Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0474000 | OGI:08067580 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:23353856-23355003 | ||||||||
| Gene Symbol | ERF104, DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152, ERF106, DERF7, OsDERF7, OsERF#106, OsERF106, AP2/EREBP#111, AP2/EREBP111, ERF90, OsERF#090, OsERF090, OsERF90, AP2/EREBP#071, AP2/EREBP71 | ||||||||||
| DNA seq | ACTTCAAACTCACACCGAGACGAGAGCTCAGCAGCCAGCAGCGAGAGAACACAAACTCACATGACCAACCGGATCTCCGCCATGGGAGGCAACCAGGAGTACATGATCCGATTCGACGGCCACATCGACGATGCCTCGCCGAGCTCCGCCACTGCAGAGCCACCGCCGCCGCTGCCGCCGCCGCGTCCCTTCGCCGGGAGGGCGATCTCGGCCGAGAGGGAGCACTCTGTGATCGTCGCGACGCTGCTCCATGTCATCTCCGGCTACAGGACGCCGCCGCCGGAGGTGTTCCCGGCGGCGCGCGCGGAGGTGTGCGGGGTTTGCGGGATGGACCAGTGCCTCGGGTGCGAGTTCTTCGCCGGGGAGTCCGGGGTGGTGTCGTTCGATGGCGCGGAGAAGGTGGCGGCGGCGGCCGCCGCGGCGGCGGCTGGCGCCGCGGCGGGGCAGAGGAGGAGGAGGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGAAGTGGGCTGCGGAGATCCGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACAGCAATGGCGACGCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCGCAGACGCCGACGAGCAAGTAGAGCACACGCGGTGGCCGCAGGGAGGAGGAGGCGGCGGCGGCGGCGGCGGCGGCGAGACAGGGGACCAGCTCTGGGAAGGCTTGCAAGACCTGATGCAGCTGGACGAAGGCGGGCTCAGCTGGTTCCCACAGTCGTCAGATTCTTGGAATTGAACGTTGTGATTAGATCCCAGCCGTTGGAATAGCTTGAAACAAAGAAGGCAGATTAACTAGAGTTTTTTTTTTCTCCTTTTCTTTTTCTATTTTCTATTGGCTCTGGTGTACTAATTGAACAAAGCAGAGTTTGTAAATTATCCATAGAGTTGACTACTAAACTGTATTGAACAAACAATTTTTGTGTACTTTTTGTAATGCACAGCAAGGAAAACGAGCTGAGTTGCTGACTGGTAGCT
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| CDS seq | TTCAAACTCACACCGAGACGAGAGCTCAGCAGCCAGCAGCGAGAGAACACAAACTCACATGACCAACCGGATCTCCGCCATGGGAGGCAACCAGGAGTACATGATCCGATTCGACGGCCACATCGACGATGCCTCGCCGAGCTCCGCCACTGCAGAGCCACCGCCGCCGCGGCGGCGGCTGGCGCCGCGGCGGGGCAGAGGAGGAGGAGGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGAAGTGGGCTGCGGAGATCCGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACAGCAATGGCGACGCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCGCAGACGCCGACGAGCAAGTAGAGCACACGCGGTGGCCGCAGGGAGGAGGAGGCGGCGGCGGCGGCGGCGGCGGCGAGACAGGGGACCAGCTCTGGGAAGGCTTGCAAGACCTGATGCAGCTGGACGAAGGCGGGCTCAGCTGGTTCCCACAGTCGTCAGATTCTTGGAATTGA
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| Protein seq | FKLTPRRELSSQQRENTNSHDQPDLRHGRQPGVHDPIRRPHRRCLAELRHCRATAAAAAAGAAAGQRRRRKKKNKYRGVRQRPWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAYDRAAVEFRGPRAKLNFPFPEQLSAHDDSNGDASAAAKSDTLSPSPRSADADEQVEHTRWPQGGGGGGGGGGGETGDQLWEGLQDLMQLDEGGLSWFPQSSDSWN |
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| Function | Ethylene-responsive transcription factor ERF112 [UniProtKB/Swiss-Prot:P93007] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0474000 | OsNip_08t0474000-01 | Chr08 | 23353856 | 23354936 | + | RAP2018-11-26 | ||
| CDS seq | TTCAAACTCACACCGAGACGAGAGCTCAGCAGCCAGCAGCGAGAGAACACAAACTCACATGACCAACCGGATCTCCGCCATGGGAGGCAACCAGGAGTACATGATCCGATTCGACGGCCACATCGACGATGCCTCGCCGAGCTCCGCCACTGCAGAGCCACCGCCGCCGCGGCGGCGGCTGGCGCCGCGGCGGGGCAGAGGAGGAGGAGGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGAAGTGGGCTGCGGAGATCCGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACAGCAATGGCGACGCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCGCAGACGCCGACGAGCAAGTAGAGCACACGCGGTGGCCGCAGGGAGGAGGAGGCGGCGGCGGCGGCGGCGGCGGCGAGACAGGGGACCAGCTCTGGGAAGGCTTGCAAGACCTGATGCAGCTGGACGAAGGCGGGCTCAGCTGGTTCCCACAGTCGTCAGATTCTTGGAATTGA
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| Protein seq | FKLTPRRELSSQQRENTNSHDQPDLRHGRQPGVHDPIRRPHRRCLAELRHCRATAAAAAAGAAAGQRRRRKKKNKYRGVRQRPWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAYDRAAVEFRGPRAKLNFPFPEQLSAHDDSNGDASAAAKSDTLSPSPRSADADEQVEHTRWPQGGGGGGGGGGGETGDQLWEGLQDLMQLDEGGLSWFPQSSDSWN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0474000 | OsNip_08t0474000-02 | Chr08 | 23353863 | 23355003 | + | IsoSeq | ||
| CDS seq | ATGTCATCTCCGGCTACAGGACGCCGCCGCCGGAGGTGTTCCCGGCGGCGCGCGCGGAGGTGTGCGGGGTTTGCGGGATGGACCAGTGCCTCGGGTGCGAGTTCTTCGCCGGGGAGTCCGGGGTGGTGTCGTTCGATGGCGCGGAGAAGGTGGCGGCGGCGGCCGCCGCGGCGGCGGCTGGCGCCGCGGCGGGGCAGAGGAGGAGGAGGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGAAGTGGGCTGCGGAGATCCGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACAGCAATGGCGACGCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCGCAGACGCCGACGAGC
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| Protein seq | MSSPATGRRRRRCSRRRARRCAGFAGWTSASGASSSPGSPGWCRSMARRRWRRRPPRRRLAPRRGRGGGGRRRTSTAACGSGHGGSGLRRSATLAERCASGWGRSTPPRRPPGRTTAPPSSSAARAPSSTSRSPSSSPRTTTAMATPAPPPSPTHCLRRRAAQTPTS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0457900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g36920 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0474000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0019300 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0019180 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0019090 | RBH | 0.388511 | 0.0 | 0.610792 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0019330 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0019180 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0372100 | RBH | 2.489885 | 295.0124055 | 4.6859925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0019100 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0391400 | RBH | 0.9820965 | 117.892452 | 0.277254 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0018410 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0018690 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0018530 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0019370 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0018730 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G018890 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0019040 | RBH | 0.0 | 0.0 | 0.0 |
