Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0012850 | OGI:04027670 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:16666586-16668716 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaatccgctagaaaatatcttcgattactccctggattagcacggatcagatcccgtgatttctgtttgcaaggtttgcattcccttttataaacttgactatcacggcttctgcacaagtgcccaacacagacccaactcatcccatggatgagattgcccaaacatctaccgccaaagcgactaattccgaagaacatgttccagctccgtccgttaataccacgtcggagcaccgtgaggaggtatgtgaactcccccgaagagtttcgtgtgtcggagccaccaccgccttccccagacccattcctgctgtcgccctcgatggaagcagatgacacgatgttcgctgaagattttgggtacatgtcaactccatgcccatctccaccatcggacattgatgacctcaacccacctgattcggacgtcgaggatgttgtcaagatacagaaccgaacctgtaaaaaaaaagtatcatgatggagaataaaaaaaattcatgacggaagtataaacctaggtttgtatgcataaaatgaataaaattgttagaaacagaagtaaaatagatgaaattaatggaatagcttaccaccaaaaatacaacacaagatgtgattgacgatgtgggcttttgtcgccaacatctgatggtatcgctcagtgcttggaacactgccttcgaccaatcgatggcagcgacccgatcgaggtcagtggcaacccatacatcactcttgggtatgtaaaagtcggttgttgggagtaggagcttggacataagaaccatgactaagaaacgaactgccgaggggtcgtctttctggttcttgatcacttcaatcagcattttagctgagatccgaccattccgtgcaattcccaattcttgtgtgatcctgtcgtgcacgcttcgcacaaccttgttaggtgggattacaatatcatgtccgcctaatggggtccccatcacaagcttcacggtgcgaggggtgatctgaatcttccgttcaccatcaatggaaggacacattgtgtcggggttggtcttcttgagactttcaagtgtcatgcaagccacggcgtctagcccgatttcccccaatttctcgtggtgtgtattggacagcacatgacaagcctccgacgctaacgtggcgctgcaacgtgtcaggttgggcccctttgattcgggtggctgcaaacaaaaatatagacctattgaaattaagcatgaataataaaaatccAaaaaaaatggtgctagtatatcaatgccaacactagaaataaaaataaaaggatgtgattttttatctgatatgttcactggaaagacgaggctataaatggcagtgttatgaagtgtttgcaaaaaaaagaaaaaaaagaatacacacaagatggtgtgcataacactgacatgtatgaaaataaaaattaaacggcatatgacaaacacataaatcaatttgcctattgttatgtatactgaaaaggaaaaattgtgaatatagtatattactcgcatacatgcgagacagaactgaaaacaaaagaatcgtatacttgcaaccaaaaagatggaccaatcctcattctagtcggcacgagcccgcgggtgggtcgtgggaatcaaacgaaaaccgaaatatactgcataacacattatagtAaaaaaaaaaagaagctattgatgcataaaggatatcgctaatttgactgaaaaataacaacacatacccatgcgcttgactgatcaaattaaaggtaagtcaattgcagagcgctgtagatagatacacctagggtatccgaaattgtgacacaaagaagagtaaaaagaaataacttataatcgcgtatgatggatttgtgcacgcaaactacacacaccctgctctcccctgttgcggtatggatccccaacatgagtaaatttgtatcaattaacatatgcccaaaatagtcactggaaaaaaaggtagcaaaagattgactgagttttgtactaacctcatcgcctgatgcgtcttcatcggccgacttagcccgccgcttcctttttggcttcctatgtgctgcttcatctccagccattgatgaagaagttgcgccgctgaccat
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| CDS seq | atggtcagcggcgcaacttcttcatcaatggctggagatgaagcagcacataggaagccaaaaaggaagcggcgggctaagtcggccgatgaagacgcatcaggcgatgagccacccgaatcaaaggggcccaacctgacacgttgcagcgccacgttagcgtcggaggcttgtcatgtgctgtccaatacacaccacgagaaattgggggaaatcgggctagacgccgtggcttgcatgacacttgaaagtctcaagaagaccaaccccgacacaatgtgtccttccattgatggtgaacggaagattcagatcacccctcgcaccgtgaagcttgtgatggggaccccattaggcggacatgatattgtaatcccacctaacaaggttgtgcgaagcgtgcacgacaggatcacacaagaattgggaattgcacggaatggtcggatctcagctaaaatgctgattgaagtgatcaagaaccagaaagacgacccctcggcagttcgtttcttagtcatggttcttatgtccaagctcctactcccaacaaccgacttttacatacccaagagtgatgtatgggttgccactgacctcgatcgggtcgctgccatcgattggtcgaaggcagtgttccaagcactgagcgataccatcagatgttggcgacaaaagcccacatcgtcaatcacatcttgtgttgtatttttggtggttcggttctgtatcttgacaacatcctcgacgtccgaatcaggtgggttgaggtcatcaatgtccgatggtggagatgggcatggagttgacatgtacccaaaatcttcagcgaacatcgtgtcatctgcttccatcgagggcgacagcaggaatgggtctggggaaggcggtggtggctccgacacacgaaactcttcgggggagttcacatacctcctcacggtgctccgacgtggtattaacggacggagctggaacatgttcttcggaattagtcgctttggcggtagatgtttgggcaatctcatccatgggatgagttgggtctgtgttgggcacttgtgcagaagccgtgatagtcaagtttataaaagggaatgcaaaccttgcaaacagaaatcacgggatctgatccgtgctaatccagggagtaatcgaagatattttctagcggattag
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| Protein seq | MVSGATSSSMAGDEAAHRKPKRKRRAKSADEDASGDEPPESKGPNLTRCSATLASEACHVLSNTHHEKLGEIGLDAVACMTLESLKKTNPDTMCPSIDGERKIQITPRTVKLVMGTPLGGHDIVIPPNKVVRSVHDRITQELGIARNGRISAKMLIEVIKNQKDDPSAVRFLVMVLMSKLLLPTTDFYIPKSDVWVATDLDRVAAIDWSKAVFQALSDTIRCWRQKPTSSITSCVVFLVVRFCILTTSSTSESGGLRSSMSDGGDGHGVDMYPKSSANIVSSASIEGDSRNGSGEGGGGSDTRNSSGEFTYLLTVLRRGINGRSWNMFFGISRFGGRCLGNLIHGMSWVCVGHLCRSRDSQVYKRECKPCKQKSRDLIRANPGSNRRYFLAD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0012850 | OsLima_08g0012850.01 | Chr08 | 16666586 | 16668716 | - | NAM | ||
| CDS seq | atggtcagcggcgcaacttcttcatcaatggctggagatgaagcagcacataggaagccaaaaaggaagcggcgggctaagtcggccgatgaagacgcatcaggcgatgagccacccgaatcaaaggggcccaacctgacacgttgcagcgccacgttagcgtcggaggcttgtcatgtgctgtccaatacacaccacgagaaattgggggaaatcgggctagacgccgtggcttgcatgacacttgaaagtctcaagaagaccaaccccgacacaatgtgtccttccattgatggtgaacggaagattcagatcacccctcgcaccgtgaagcttgtgatggggaccccattaggcggacatgatattgtaatcccacctaacaaggttgtgcgaagcgtgcacgacaggatcacacaagaattgggaattgcacggaatggtcggatctcagctaaaatgctgattgaagtgatcaagaaccagaaagacgacccctcggcagttcgtttcttagtcatggttcttatgtccaagctcctactcccaacaaccgacttttacatacccaagagtgatgtatgggttgccactgacctcgatcgggtcgctgccatcgattggtcgaaggcagtgttccaagcactgagcgataccatcagatgttggcgacaaaagcccacatcgtcaatcacatcttgtgttgtatttttggtggttcggttctgtatcttgacaacatcctcgacgtccgaatcaggtgggttgaggtcatcaatgtccgatggtggagatgggcatggagttgacatgtacccaaaatcttcagcgaacatcgtgtcatctgcttccatcgagggcgacagcaggaatgggtctggggaaggcggtggtggctccgacacacgaaactcttcgggggagttcacatacctcctcacggtgctccgacgtggtattaacggacggagctggaacatgttcttcggaattagtcgctttggcggtagatgtttgggcaatctcatccatgggatgagttgggtctgtgttgggcacttgtgcagaagccgtgatagtcaagtttataaaagggaatgcaaaccttgcaaacagaaatcacgggatctgatccgtgctaatccagggagtaatcgaagatattttctagcggattag
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| Protein seq | MVSGATSSSMAGDEAAHRKPKRKRRAKSADEDASGDEPPESKGPNLTRCSATLASEACHVLSNTHHEKLGEIGLDAVACMTLESLKKTNPDTMCPSIDGERKIQITPRTVKLVMGTPLGGHDIVIPPNKVVRSVHDRITQELGIARNGRISAKMLIEVIKNQKDDPSAVRFLVMVLMSKLLLPTTDFYIPKSDVWVATDLDRVAAIDWSKAVFQALSDTIRCWRQKPTSSITSCVVFLVVRFCILTTSSTSESGGLRSSMSDGGDGHGVDMYPKSSANIVSSASIEGDSRNGSGEGGGGSDTRNSSGEFTYLLTVLRRGINGRSWNMFFGISRFGGRCLGNLIHGMSWVCVGHLCRSRDSQVYKRECKPCKQKSRDLIRANPGSNRRYFLAD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0361300 | RBH | 0.0 | 0.0 | 0.400213 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g27250 | RBH | 0.0 | 0.0 | 0.130285 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0361300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013350 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013230 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013560 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004990 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0127500 | RBH | 0 | 0 | 0.0136335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0010050 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0134300 | RBH | 0 | 0 | 0.0067405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0009830 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005190 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004940 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0016850 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005090 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G010130 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0010100 | SBH | 0.0 | 0.0 | 0.0 |
