttaggcacaattgatcggtggctgcaagcaacatggtcccatactctgatattgatttgtcttccaactcttaaacttaagacgcacttgaaggaatggcaggttatcctcaagatttgtctttccttgaaagatttgagaaacttcagtaaaaaaaaaaatcccttttttagcttgaccaacttatacttttattattctcatcaacgtgcttcacaaggaatagataaccaaaattgcatataacagccaatgaaaatttcattaccatattttccagacctaagaaaaaccattatattgttagagatcacataaagtttaactcatgagcttccaaacctaggaaattaactatttcattttcatatatcataccttctattgccacggaaagccagtgctggaaacaatgggtagcatactgagacacatcatgctgattttgtttgggatcacagaatgactgagacgaaaaacttcagtatgtcagttcaaaactacaatagagtcatctagcctagttagaactgcaaaatagctagcaattctgtgacatttttttgacacaattttttacaaacaaataaaattatagcaagcaaaaattattctaaattgttttgcgcaaaagctggctgaagacttaatttccaagccaatgcgtcaccagtaaacagagcagaatgacagcaaccctttcaattggaccaacccaaccaaaccacattaattctgtcaagcaatagaactaagtgaaaatttgaagtggccatattattctgccaatattctaattgcaaatagaaaacaatgatactggcagctgtttcaaagctaaaatacattgtagatcatgcaaagcaaatatcttgataattcaaatatggttgtaatctaattgaaaccatgtgatgtctacataacaaaaactatataatatatcatatatcaacaggcgtgtgagggcactgataagcaaaacatgacaaatatagatgaaaatattaatttaaaccaaattgtatataaagaaatattacaatggaaggaaatgttgtgaatataagcaactaatagagttgggatcaacctatcatttggggtaaaaagattgttttacttaaatggttacgctgatacttcctctattagatcaaagcggtaagaaataattccaattatcttacatttagctagtgtatgaattaagttagcggtaagaaataattccaatattccaatgcaatacagattacatattgtcccatgagtttttaggtctagcagacgtgtatgactataaccaagatctgtatggtagatattgtaggagttgcaggctagatgaattttccattcaagcataatgtagacaagtctgtagaataagctttatagggatagacccttgtataatgtaaaaaataatagaatgagaggatcagttgcatacctccaaagtgaaaattgccactcggatctacatagttttaagaatcttaaacatcaaggaaatattcattcaacagctccatgcaaaatattaacttttttatatatgtaattacaaacggtgaagaaataccatggttttgttaatggattctttttgaaaaaaaatgttaataagtggcaacagaacatggttttacttaagataagtgatatggtactacaatttaagaaacaagaaaagaatgtaacttgtatgtaatttcttttgtccttagcaattttaatattttttctttccagtattagatattgtaagcatgcaacaaataacaactaaaaagttgtatagaacaatcatgtggtccaaattataaacgattcaaagtggaaatatcactgggatacattttatatttgtatttctacaaactggggttggcactcaacattacttatatgagaacaaaatgcataaccagtacatatacaaagcaaatcaagcaactgtgcaattcaatcaataggatttcacggttcatctgtatcggacaacctgcatttctgctcacatagagtagctgaacaatttgaaatgacatattggggactcccagattgacctaatgttggatggtgctgtgtgattccccgtttagtcggtagtttccttaagacgaacaatactgaagctgaaggtacaatctcaaccaaccatctaaggaaagtgaatgttatcaacaaaggatatcggtgagtacaattgttggtttgcacatgctcaaaatgacacaacataggattgtgttttgcagtttattcttggcacattttttaatggctagttgcaaaagctaaataaatttggtaggaattatcttttatgtcgattacttcacaaaaatccaaggatactccagtaacaaaagttcatttttaactcgttcagcaaaattgatatgttatactttcaaatggctagttacatgtagatctgttttcatcgcttcaactatgaatttgccatgattatccatagggaaaaagatagtcccattacacagatggaacaatggattgacaatttgtaaaagaatcaccatatagtatttttgctaaaaaaaatgcctatgcgcagatacatgcacacacacgacttttgtgaaatgaatatttttttgttccctcttatatattctaccaaaatcaaattcttttagccataatctcgatagcattttcagctcaggtatttctctaaacacaattaatctattaggatataaacaaggcaaaggaaatatatctttcacaagtttatactataatctagcagtatgctttgtttgcttccacaccaattaaaatcatgttataaatgatttcctcgaggtgaacatcacaagtggcaaatgaaaatgaataatgcagagctgctagcattaaatgacaatgctattaacagagatttatatgtaaatgtcatcagataaatgaaagcaatgtataagggttcaagattgagtattgaacatgcgaatagagaaacctaccaaacagtagaagttaaaaattggatgattcagaatatgaagattgatttgtttattgaacgcattgaagcacatctcttaatatgctgtaagtaaagtaattaaagtctggagaccccccccccccccccgccacaaacacacaaagaaagtaggaagatattgacataggacctactttcttttatacatctggtcaagaagccaggaaagcatatggtagtcacatatccaacgtgtgtgaaaggagatgtgttagaaatgcaaattattggaagtattaattctggaagagtggaagggatgacaataaataaaagatagtaccgcattcatctttttacgccttccttagttcctttctattcaattgggaaacgctggaacatcaggaatagcctgcaaggataaccccaaaattgcagtcataacatgctatcgaaaaaaaacaccacaaccagtaccaaataactgcatatgcatccaaccatgcattccaatttccaaattatctcatgtacaaaagcacatggacatgagtatagtctgtgggaaatgacttcagaaacatgcaaccttgtattgacaataccccataattcaaaacttaaattgattttaatggaacctaaaccatggaaagtatatattgtctaccattggtaaccatatagatcataagtgcactcatgtgctgaattgagctgtagatcatgctagctcttggttctgctgaaaccagaaagcaacgaaaacctcatcattaaaatatgtgaatgtgttagtgatataaaaagcagttgccatactaaaaggtcatgtttattggtgtctagatcgatttctaaaaagacaaaaggcccagcttcccatgaatacattcaacatctcctggggctggggatacctcatcattaaaataaaagaaaacattagaaaataagagggaaaatttcatgagcagcacataagacaaaatataccttgtgaagtaacaccttaaaaaatttgtgcaaaaacgataccatctaagaacattgattccaagtgattcggtgagagtgaaacatataaaagggtcttatttatgtttttttaggaatatatggagaagctcgagcaagaatcattacataatatggcggacaaatttaagattagttcaaagggtctagaaaagtaatctattatcaactcttactcgacatcaagccatttttctatttgtagtgagaatgaagccgtgctgaaaagtgttaaaaaccaccaccatcgttaccacaaacaagttttctgtgtgccttgaaaaggaaaattgcaacataacttgattaccaatagcccaggaaaaaaatgtatttcaggggagataaaaacactaacatcatcgatgaacaacaaaatcccatactttctgtgtaacttgacaagctcaggccatggagcaaagtgaccatccatgctgaacatgctgcattacaacaaaaagatcatctgagttggttacgctagtcattgataccaaaataagtgatttttgaatagaaatataacttgtctatctgtgaaaaaaatattttccattgagcaatcggacctgctagcgtaatcacaaacatagtttataactaaatcaattagtgcttaacattatgacatgtatgttatgactgggaagtgaaaaaaaatgcccatggattttaagtcctacacttactggaagatgtgaagcaaacagagatggcaagatgcatgtcgtcctcgaagatcttgacgggcgcaaaccggcaaagagccggagttgctcagatgactatgctgctcgagcaataaggtcaagaggtcaagaaattggatcaagacaaaatgaaaagaaaagaacaagtgacattgtacctgtatctcccagcacctgtggcacagtgcataagcgacccacaacaacaagaagagaacaaaacctctcattaatgag
More
|
||||||||||
| CDS seq | atgagaggttttgttctcttcttgttgttgtgggtcgcttatgcactgtgccacaggtgctgggagatacagcatagtcatctgagcaactccggctctttgccggtttgcgcccgtcaagatcttcgaggacgacatgcatcttgccatctctgtttgcttcacatcttccacatgttcagcatggatggtcactttgctccatggcctgagcttgtcaagttacacagaaagtatgggattttgttgttcatcgatgatgttagtgtttttatctcccctgaaatacatttttttcctgggctattggtaatcaagttatgttgcaattttccttttcaaggcacacagaaaacttgtttgtggtaa |
||||||||||
| Protein seq | MRGFVLFLLLWVAYALCHRCWEIQHSHLSNSGSLPVCARQDLRGRHASCHLCLLHIFHMFSMDGHFAPWPELVKLHRKYGILLFIDDVSVFISPEIHFFPGLLVIKLCCNFPFQGTQKTCLW |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0001470 | OsKeNa_09g0001470.06 | Chr09 | 2799817 | 2805221 | - | NAM | ||
| CDS seq | atgagaggttttgttctcttcttgttgttgtgggtcgcttatgcactgtgccacaggtgctgggagatacagcatagtcatctgagcaactccggctctttgccggtttgcgcccgtcaagatcttcgaggacgacatgcatcttgccatctctgtttgcttcacatcttccacatgttcagcatggatggtcactttgctccatggcctgagcttgtcaagttacacagaaagtatgggattttgttgttcatcgatgatgctattcctgatgttccagcgtttcccaattga
More
|
|||||||
| Protein seq | MRGFVLFLLLWVAYALCHRCWEIQHSHLSNSGSLPVCARQDLRGRHASCHLCLLHIFHMFSMDGHFAPWPELVKLHRKYGILLFIDDAIPDVPAFPN |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0001470 | OsKeNa_09g0001470.02 | Chr09 | 2799816 | 2805221 | - | NAM | ||
| CDS seq | atgagaggttttgttctcttcttgttgttgtgggtcgcttatgcactgtgccacaggtgctgggagatacagcatagtcatctgagcaactccggctctttgccggtttgcgcccgtcaagatcttcgaggacgacatgcatcttgccatctctgtttgcttcacatcttccacatgttcagcatggatggtcactttgctccatggcctgagcttgtcaagttacacagaaagtatgggattttgttgttcatcgatgatgctattcctgatgttccagcgtttcccaattga
More
|
|||||||
| Protein seq | MRGFVLFLLLWVAYALCHRCWEIQHSHLSNSGSLPVCARQDLRGRHASCHLCLLHIFHMFSMDGHFAPWPELVKLHRKYGILLFIDDAIPDVPAFPN |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0001470 | OsKeNa_09g0001470.05 | Chr09 | 2799817 | 2805221 | - | NAM | ||
| CDS seq | atgagaggttttgttctcttcttgttgttgtgggtcgcttatgcactgtgccacaggtgctgggagatacagcatagtcatctgagcaactccggctctttgccggtttgcgcccgtcaagatcttcgaggacgacatgcatcttgccatctctgtttgcttcacatcttccacatgttcagcatggatggtcactttgctccatggcctgagcttgtcaagttacacagaaagctattcctgatgttccagcgtttcccaattgaatag
More
|
|||||||
| Protein seq | MRGFVLFLLLWVAYALCHRCWEIQHSHLSNSGSLPVCARQDLRGRHASCHLCLLHIFHMFSMDGHFAPWPELVKLHRKLFLMFQRFPIE |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0001470 | OsKeNa_09g0001470.04 | Chr09 | 2799817 | 2805221 | - | NAM | ||
| CDS seq | atgagaggttttgttctcttcttgttgttgtgggtcgcttatgcactgtgccacaggtgctgggagatacagcatagtcatctgagcaactccggctctttgccggtttgcgcccgtcaagatcttcgaggacgacatgcatcttgccatctctgtttgcttcacatcttccacatgttcagcatggatggtcactttgctccatggcctgagcttgtcaagttacacagaaagtatgggattttgttgttcatcgatgatgctattcctgatgttccagcgtttcccaattga
More
|
|||||||
| Protein seq | MRGFVLFLLLWVAYALCHRCWEIQHSHLSNSGSLPVCARQDLRGRHASCHLCLLHIFHMFSMDGHFAPWPELVKLHRKYGILLFIDDAIPDVPAFPN |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0001470 | OsKeNa_09g0001470.03 | Chr09 | 2799817 | 2805221 | - | NAM | ||
| CDS seq | atgagaggttttgttctcttcttgttgttgtgggtcgcttatgcactgtgccacaggtgctgggagatacagcatagtcatctgagcaactccggctctttgccggtttgcgcccgtcaagatcttcgaggacgacatgcatcttgccatctctgtttgcttcacatcttccacatgttcagcatggatggtcactttgctccatggcctgagcttgtcaagttacacagaaagtatgggattttgttgttcatcgatgatgctattcctgatgttccagcgtttcccaattga
More
|
|||||||
| Protein seq | MRGFVLFLLLWVAYALCHRCWEIQHSHLSNSGSLPVCARQDLRGRHASCHLCLLHIFHMFSMDGHFAPWPELVKLHRKYGILLFIDDAIPDVPAFPN |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0001470 | OsKeNa_09g0001470.01 | Chr09 | 2804410 | 2805228 | - | NAM | ||
| CDS seq | atgagaggttttgttctcttcttgttgttgtgggtcgcttatgcactgtgccacaggtgctgggagatacagcatagtcatctgagcaactccggctctttgccggtttgcgcccgtcaagatcttcgaggacgacatgcatcttgccatctctgtttgcttcacatcttccacatgttcagcatggatggtcactttgctccatggcctgagcttgtcaagttacacagaaagtatgggattttgttgttcatcgatgatgttagtgtttttatctcccctgaaatacatttttttcctgggctattggtaatcaagttatgttgcaattttccttttcaaggcacacagaaaacttgtttgtggtaa
More
|
|||||||
| Protein seq | MRGFVLFLLLWVAYALCHRCWEIQHSHLSNSGSLPVCARQDLRGRHASCHLCLLHIFHMFSMDGHFAPWPELVKLHRKYGILLFIDDVSVFISPEIHFFPGLLVIKLCCNFPFQGTQKTCLW |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0001470 | OsKeNa_09g0001470.07 | Chr09 | 2799817 | 2805221 | - | NAM | ||
| CDS seq | atgagaggttttgttctcttcttgttgttgtgggtcgcttatgcactgtgccacaggtgctgggagatacagcatagtcatctgagcaactccggctctttgccggtttgcgcccgtcaagatcttcgaggacgacatgcatcttgccatctctgtttgcttcacatcttccacatgttcagcatggatggtcactttgctccatggcctgagcttgtcaagttacacagaaagtatgggattttgttgttcatcgatgatgctattcctgatgttccagcgtttcccaattga
More
|
|||||||
| Protein seq | MRGFVLFLLLWVAYALCHRCWEIQHSHLSNSGSLPVCARQDLRGRHASCHLCLLHIFHMFSMDGHFAPWPELVKLHRKYGILLFIDDAIPDVPAFPN |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0001470 | OsKeNa_09g0001470.08 | Chr09 | 2799847 | 2800890 | - | IsoSeq | ||
| CDS seq | atgtttctcaaatctttcaaggaaagacaaatcttgaggataacctgccattccttcaagtgcgtcttaagtttaagagttggaagacaaatcaatatcagagtatgggaccatgttgcttgcagccaccgatcaattgtgcctaaattaaatctgaaggtggattatcaagaagaaaatataaattctaagaggcatacttatattatcgcagctgctctatattaccagaaa
More
|
|||||||
| Protein seq | MFLKSFKERQILRITCHSFKCVLSLRVGRQINIRVWDHVACSHRSIVPKLNLKVDYQEENINSKRHTYIIAAALYYQK |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr09 | 2800370 | 2800624 | - | OsKeNa_09g0001470.02,OsKeNa_09g0001470.04,OsKeNa_09g0001470.05 | OsKeNa_09g0001470.03,OsKeNa_09g0001470.02,OsKeNa_09g0001470.04,OsKeNa_09g0001470.05 | All |
| A3 | Chr09 | 2800365 | 2800624 | - | OsKeNa_09g0001470.02,OsKeNa_09g0001470.04,OsKeNa_09g0001470.05 | OsKeNa_09g0001470.07,OsKeNa_09g0001470.02,OsKeNa_09g0001470.04,OsKeNa_09g0001470.05 | All |
| A3 | Chr09 | 2800365 | 2800624 | - | OsKeNa_09g0001470.03 | OsKeNa_09g0001470.07,OsKeNa_09g0001470.03 | All |
| SE | Chr09 | 2800086 | 2800624 | - | OsKeNa_09g0001470.02 | OsKeNa_09g0001470.06,OsKeNa_09g0001470.02 | All |
| SE | Chr09 | 2800086 | 2800624 | - | OsKeNa_09g0001470.03 | OsKeNa_09g0001470.06,OsKeNa_09g0001470.03 | All |
| SE | Chr09 | 2800086 | 2800624 | - | OsKeNa_09g0001470.04,OsKeNa_09g0001470.05 | OsKeNa_09g0001470.06,OsKeNa_09g0001470.04,OsKeNa_09g0001470.05 | All |
| SE | Chr09 | 2800086 | 2800624 | - | OsKeNa_09g0001470.07 | OsKeNa_09g0001470.06,OsKeNa_09g0001470.07 | All |
| SE | Chr09 | 2800388 | 2800624 | - | OsKeNa_09g0001470.08 | OsKeNa_09g0001470.08,OsKeNa_09g0001470.02,OsKeNa_09g0001470.04,OsKeNa_09g0001470.05 | All |
| A5 | Chr09 | 2800086 | 2800233 | - | OsKeNa_09g0001470.02 | OsKeNa_09g0001470.03,OsKeNa_09g0001470.02,OsKeNa_09g0001470.07,OsKeNa_09g0001470.05,OsKeNa_09g0001470.04 | All |
| A5 | Chr09 | 2800086 | 2800230 | - | OsKeNa_09g0001470.02 | OsKeNa_09g0001470.08,OsKeNa_09g0001470.02 | All |
| A5 | Chr09 | 2803652 | 2804665 | - | OsKeNa_09g0001470.02,OsKeNa_09g0001470.03,OsKeNa_09g0001470.04,OsKeNa_09g0001470.06,OsKeNa_09g0001470.07 | OsKeNa_09g0001470.03,OsKeNa_09g0001470.02,OsKeNa_09g0001470.06,OsKeNa_09g0001470.07,OsKeNa_09g0001470.05,OsKeNa_09g0001470.04 | All |
| A5 | Chr09 | 2800086 | 2800233 | - | OsKeNa_09g0001470.08 | OsKeNa_09g0001470.03,OsKeNa_09g0001470.08,OsKeNa_09g0001470.07,OsKeNa_09g0001470.05,OsKeNa_09g0001470.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.121279 | 8.735510 | 12.841850 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0381300 | SBH | 0.000000 | 0.000000 | 1.114078 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0381300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0001500 | RBH | 3.155581 | 9.984031 | 35.535347 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0001500 | RBH | 1.939750 | 4.098622 | 24.241089 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0001390 | RBH | 0.146906 | 0.271831 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0001560 | RBH | 13.420608 | 29.683308 | 68.986671 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0001550 | RBH | 0.196690 | 0.719124 | 4.058068 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0001500 | RBH | 0.276806 | 0.544475 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0001520 | RBH | 1.599611 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0001610 | RBH | 5.728841 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0001500 | RBH | 1.423974 | 0.0 | 2.005281 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0001530 | RBH | 0.199436 | 6.700055 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
