Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0013650 | OGI:08052110 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:18247969-18251667 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcgcagacccaagtgccaaagctttccatgtccaccgatctcaccatcccaccttccatggaggcacccggcgccgacatccaggcgctcatccagcgcctcaggctccaccgcccgcgcccctccccgtacgccgccgcggcggccccctcgcccgacgcggccgcgccgccggccgagctgctgttccgccctcggagggccgccgtgctgatctgcctcttccgcggcgccgcccgcgagctccgtgtcctcctcaccaagcgctcctccaaactctcctcccactccggtgagctgtcctcggtatcatcgatcccaatcttttttctgcttctcctcgatatgatcgatcgatcggatactttgggcaaggtgagaagcctttgaggggaatgggtcaaattactggttatagtcttatagagtatcgccatttccagtgcttcttctttttacgattcgtaggtgaattgctgtttcgggcgtataccgctgcgaatttcTttttttttttttggaagaagttgcaaagcaataaactataatcgagtactacagttctaaattgtaatctcttacagaaatcttaggctgtcatcgattaatccaaggacgattttaccgtggtctcagctattccattaatgtggagggtggcgtttatgatgaaaccttttttttttcctcggcagagtctttgaccctatttatttggcgtaaatatatagcaagcatccaatgagcatcgatcatatttaaaaaatggtatcaattttgcattgacattagtgacataaaccatggcataataataggatggtggcctgacagttgtttgtcatgatatacgcgaaatggaccacatttgttttctgatgctggtttcacatattttagttatcctgagcacatgaggagcgtacttgcggtgttttgttgagttaacagtttggacaaatggttggaattgattgcatggttggatgctgataatgacattgaatctttggtgcttgcttggacaagtagggtgcaccagatgctaacaatatgcttcaaaaactatcatgcaatgcttgtactatgcaatattctaaggtgcatatgggctggtctccttatcagtgttgcactgttgctgctggcctaactgggtgcccttttttccctggtccacggaaaggctttgagctcagcaattgatttagatagggtaaataaaataatatgagttggttccttaattccaaacccatacaaccttcttttctgctctgctcgttttggctgccacagattcaagctaaaaaatggtcctttagctgatccatctttttggctgcctcagagagcttgcttagctcaaattggcttctgaaacctgcttgatttttatttcttccatctggggtttgcaggggaggtttctttgccaggaggaaaggctgaggagggtgatgctgatgatgcagcaacagcattaagggaggcaaaggaggagattggacttgatccagcttctgttactgttgttgcctctcttgagcacttcttgtcaaaggtagaataccatttggctctcccttacaccacatgaaacagcaaggaagatggaactatacaccattttccttaataatattttagaaccaaacacgggcaactaaaccaacttgactcaggatctgcttatagatgttttgatgcataagctgctaactgttctttccaaaatcctttcttgtttggtagcaatcatgtttgcatgccacagaaaaccatattgtactttagtgctttgaattgatatcatgcatcgcaaatgaaacttcattctcaaagactgaatattaaaattgtaagttgaaacgaaccaaattttgttaccaatgttactgtgggactataggtctttgcatggtgcacattattttttcattgaaggaactgtgaacatggtcacttttgctgtcttagttgtcttgtttaggttttgattacatctgaaggctagtcttactagtatgatccgtctgttgatggatcatttcacatgtcatttagctaatttgtcctttgaagtttgaattgtgctcgccacatgttttattaagactaacttggtacttgtgccttgtcatgtcgtgaggtcaagtgaaactcatatagaaaattatccaaaattttcaattcattttacacatataaagttagtctcttcaaattgaattagctgggagaggctaattctatgttttttcatgtaaattactaactttgttgcactgttgcaattctaaaatgtagttcctttgcttcgcttcaatacttaatatccaactccactacaattcttatgctgttgtgccccactgttttaattacttttagtttgtttctactagcaatcagtaataagattactcttacaatgtcatcatcaggattaatattctccatatttttggcagcatcttctggtagttgtccctgttgttggcatactctctgatatacaagcatttaaacctgttcttaatgttgatgaggtggatagcattttcgatgtacccttggagatgtttctcaaggttggtattatcactgtcttttccaccatgctaattaaaggaccacacacatttccaggcttttatgtgaacctgggttgcatgtttgtgatatttccaacttataacaaaaaaacaaaggagaccagtttattgtgtaaaagataccaaccacatagttttccatactgtagttttctgtacagtggtaatataggttagagtttagacttaaccagaatagcatactattatagttttttttttcaacatatggaacaaactaggggataaagaaaccacttattttactgaaatcatggaatatctcagtgacttggtgtcatttctatcttcaacctgctgatcaaatactgcaggatgagaaaaggacatctgaggagcgtgaatggatgggacaagaattcacaattcattacttcaattacgagaaagggagtgagaagtacgtaatatggggtctgactgctggcatcctgatacatgctgcttcagttgtattccagcggccaccagactttcctgcacgaacagtgcaattcaacttgccgaagtactcaaaggagtgttcttcaatgccatgagcagcacctgtgaaacactaatgtttacaatacaatttcagttgtagaccattggggtgtacagcagagcagatttcatctcaaaagattggtactgaatcaaaaggttgttttatagtttatattctttgcacattttttgtacataatactatgagaacattaacatttatgaaaatgttaatgctattcgagtacaccccaaatccctgattagatgggagttatccattataaatatgggtacccattagtccgctagttttactaaaaacacactttttctttatttctttatttgtaggtgaaatagagttgggcaatgggcacctatggattaaactactgtcatccctacccccagttgtcccaataagtattgatgtaaacaaagacttgtactaaaacagtttgtaatatgtcaaaatcaggttgagtccattatttagttagtgctggaagcttgtaaattcactttgtacttcttacccagttgattcttcattaatctgcttcctcaa
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| CDS seq | atgtccaccgatctcaccatcccaccttccatggaggcacccggcgccgacatccaggcgctcatccagcgcctcaggctccaccgcccgcgcccctccccgtacgccgccgcggcggccccctcgcccgacgcggccgcgccgccggccgagctgctgttccgccctcggagggccgccgtgctgatctgcctcttccgcggcgccgcccgcgagctccgtgtcctcctcaccaagcgctcctccaaactctcctcccactccggggaggtttctttgccaggaggaaaggctgaggagggtgatgctgatgatgcagcaacagcattaagggaggcaaaggaggagattggacttgatccagcttctgttactgttgttgcctctcttgagcacttcttgtcaaagcatcttctggtagttgtccctgttgttggcatactctctgatatacaagcatttaaacctgttcttaatgttgatgaggtggatagcattttcgatgtacccttggagatgtttctcaaggatgagaaaaggacatctgaggagcgtgaatggatgggacaagaattcacaattcattacttcaattacgagaaagggagtgagaagtacgtaatatggggtctgactgctggcatcctgatacatgctgcttcagttgtattccagcggccaccagactttcctgcacgaacagtgcaattcaacttgccgaagtactcaaaggagtgttcttcaatgccatga
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| Protein seq | MSTDLTIPPSMEAPGADIQALIQRLRLHRPRPSPYAAAAAPSPDAAAPPAELLFRPRRAAVLICLFRGAARELRVLLTKRSSKLSSHSGEVSLPGGKAEEGDADDAATALREAKEEIGLDPASVTVVASLEHFLSKHLLVVVPVVGILSDIQAFKPVLNVDEVDSIFDVPLEMFLKDEKRTSEEREWMGQEFTIHYFNYEKGSEKYVIWGLTAGILIHAASVVFQRPPDFPARTVQFNLPKYSKECSSMP |
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| Function | Nudix hydrolase 15, mitochondrial [UniProtKB/Swiss-Prot:Q8GYB1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0013650 | OsLima_08g0013650.01 | Chr08 | 18247969 | 18251667 | + | NAM | ||
| CDS seq | atgtccaccgatctcaccatcccaccttccatggaggcacccggcgccgacatccaggcgctcatccagcgcctcaggctccaccgcccgcgcccctccccgtacgccgccgcggcggccccctcgcccgacgcggccgcgccgccggccgagctgctgttccgccctcggagggccgccgtgctgatctgcctcttccgcggcgccgcccgcgagctccgtgtcctcctcaccaagcgctcctccaaactctcctcccactccggggaggtttctttgccaggaggaaaggctgaggagggtgatgctgatgatgcagcaacagcattaagggaggcaaaggaggagattggacttgatccagcttctgttactgttgttgcctctcttgagcacttcttgtcaaagcatcttctggtagttgtccctgttgttggcatactctctgatatacaagcatttaaacctgttcttaatgttgatgaggtggatagcattttcgatgtacccttggagatgtttctcaaggatgagaaaaggacatctgaggagcgtgaatggatgggacaagaattcacaattcattacttcaattacgagaaagggagtgagaagtacgtaatatggggtctgactgctggcatcctgatacatgctgcttcagttgtattccagcggccaccagactttcctgcacgaacagtgcaattcaacttgccgaagtactcaaaggagtgttcttcaatgccatga
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| Protein seq | MSTDLTIPPSMEAPGADIQALIQRLRLHRPRPSPYAAAAAPSPDAAAPPAELLFRPRRAAVLICLFRGAARELRVLLTKRSSKLSSHSGEVSLPGGKAEEGDADDAATALREAKEEIGLDPASVTVVASLEHFLSKHLLVVVPVVGILSDIQAFKPVLNVDEVDSIFDVPLEMFLKDEKRTSEEREWMGQEFTIHYFNYEKGSEKYVIWGLTAGILIHAASVVFQRPPDFPARTVQFNLPKYSKECSSMP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0013650 | OsLima_08g0013650.02 | Chr08 | 18247969 | 18251652 | + | NAM | ||
| CDS seq | atgtccaccgatctcaccatcccaccttccatggaggcacccggcgccgacatccaggcgctcatccagcgcctcaggctccaccgcccgcgcccctccccgtacgccgccgcggcggccccctcgcccgacgcggccgcgccgccggccgagctgctgttccgccctcggagggccgccgtgctgatctgcctcttccgcggcgccgcccgcgagctccgtgtcctcctcaccaagcgctcctccaaactctcctcccactccggggaggtttctttgccaggaggaaaggctgaggagggtgatgctgatgatgcagcaacagcattaagggaggcaaaggaggagattggacttgatccagcttctgttactgttgttgcctctcttgagcacttcttgtcaaagcatcttctggtagttgtccctgttgttggcatactctctgatatacaagcatttaaacctgttcttaatgttgatgaggtggatagcattttcgatgtacccttggagatgtttctcaaggatgagaaaaggacatctgaggagcgtgaatggatgggacaagaattcacaattcattacttcaattacgagaaagggagtgagaagtacgtaatatggggtctgactgctggcatcctgatacatgctgcttcagttgtattccagcggccaccagactttcctgcacgaacagtgcaattcaacttgccgaagtactcaaaggagtgttcttcaatgccatga
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| Protein seq | MSTDLTIPPSMEAPGADIQALIQRLRLHRPRPSPYAAAAAPSPDAAAPPAELLFRPRRAAVLICLFRGAARELRVLLTKRSSKLSSHSGEVSLPGGKAEEGDADDAATALREAKEEIGLDPASVTVVASLEHFLSKHLLVVVPVVGILSDIQAFKPVLNVDEVDSIFDVPLEMFLKDEKRTSEEREWMGQEFTIHYFNYEKGSEKYVIWGLTAGILIHAASVVFQRPPDFPARTVQFNLPKYSKECSSMP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0375900 | RBH | 0.605025 | 1.278123 | 4.804197 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g28840 | RBH | 0.391065 | 0.780018 | 1.263908 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0375900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0014190 | RBH | 0.316004 | 0.000000 | 1.620236 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0014090 | SBH | 0.049145 | 1.509297 | 1.357535 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0014080 | RBH | 1.156425 | 6.342405 | 5.540045 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0014310 | SBH | 0.0 | 0.167608 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0014090 | RBH | 5.897633 | 0.0 | 5.804615 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0278800 | RBH | 1.910243 | 3.8707085 | 3.993994 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0014140 | RBH | 0.130300 | 0.312544 | 0.659697 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0301500 | RBH | 1.4867865 | 2.3781795 | 4.2404055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0013680 | RBH | 0.0 | 0.119933 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013710 | RBH | 0.557980 | 1.498215 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013600 | RBH | 4.846620 | 9.913263 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0014390 | RBH | 0.000000 | 0.000000 | 0.255066 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0013750 | RBH | 0.483878 | 6.217499 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013740 | RBH | 0.190589 | 1.368190 | 1.641415 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0013930 | RBH | 0.173638 | 2.284445 | 2.853243 |
