Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0013680 | OGI:08052180 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:18253055-18260029 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgacggcggcgccgacgccacggcggccagatctggcggtggtggagcgggatgacgactggcggcggtggtagcatcttgtggatgcggtggttgcgggcgccggtgacggagggtgtggctggcggcggcgggcgaacagcgcagaggcgctggagacggaggcggaggccgcgacggcggcggaggggcaggaggtgcgtgggtgacggcgagggccggggggggctatggctggccgatgccggcatgttgtggctgacagccgtgcagccggtagccatgcagcgtggccagcgatgtcgaggactgctggcatgtgatggctgtgcagcatgaggcgaagccgatggagacggagcccggcgaggtagctgcacgtgaagactggctggcggggggcgccggtgcgatgtgcccacacgccggcggaagtttagttggcggtggagcagtggtgcatgtatggtagattggcaggtggtggatggcgggtgaaaacccagctcggccttggccgaaccaacaatgatgacgctcgagtgtcattttccctcctgagggcgttgtcgtgctgtctcacaccttaagggcggttgccgggagaaagcctagtcttggctctcttgagtccttgacggacggcggcggcggtgttccgcgaaatggctaacgggcgatcgatcgcccctagcgcgccccctctcctccacgtggtttccttttttggcaccacattactttcctattttagtaaatttatgcacctaaagtttatacacctcaagtttacacatctaaaagtttacatacccgattcaaatttgaatttaaattatatccgattcatatttgaatttgaattcaaatattttttatatatagtatttctatacatctaaagtatatatacctaaagtttatagacccaaattttataagttaaaagtttacatacccgattcaaatttaaatttgaattatatttgattcaaatttgaatttgaattcaaatatattttatatatagtatttctatgcatctaaagtttatacatctaaagtttatagacccaaagtttataagtcaaaagtttacatacccgatacaaatttgaatttgaattcaaatattagtttatagacccaaagtttataagtcaaaagtttacatacccgtttcaaatttgaatttgaattcaaattttttatatatagtatttctgtgcataaattttccaactttgttttttctaaaaaaaaatattatggtatactgtagtaggaagagaagaaggggaggaggaaagggggagaggaagagcgtacagggggagggacgggtgatcgctaggaggagaggaaggtgatcacccgcccactagcaatacccggtgttccgttgctcccctccacacaattactatgatattttttagttttacccataaaaatgatttttttttagtctgacaatcaacatggagcaatttttccctgttaatccagccattattgtatctgaaaaagttttgcaaatgcagtatttaattattgtaataggtaagggctcctttgtaacaaaggaaaaggtgatgaaatataggagtgcaatcctataaaaaataatccgactctgttgcagattggcttccacaaaattctatgatattctagaggaatggcccatttcacaagaactttggtggaaaactaacaagttcctatggaatacctatttcatgagaatttcggtgagaaactaacatgggatcggttagcctatggttaaaaacgatgggttctcgtaaaaccgctgatcattatttgtggtaacgagcgttttagttggttttcgtacaatattgactgaaaatcgttggtttttgctagttttcattgatttttgataaatcggtgaggagcggtttttattttgaaaacgagaagaactctagcctcgtgttttctcttccttggtccaaaagtaactatgattttgttttagtgccaccaacaacatttgttacaaattcacgtgatcaattggattgaacaatttgttcatatgttttttctgctcttatgattccaaaaatatacttccgtcgttctaaaatattttgggatggaaggagtacatttcggagcttaaaaacccttttgttttatataatattttcttcgtttcatatcataagtaatagtcaattttttatgcttaatcaagtttataaaaataattagcaacttaactccaaattagtttcgttaaatatagcatcgaatatattttaataatatgtttactttgtgttgtaaatactactatattttttatttaaacttatcaaacttaaacaagtgtgacttaaaaaaacaaagctgtttataatataaaatggaggaagtaataaataaaaataaatacagaactacaaatcttggcgggggggtcaacggtcaactttgacataaagctcaacatccaaacatagtatttattagtactcctaaaatctacatgcaagcatgtcacatcaacatgttaagtacaaaacctcaagatacaagcatataataattatatctataatttatttcattccaaaactaaacatacacatactaaatcattattcttaaatcattttcataatatttcaattcgaatgatttcatcatttctctgttatctaatatatatcccgcagcaaagtgcgaagcattatctagttactgtaataagggctcctttgtaacaaaggaaaatgtgatgaaatgaaagattgcaatcctatgaaaaataatccgactctgctctagattggcttccacaaaattctatgatattccaggggaatggcccatttctacaagaattttggtggaaaactaacaaattcctactatgaaaatacctatttcatagaattttggtgagaaactaacttggaaccggttgacctagggttccaaaaacgatcggttctcgtaaaaccactgatcattagtttgtggtaacaagcgttttagttagttttcgtacaacattgactaaaaatcgttggtttttactggtttttgtagattttttataaatcggtgaggagcggtttttattttggaaacgagaaggagaactctagcctcgtgctttctcttccttactcgaaaagtaactatgattttcttttagtgccaccaacaacatttgtcacaaattcatgtgatcaattggattgaacaatttgttcatatgttttttttctgttaatacgatttcaaaaatatacttccgtagttccaaaatattttggaatggaaggagtacatttcgaagctctaaacccttttgttttagataatatttctctgtttcatcctatcataagttatcaaacttttttatgtttaatcaattttatagaaataattagcaatataactctaaattagtttcgttaaatctagcaccaaatatattttaataatatgtttactttgtgttgtaagtactaatatgtttttctatataaacttatcgaacttaaacaagtagtttgcttaaaaagctgtttataatataaaactgaggaagtaatataaataaaaataaatacagaattacaaatgcgttcttggcgggggtcaacggtcaactttgtacgcgacacacacacaacgcaacacagtacagtaggcaggccattgctgtcgtgtcgactgaaggaaacgagccctcctccccttccaccattctcaccttctccgatctctcatccttcccatggtggggacgacggaggtggagggcatcgaggcgctcgtccgccgcctcaggctgtaccagccgcctccctccccgtacgacggcgcctcgaccacggcggccggcggcggcggcgagctgttccggccgcggagggccgccgtgctggtctgcctcttccgccgcggcggaggcgacggcgagctccgcgtcatcctcaccaagcgatcctcctccctctccacccactccggtgagctcgcttccttccttccttcctcctccctcgcatcgccttcgcgtggtgtggtgtggtgtggggggggtccgttgggcgatcgggcgcgagtgcgatcgatcggattcttgcgggtaagctcggagatttgtcggcagcggggctcgccattgcggtccatgcgagcggtaggttggggaatgtggggggaggggggcgggcattccctaggcgctttcttctttccatcggtccccaagggggattggccgttagttcttggcatttttgctaaggtcaatgaagcaaatataattgtttctgagagcatagaggagcaagagttcgtgattttttggtggattttgttcaggtattttagtggcatagatgtaagtttcttctgtttctagtgtcctctacggtgcctatagtagtttatataaaaaatattagagtaaatttcacaaaaatacaggtattttgaccaaattatcacaaaactacaactacagatttaatgtgttgtatcacaaaactacaactacagatttagcatcaaatttatcacaaaactacagttttaaggttaagtatcacaaaaatgcatatttaatattgaagttatcacaaaactacaacttggagtttagatccctagcaccattgttatattggagctataaacattattgctttctgactaaattggttctaaacttgtagtcttgtggtaatttagttaataaacatgtagttttgtgacacttcatcataaatgtgtagttttgtgatacaccgagttaaatctgtagttttgtgataattttgtcatagtattatgttagactgaaacattttttctttttgggggtgaggggggggggggtgttaatagatagttcacaaatatgatagggagtcactttctagtttctaccatgtgggtgattcattcatgaagttagtttacaaatgatatagttgtttctctcttgtcttgtccacttcaacattattagccaactggcttttgtggaatgttttgaacaaacaatttgtacagatgattggacttatactaggaacatcatagcatttcttacttcggtgtctacttgagaaaaacaagtagggtgcatcagaatttacaaattttaagcgacttggcctcacctcaggaattgtttgagcaacttgagatttggttctgaagtgaaatgaaacaagctgactttctgaaatacttttgaaaccaagcctgctcatatattttcttgttatagattttgagtttggggacttgagctcacaaatggtctcaagataggtttggcttacacaagagttataaattgagcttctggctctactagagagctgacttggtttgagacagcatattcaggtgagctgatccaaatgtagtctgccctggctcattttatctaaacttgcttcaactacaccccaaagtgttgatggatgctcatagatgcccaatgctgcttctatgctttttcttaactaagtttcttgcctaaatttgagattgtcaggggaggttgcattgccaggagggaaggctgaggaaggtgatgctgatgatgcagcaacagcactgagagaggcaaaggaggagattgggcttgatccttctttggtcactgttgttgcctctttagagcatttcttgtcaaaggtgcaatgcctttcggtcttcttttacatcgaaactgaaattttttcttagatcagagaaaactgtgttgcaatgcatcaatagaaaatagggaaatctttttttattttttttctggtgttacaaatacaaatctttatacattcttgcagcatcttctggtggttgttcctattgttggcatcctctcagatatagaagcatttaagcctgttcttaatgtcgatgaggtagatgacatttttgatgtaccgctggagatgttcctcaaggtcagtttatttatcttcttactgtattaattaaaaggcatcacattgtttgtactttatgagtagtaaattttttacatccttcattccatgttcatgacatactgacatttgcagtttactgtacaaaataacaattcactgttaaaaatgtccaggcataactgccatagttaccatgctgcagtgatttactttggaacatgctctgttatgtacgttgaactgctttggaaagttaccagaattgcatgggttaatacagtaaattaattattatgtgcaaataatggcaaaagaaatctgcttcttttttcTttttttttgggacattgtgacatccaatccattctggaacgctgcaggatgaaaataggacatctgaggagcgcgaaaagatggggcagacattcacaattcattacttcaattatgagaaagagaaccagaagtacttaatctggggcctgactgcacgcatcttaattcatgctgcttcagttgtataccagcgcccaccagactttcccgagcgaagagtacatttcaacctgccaaagttctgaaggggtcgttggcagtgccatggatcagcatatactaaatactgttaacttactatggagactcaattataccgattgaagagcatagcggaaaaaaaaatcccaaaaaaggttgctggagaatatatattttctattctttgcaccattctttacacaacacgctgatgttaacatttgttgatgctgagttatctgagtaacccccatttgctccctgttgatgtcaccaaacagttgcactaatacagttgggttttatatgtgaagtataaatcaaatttagtgtgttgagtgcgttgttcagtcactcaattaggatcagatgtttgtgaaaacctaccaaattgctgatactgttgatgctcaattgttccattccttctgaaacctgttttttctgcagtgttatctttttgtt
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| CDS seq | atggcgacggcggcgccgacgccacggcggccagatctggcggtgcatcttgtggatgcggtggttgcgggcgccggtgacggagggtgtggctggcggcggcgggcgaacagcgcagaggcgctggagacggaggcggaggccgcgacggcggcggaggggcaggagcatgaggcgaagccgatggagacggagcccggcgagttggcggtggagcagtggtgcatgtatggtagattggcaggtggtggatggcgggtgaaaacccagctcggccttggccgaaccaacaatgatgacgctcgagtgtcattttccctcctgagggcgttgtcgaaacgagccctcctccccttccaccattctcaccttctccgatctctcatccttcccatggtggggacgacggaggtggagggcatcgaggcgctcgtccgccgcctcaggctgtaccagccgcctccctccccgtacgacggcgcctcgaccacggcggccggcggcggcggcgagctgttccggccgcggagggccgccgtgctggtctgcctcttccgccgcggcggaggcgacggcgagctccgcgtcatcctcaccaagcgatcctcctccctctccacccactccggggaggttgcattgccaggagggaaggctgaggaaggtgatgctgatgatgcagcaacagcactgagagaggcaaaggaggagattgggcttgatccttctttggtcactgttgttgcctctttagagcatttcttgtcaaagcatcttctggtggttgttcctattgttggcatcctctcagatatagaagcatttaagcctgttcttaatgtcgatgaggtagatgacatttttgatgtaccgctggagatgttcctcaaggatgaaaataggacatctgaggagcgcgaaaagatggggcagacattcacaattcattacttcaattatgagaaagagaaccagaagtacttaatctggggcctgactgcacgcatcttaattcatgctgcttcagttgtataccagcgcccaccagactttcccgagcgaagagtacatttcaacctgccaaagttctga
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| Protein seq | MATAAPTPRRPDLAVHLVDAVVAGAGDGGCGWRRRANSAEALETEAEAATAAEGQEHEAKPMETEPGELAVEQWCMYGRLAGGGWRVKTQLGLGRTNNDDARVSFSLLRALSKRALLPFHHSHLLRSLILPMVGTTEVEGIEALVRRLRLYQPPPSPYDGASTTAAGGGGELFRPRRAAVLVCLFRRGGGDGELRVILTKRSSSLSTHSGEVALPGGKAEEGDADDAATALREAKEEIGLDPSLVTVVASLEHFLSKHLLVVVPIVGILSDIEAFKPVLNVDEVDDIFDVPLEMFLKDENRTSEEREKMGQTFTIHYFNYEKENQKYLIWGLTARILIHAASVVYQRPPDFPERRVHFNLPKF |
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| Function | Nudix hydrolase 15, mitochondrial [UniProtKB/Swiss-Prot:Q8GYB1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0013680 | OsLima_08g0013680.01 | Chr08 | 18253055 | 18260029 | + | NAM | ||
| CDS seq | atggcgacggcggcgccgacgccacggcggccagatctggcggtgcatcttgtggatgcggtggttgcgggcgccggtgacggagggtgtggctggcggcggcgggcgaacagcgcagaggcgctggagacggaggcggaggccgcgacggcggcggaggggcaggagcatgaggcgaagccgatggagacggagcccggcgagttggcggtggagcagtggtgcatgtatggtagattggcaggtggtggatggcgggtgaaaacccagctcggccttggccgaaccaacaatgatgacgctcgagtgtcattttccctcctgagggcgttgtcgaaacgagccctcctccccttccaccattctcaccttctccgatctctcatccttcccatggtggggacgacggaggtggagggcatcgaggcgctcgtccgccgcctcaggctgtaccagccgcctccctccccgtacgacggcgcctcgaccacggcggccggcggcggcggcgagctgttccggccgcggagggccgccgtgctggtctgcctcttccgccgcggcggaggcgacggcgagctccgcgtcatcctcaccaagcgatcctcctccctctccacccactccggggaggttgcattgccaggagggaaggctgaggaaggtgatgctgatgatgcagcaacagcactgagagaggcaaaggaggagattgggcttgatccttctttggtcactgttgttgcctctttagagcatttcttgtcaaagcatcttctggtggttgttcctattgttggcatcctctcagatatagaagcatttaagcctgttcttaatgtcgatgaggtagatgacatttttgatgtaccgctggagatgttcctcaaggatgaaaataggacatctgaggagcgcgaaaagatggggcagacattcacaattcattacttcaattatgagaaagagaaccagaagtacttaatctggggcctgactgcacgcatcttaattcatgctgcttcagttgtataccagcgcccaccagactttcccgagcgaagagtacatttcaacctgccaaagttctga
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| Protein seq | MATAAPTPRRPDLAVHLVDAVVAGAGDGGCGWRRRANSAEALETEAEAATAAEGQEHEAKPMETEPGELAVEQWCMYGRLAGGGWRVKTQLGLGRTNNDDARVSFSLLRALSKRALLPFHHSHLLRSLILPMVGTTEVEGIEALVRRLRLYQPPPSPYDGASTTAAGGGGELFRPRRAAVLVCLFRRGGGDGELRVILTKRSSSLSTHSGEVALPGGKAEEGDADDAATALREAKEEIGLDPSLVTVVASLEHFLSKHLLVVVPIVGILSDIEAFKPVLNVDEVDDIFDVPLEMFLKDENRTSEEREKMGQTFTIHYFNYEKENQKYLIWGLTARILIHAASVVYQRPPDFPERRVHFNLPKF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.119933 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0376200 | RBH | 0.444310 | 0.219303 | 0.815789 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g28860 | RBH | 0.271551 | 0.309070 | 0.476083 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0376200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0014210 | RBH | 0.122723 | 5.927510 | 2.439177 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0014090 | RBH | 0.049145 | 1.509297 | 1.357535 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0014100 | RBH | 0.0 | 5.898048 | 3.451912 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0014310 | RBH | 0.0 | 0.167608 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0014120 | RBH | 0.0 | 4.646312 | 3.376505 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0278800 | SBH | 1.910243 | 3.8707085 | 3.993994 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0014170 | RBH | 0.053497 | 0.512342 | 0.406648 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0301500 | SBH | 1.4867865 | 2.3781795 | 4.2404055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0013650 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013730 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013630 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0014420 | RBH | 0.0 | 0.0 | 0.464756 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0013780 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013760 | RBH | 0.0 | 1.477454 | 1.627755 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0013930 | SBH | 0.173638 | 2.284445 | 2.853243 |
