Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0024700 | OGI:08080120 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:28935001-28936450 | ||||||||
| Gene Symbol | ERF90, OsERF#090, OsERF090, OsERF90, AP2/EREBP#071, AP2/EREBP71 | ||||||||||
| DNA seq | atgcaaaagttaatagctgaagttaggcaactgtcattgaactcaacgcaagtagaacgcgtgaggtacggtcggctggtttagctatatatctatatggttttagatagtcacctgaaattaattaaagaatgactcgacctacataaattaggcgtactgatgcatgaccggatcgatcatcccgaacacgtaatatatactctatgaatatttgatgccattgacttttttaaatatgtttgatcattcgtcttattaaaaaaattaagtaattattaattcttttcctatcatttgattcattgttaaatatatttatatgtatacatataattttacatatttcataaaagtttttgaataggacgaacgatcaaacatgtactaaaaatttgaacggtgtcaaatatttagaaacggaGgGATtatagatatgcattcgatcaagctctctgaaaccacgagacctgctttattattatatatgttatttagtaacattactatatatatgttttttttagttagctaattacaggcagagagcaacaagggatggatgcagaggagcgaccggggcccatcttccacaatctatgtgatcacttgagcgcgagagaatcggcatcttcctctctgctttcaataacgcgatcacaaattgcatctccattatcttgagctcccttagggcttaagctcggaagctgctcttaaatacaagtccaggcccctagccatttccagcgccgtcgcagctgcagctagatagctatatatatatagcgtaatcgatcgatcggttaagcattatattcagagacatatatatatatactccatgcatagctagctagctgagctgaatgatcgatccatggaatagatcagtagctagctatcattagatatatatacttacaatattattagcacacccctgcatccccggtccgatccgtaacagtagtagctagttaatttgattattgtccgtccgcggccggtcagtggtcgcaatcgatcgatcgatatcatggacggcgacggcggcggcggatgggacgatcagggcaacggcggcggcgagacgaccaagtaccgtggcgtgcgtcgccggccttctggcaagttcgcggcggagatccgtgactccagcaggcagagcgtccgcgtctggctgggaaccttcgacaccgccgaggaggctgcgcgggcttacgaccgcgccgcctacgccatgcgcggccacctcgccgtcctcaacttccctgctgaggcgcgcaactacgtgcggggatcaggctcgtcgtcctcgtcccgacagcatcagcagcggcaggtgatcgagctggagtgcctagacgaccaagtgctgcaagagatgctcaagggcggcgacgatcagtacaggtcagcatctgggagcaagaggaataactactag
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| CDS seq | atgcaaaagttaatagctgaagttaggcaactgtcattgaactcaacgcaagtagaacgcgtgaggcagagcgtccgcgtctggctgggaaccttcgacaccgccgaggaggctgcgcgggcttacgaccgcgccgcctacgccatgcgcggccacctcgccgtcctcaacttccctgctgaggcgcgcaactacgtgcggggatcaggctcgtcgtcctcgtcccgacagcatcagcagcggcaggtgatcgagctggagtgcctagacgaccaagtgctgcaagagatgctcaagggcggcgacgatcagtacaggtcagcatctgggagcaagaggaataactactag |
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| Protein seq | MQKLIAEVRQLSLNSTQVERVRQSVRVWLGTFDTAEEAARAYDRAAYAMRGHLAVLNFPAEARNYVRGSGSSSSSRQHQQRQVIELECLDDQVLQEMLKGGDDQYRSASGSKRNNY |
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| Function | Ethylene-responsive transcription factor ERF098 [UniProtKB/Swiss-Prot:Q9LTC5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0024700 | OsLima_08g0024700.01 | Chr08 | 28935001 | 28936450 | + | NAM | ||
| CDS seq | atgcaaaagttaatagctgaagttaggcaactgtcattgaactcaacgcaagtagaacgcgtgaggcagagcgtccgcgtctggctgggaaccttcgacaccgccgaggaggctgcgcgggcttacgaccgcgccgcctacgccatgcgcggccacctcgccgtcctcaacttccctgctgaggcgcgcaactacgtgcggggatcaggctcgtcgtcctcgtcccgacagcatcagcagcggcaggtgatcgagctggagtgcctagacgaccaagtgctgcaagagatgctcaagggcggcgacgatcagtacaggtcagcatctgggagcaagaggaataactactag
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| Protein seq | MQKLIAEVRQLSLNSTQVERVRQSVRVWLGTFDTAEEAARAYDRAAYAMRGHLAVLNFPAEARNYVRGSGSSSSSRQHQQRQVIELECLDDQVLQEMLKGGDDQYRSASGSKRNNY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0474000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g44960 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0474000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0025720 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0025480 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0025480 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0025730 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0025520 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0449800 | RBH | 0.011079 | 0.2669115 | 0.0391095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0025290 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0468600 | RBH | 0.0298335 | 0.5972495 | 0.0880105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0020660 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0025040 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0024860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0025770 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0025040 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G025210 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0025370 | RBH | 0.0 | 0.0 | 0.0 |
