Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g10400 | OGI:10019560 | 13/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:5714332-5716013 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGTCAACACCATCCATGCTGTCGAGTATCAAAGGCTTCTTGTTCTCCTCTCTTCTGAAAAGTAGACAATAAACCTACAAAATAACAGACAATAAAAATCACTGGAAAACACAAGAGATCGAATCTTGAAGAGTCCAGCAAATTGCTGAATAACCAATTAAAAGCTAAATCATTCCAGCAGGTGATGTGCTATCGCAGAGATACTCGGTATGTTACCATTTCAACGAATCACAATGCTCCATATGTAGTGAACAAATATTTCATTACAACCACAAAATTGACACTACGCGACAGTGATGAAACTGTTAAGTATAGTAGTATGTCAAGGGTATTAGAGTACTTTCCCCTCTCTTGTGTTCCCCCTCTCTTGTGTACATATATGTCATTTAGGGCCAAATCAATACAAGATTGAAATCCCCTAATCTCTCTCTTACCTTGAGATGGTATCAGAGCCTTACTGCTAATCCTACCCACCAAGTTCCCATCGGCGGCACGCCGGCGGCGGTCGCCGCCGGCGAGCCATTGTCTCGTACTACCGTCGTCTTCGTCAAGTTGTTGGTAGCATCGTTGTTCGTCGTCCCGTCCTCAAGCCTGTCAAGCAGCAGTCAGGAGCATCGTCCTTCCTCATCCACACGCATCAGTGCACGCCGCCGGCGGCAACCCCGTCCAAGCTGTCAGCCATGTCGTCCCCGCTGCGGCTCGTCGTCAATCGCGAAGCCGTCCTCACCAGCCGTCGTCCTCGCTGCCCGTCGCAGCGCTCGTCAACGGCATCTGTCACTGCCGCTCGTCGCGGCGTGCATCTCCTCACCAGCTCCACACCTCGCTGCCTGTCGTAACCCCTTGCGTGGCGCCGGTCCTCTCCGCCAATCAGGCCCTGTCACCCGTTTGTAGCAGAGCAAGCAGCTGCCGCTGCCGGCAGATCCTTCAGTCTTGGCTATTGCCTGTAAACTGCACAAGTCCATATGCTGCACACAAGGTGCTCGACAAAATGCTTCAAAGAGTTGCTCCCAGCTTGTGGTCATGCTTTTGCCTTTCCAATTTGGTGCTTTACTGAAAGTATTCGTGGTCTCTCATTACCATCTCCTGTCCATCTTCATCAGCTACTTCTCTCTGCTACCAAATTGGATAGAATTAATCAGTTAATATGCAATTCCTTGGCAGCCACAATTATGTCTTTTGCTAGCATATCAATGTCCTCTACAAATTGATTTCCTTTGTTTCCTATGATCCTATCTAGTTTATCCATTAAAGCCTTGCTGCATATCTATTAGTATCATTGTGTCATTTACTAGTTGCCATTCAATCCATCCAAGTCCATTGCATATTCTTCAATCCGTCCAATTGATCTCCAGCTTCATATCAGCTCTCCGTCGGAATTGGTCTATCACTTCACCAGCTCCACATCGGAGCTGGTCTGTCATATCACCATCTCCCCATCGGAGTTGACATCATCATCACTCAATGAAGGACTGAAGAACAATTTGTGAAGGTCCTTTATCAGATCTATGAAGGTCCGAAGAACAGTTTGTGAAGGGCCTTCCATCATCGTCAACGTCTCTGAATCAATGAAGAGCCGAAGAACGAGTCGTGAAGGCTTCAAGGTACCGAGGGCCGAAGAACAGTTTGTGAAGGCTCCGAGGTCCACTTCATTGAAGAGGAGATGGATCTTTTTCTTCTTCAT
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| CDS seq | ATGAAGAAGAAAAAGATCCATCTCCTCTTCAATGAAGTGGACCTCGGAGCCTTCACAAACTGTTCTTCGGCCCTCGGTACCTTGAAGCCTTCACGACTCGTTCTTCGGCTCTTCATTGATTCAGAGACGTTGACGATGATGGAAGGCCCTTCACAAACTGTTCTTCGGACCTTCATAGATCTGATAAAGGACCTTCACAAATTGTTCTTCAGTCCTTCATTGAGTGATGATGATGTCAACTCCGTTTGGTAG |
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| Protein seq | MKKKKIHLLFNEVDLGAFTNCSSALGTLKPSRLVLRLFIDSETLTMMEGPSQTVLRTFIDLIKDLHKLFFSPSLSDDDVNSVW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g10400 | LOC_Os10g10400.1 | Chr10 | 5714332 | 5716013 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAGAAGAAAAAGATCCATCTCCTCTTCAATGAAGTGGACCTCGGAGCCTTCACAAACTGTTCTTCGGCCCTCGGTACCTTGAAGCCTTCACGACTCGTTCTTCGGCTCTTCATTGATTCAGAGACGTTGACGATGATGGAAGGCCCTTCACAAACTGTTCTTCGGACCTTCATAGATCTGATAAAGGACCTTCACAAATTGTTCTTCAGTCCTTCATTGAGTGATGATGATGTCAACTCCGTTTGGTAG
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| Protein seq | MKKKKIHLLFNEVDLGAFTNCSSALGTLKPSRLVLRLFIDSETLTMMEGPSQTVLRTFIDLIKDLHKLFFSPSLSDDDVNSVW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05280 | RBH | 0.616433 | 0.000000 | 0.266606 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0004710 | RBH | 0.000000 | 2.654668 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0004660 | RBH | 0.000000 | 0.0 | 0.677441 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0004590 | RBH | 0.0 | 0.000000 | 1.730851 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003150 | SBH | 0.163130 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0004680 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0041800 | SBH | 4.4232855 | 1.880602 | 1.194004 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0004860 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0108200 | RBH | 0.3357685 | 1.277922 | 1.174207 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0004720 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0004700 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0004840 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0057700 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0004960 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004260 | SBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004130 | SBH | 0.0 | 0.0 | 0.000000 |
