Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0004960 | OGI:10019560 | 13/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:6440096-6441777 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagtcaacaccatccatgctgtcgagtatcaaaggcttcttgttctcctctcttctgaaaagtagacaataaacctacaaaataacagacaataaaaatcactggaaaacacaagagatcgaatcttgaagagtccagcaaattgctgaataaccaattaaaagctaaatcattccagcaggtgatgtgctatcgcagagatactcggtatgttaccatttcaacgaatcacaatgctccatatgtagtgaacaaatatttcattacaaccacaaaattgacactacgcgacagtgatgaaactgttaagtgtagtagtatgtcaagggtattagagtactttcccctctcttgtgttcccctctctttgtgtacatatatgtcatttagggccaaatcaatacaagattgaaatcccctaatctctctcttaccttgagatggtatcagagccttactgctaatcctacccaccaagttcccatcggcggcacgccggcggcggtcgccgccggcgagccattgtctcgtactaccgtcgtcttcgtcaagttgttggtagcatcgttgttcgtcgtcccgtcctcaagcctgtcaagcagcagtcaggagcatcgtccttcctcatccacacgcatcagtgcacgccgccggcggcaaccccgtccaagctgtcagccatgtcgtccccgctgcggctcgtcgtcaatcgcgaagccgtcctcaccagccgtcgtcctcgctgcccgtcgcagcgctcgtcaacggcatctgtcactgccgctcgtcgcggcgtgcatctcctcaccagctccacacctcgctgcctgtcgtaaccccttgcgtggcgccggtcctctccgccaatcaggccctgtcacccgtttgtagcagagcaagcagctgccgctgccggcagatccttcagtcttggctattgcctgtaaactgcacaagtccatatgctgcacacaaggtgctcgacaaaatgcttcaaagagttgctcccagcttgtggtcatgcttttgcctttccaatttggtgctttactgaaagtattcgtggtctctcattaccatctcctgtccatcttcatcagctacttctctctgctaccaaattggatagaattaatcagttaatatgcaattccttggcagccacaattatgtcttttgctagcatatcaatgtcctctacaaattgatttcctttgtttcctatgatcctatctagtttatccattaaagccttgctgcatatctattagtatcattgtgtcatttactagttgccattcaatccatccaagtccattgcatattcttcaatccgtccaattgatctccagcttcatatcagctctccgtcggaattggtctatcacttcaccagctccacatcggagctggtctgtcatatcaccatctccccatcggagttgacatcatcatcactcaatgaaggactgaagaacaatttgtgaaggtcctttatcagatctatgaaggtccgaagaacagtttgtgaagggccttccatcatcgtcaacgtctctaaatcaatgaagagccgaagaacgagtcgtgaaggcttcaaggtaccgagggccgaagaacagtttgtgaaggctccgaggtccacttcattgaagaggagatggatctttttcttcttcat
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| CDS seq | atgaagaagaaaaagatccatctcctcttcaatgaagtggacctcggagccttcacaaactgttcttcggccctcggtaccttgaagccttcacgactcgttcttcggctcttcattgatttagagacgttgacgatgatggaaggcccttcacaaactgttcttcggaccttcatagatctgataaaggaccttcacaaattgttcttcagtccttcattgagtgatgatgatgtcaactccgatggggagatgagagaagtagctgatgaagatggacaggagatggtttattgtctacttttcagaagagaggagaacaagaagcctttgatactcgacagcatggatggtgttgactaa |
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| Protein seq | MKKKKIHLLFNEVDLGAFTNCSSALGTLKPSRLVLRLFIDLETLTMMEGPSQTVLRTFIDLIKDLHKLFFSPSLSDDDVNSDGEMREVADEDGQEMVYCLLFRREENKKPLILDSMDGVD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0004960 | OsLaMu_10g0004960.01 | Chr10 | 6440096 | 6441777 | - | NAM | ||
| CDS seq | atgaagaagaaaaagatccatctcctcttcaatgaagtggacctcggagccttcacaaactgttcttcggccctcggtaccttgaagccttcacgactcgttcttcggctcttcattgatttagagacgttgacgatgatggaaggcccttcacaaactgttcttcggaccttcatagatctgataaaggaccttcacaaattgttcttcagtccttcattgagtgatgatgatgtcaactccgatggggagatgagagaagtagctgatgaagatggacaggagatggtttattgtctacttttcagaagagaggagaacaagaagcctttgatactcgacagcatggatggtgttgactaa
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| Protein seq | MKKKKIHLLFNEVDLGAFTNCSSALGTLKPSRLVLRLFIDLETLTMMEGPSQTVLRTFIDLIKDLHKLFFSPSLSDDDVNSDGEMREVADEDGQEMVYCLLFRREENKKPLILDSMDGVD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g10400 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0004710 | RBH | 0.000000 | 2.654668 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0004660 | RBH | 0.000000 | 0.0 | 0.677441 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0004590 | RBH | 0.0 | 0.000000 | 1.730851 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0004610 | SBH | 0.000000 | 0.241824 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0004680 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0004860 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0108200 | RBH | 0.3357685 | 1.277922 | 1.174207 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0004720 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0004700 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0004840 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0057700 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0004680 | SBH | 0.127657 | 0.192618 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G004880 | SBH | 0.021252 | 0.031000 | 1.076031 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0004830 | RBH | 0.000000 | 0.000000 | 0.000000 |
