Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0014260 | OGI:08054230 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:18991383-18992163 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggggattgaacttgttgcattggatttagctcataggagcatataaacttagtacaatgggaaaagacataaatgcccttaactaatatacatatactcttaacacatacacattgcatttgaaactaaatactaaattaatgacacactaggataaatccaaagtccatgcttgaagatgtcgtcgaagtgtgcaatttttttttttttggatgatgacgatgaagaagaaaagatccatctcctcctcaatgaagtggacctcggagccttcacaaactgttcttcggccctcggtaccttgaagccttcacgaaccgttcttcggctcttcattgattcagagacattgacgatgatggaaggtccttcacaaaatgttcttcggaccttcatagatctgatgacgacgatgatggtgatgatgaaggaccttcacaaattgttcttcggtccttcactgattgatgatgatgccagctccgatgggatgctgatggcgtgatagactaactccgatagagagttggtaatgatggtatgatgacgaggactgacaccaatgagaagtcagggaaatgatagactagcacgacttcgacaaattgaaggatatgcagtaggctttgatggactcaagagaaatcataagaaattgattcgtcgaggatattgatctattagtaaatgacttaggatactagcaaaagacattagcaaaggaatgatgctatagcagcagcaaagacactacaaaagcagacataattatctccaaaac
More
|
||||||||||
| CDS seq | atgtcgtcgaagtgtgcaatttttttttttttggatgatgacgatgaagaagaaaagatccatctcctcctcaatgaagtggacctcggagccttcacaaactgttcttcggccctcggtaccttgaagccttcacgaaccgttcttcggctcttcattgattcagagacattgacgatgatggaaggtccttcacaaaatgttcttcggaccttcatagatctgatgacgacgatgatggtgatgatgaaggaccttcacaaattgttcttcggtccttcactgattgatgatgatgccagctccgatgggatgctgatggcgtga |
||||||||||
| Protein seq | MSSKCAIFFFLDDDDEEEKIHLLLNEVDLGAFTNCSSALGTLKPSRTVLRLFIDSETLTMMEGPSQNVLRTFIDLMTTMMVMMKDLHKLFFGPSLIDDDASSDGMLMA |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0014260 | OsLima_08g0014260.01 | Chr08 | 18991383 | 18992163 | + | NAM | ||
| CDS seq | atgtcgtcgaagtgtgcaatttttttttttttggatgatgacgatgaagaagaaaagatccatctcctcctcaatgaagtggacctcggagccttcacaaactgttcttcggccctcggtaccttgaagccttcacgaaccgttcttcggctcttcattgattcagagacattgacgatgatggaaggtccttcacaaaatgttcttcggaccttcatagatctgatgacgacgatgatggtgatgatgaaggaccttcacaaattgttcttcggtccttcactgattgatgatgatgccagctccgatgggatgctgatggcgtga
More
|
|||||||
| Protein seq | MSSKCAIFFFLDDDDEEEKIHLLLNEVDLGAFTNCSSALGTLKPSRTVLRLFIDSETLTMMEGPSQNVLRTFIDLMTTMMVMMKDLHKLFFGPSLIDDDASSDGMLMA |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.095186 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g10400 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007460 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0014660 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007640 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0004610 | SBH | 0.000000 | 0.241824 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0014690 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0291600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0014700 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0314500 | RBH | 0.154649 | 0.0520525 | 1.796939 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0004700 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0014340 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0014240 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0014990 | RBH | 0.150048 | 0.0 | 0.228392 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0014390 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G014430 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0004660 | SBH | 0.000000 | 0.000000 | 5.280186 |
