Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_08g0013560 | OGI:04027670 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr08:17338064-17340369 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATCCCATGGATGAGATTGCCCAAACATCTACCGCCAAAGCGACTAATTCCGAAGAACATGTTCCAGCTCCGTCCGTTAATACCACGTCGGAGCACCGTGAGGAGGTATGTGAACTCCCCCGAAGAGTTTCGTGTGTCGGAGCCACCACCGCCTTCCCAGACCCATTCCTGCTGTCGCCCTCGATGGAAGCAGATGACACGATGTTCGCTGAAGATTTTGGGTACATGTCAACTCCATGCCCATCTCCACCATCGGACATTGATGACCTCAACCCACCTGATTCGGACGTCGAGGATGTTGTCAAGATACAGAACCGAACCTGTACAAAAAAAAGTATCATGATGGAGAATAAAAAAAATTCATGACGGAAGTATAAACCTAGGTTTGTATGCATAAAATGAATAAAATTGTTAGAAACAGAAGTAAAATAGATGAAATTAACGGAATAGCTTACCACCAAAAATACAACACAAGATGTGATTGACGATGTGGGCTTTTGTCGCCAACATCTGATGGTATCGCTCAGTGCTTGGAACACTGCCTTCGACCAATCGATGGCAGCGACCCGATCGAGGTCAGTGGCAACCCATACATCACTCTTGGGTATGTAAAAGTCGGTTGTTGGGAGTAGGAGCTTGGACATAAGAACCATGACTAAGAAACGAACTGCCGAGGGGTCGTCTTTCTGGTTCTTGATCACTTCAATCAGCATTTTAGCTGAGATCCGACCATTCCGTGCAATTCCCAATTCTTGTGTGATCCTGTCGTGCACGCTTCGCACAACCTTGTTAGGTGGGATTACAATATCATGTCCGCCTAATGGGGTCCCCATCACAAGCTTCACGGTGCGAGGGGTGATCTGAATCTTCCGTTCACCATCAATGGAAGGACACATTGTGTCGGGGTTGGTCTTCTTGAGACTTTCAAGTGTCATGCAAGCCACGGCGTCTAGCCCGATTTCCCCCAATTTCTCGTGGTGTGTATTGGACAGCACATGACAAGCCTCCGACGCTAACGTGGCGCTGCAACGTGTCAGGTTGGGCCCCTTTGATTCGGGTGGCTGCAAACAAAAATATAGACCTATTGAAATTAAGCATGAATAATAAAAATCCAAAAAAAATGGTGCTAGTATATCAATGCCAACACTAGAAATAAAAATAAAAGGATGTGATTTTTTATCTGATATGTTCACTGGAAAGACGAGGCTATAAATGGCAGTGTTATGAAGTGTTTGCAAAAAAAAGAAAAAAAAGAATACACACAAGATGGTGTGCATAACACTGACATGTATGAAAATAAAAATTAAACGGCATATGACAAACACATAAATCAATTTGCCTATTGTTATGTATACTGAAAAGGAAAAATTGTGAATATAGTATATTACTCGCATACATGCGAGACAGAACTGAAAACAAAAGAATCGTATACTTGCAACCAAAAAGATGGACCAATCCTCATTCTAGTCGGCACGAGCCCGCGGGTGGGTCGTGGGAATCAAACGAAAACCGAAATATACTGCATAACACATTATAGTAAAAAAAAAAAGAAGCTATTGATGAATAAAGGATATCGCTAATTTGACTGAAAAATAACAACACATACCCATGCGCTTGACTGATCAAATTAAAGGTAAGTCAATTGCAGAGCGCTGTAGATAGATACACCTAGGGTATCCGAAATTGTGACACAAAGAAGAGTAAAAAGAAATAACTTATAATCGCGTATGATGGATTTGTGCACGCAAACTACACACACCCTGCTCTCCCCTGTTGCGGTATGGATCCCCAACATGAGTAAATTTGTATCAATTAACATATGCCCAAAATAGTCACTGGAAAAAAAGGTAGCAAAAGATTGACTGAGTTTTGTACTAACCTCATCGCCTGATGCGTCTTCATCGGCCGACTTAGCCCGCCGCTTCCTTTTTGGCTTCCTATGTGCTGCTTCATCTCCAGCCATTGATGAAGAAGTTGCGCCGCTGACCATGGCCTGTGGAACACAACTTCACACGCGGTTTGCGAATCGGCGAACCGAATCCTCTTCACCCTTCCTAAAGGGAGCGACGATACATTAGGAAGAATCCCTAGATTGCGGTCGATTTGGGATGGGGAAACGAAACCAGCATCCATAACACAACGGATAAAAATCGGGGGATATCACATTTACCTGTGGCCGACTTGTGGAAGAAAATCAGTGGGAATCAATCCCGGCGGCGCCGGCGATCTCCGGGGCAGAGGCGGCGAGAGAGGAGGGAGAGTTCTTCTTGGTCGACGGAGAAGAAAGAACTAGCCGTAAAATGTG
More
|
||||||||||
| CDS seq | ATGGTCAGCGGCGCAACTTCTTCATCAATGGCTGGAGATGAAGCAGCACATAGGAAGCCAAAAAGGAAGCGGCGGGCTAAGTCGGCCGATGAAGACGCATCAGGCGATGAGCCACCCGAATCAAAGGGGCCCAACCTGACACGTTGCAGCGCCACGTTAGCGTCGGAGGCTTGTCATGTGCTGTCCAATACACACCACGAGAAATTGGGGGAAATCGGGCTAGACGCCGTGGCTTGCATGACACTTGAAAGTCTCAAGAAGACCAACCCCGACACAATGTGTCCTTCCATTGATGGTGAACGGAAGATTCAGATCACCCCTCGCACCGTGAAGCTTGTGATGGGGACCCCATTAGGCGGACATGATATTGTAATCCCACCTAACAAGGTTGTGCGAAGCGTGCACGACAGGATCACACAAGAATTGGGAATTGCACGGAATGGTCGGATCTCAGCTAAAATGCTGATTGAAGTGATCAAGAACCAGAAAGACGACCCCTCGGCAGTTCGTTTCTTAGTCATGGTTCTTATGTCCAAGCTCCTACTCCCAACAACCGACTTTTACATACCCAAGAGTGATGTATGGGTTGCCACTGACCTCGATCGGGTCGCTGCCATCGATTGGTCGAAGGCAGTGTTCCAAGCACTGAGCGATACCATCAGATGTTGGCGACAAAAGCCCACATCGTCAATCACATCTTGTGTTGTATTTTTGGTGGTTCGGTTCTGTATCTTGACAACATCCTCGACGTCCGAATCAGGTGGGTTGAGGTCATCAATGTCCGATGGTGGAGATGGGCATGGAGTTGACATGTACCCAAAATCTTCAGCGAACATCGTGTCATCTGCTTCCATCGAGGGCGACAGCAGGAATGGGTCTGGGAAGGCGGTGGTGGCTCCGACACACGAAACTCTTCGGGGGAGTTCACATACCTCCTCACGGTGCTCCGACGTGGTATTAACGGACGGAGCTGGAACATGTTCTTCGGAATTAGTCGCTTTGGCGGTAGATGTTTGGGCAATCTCATCCATGGGATGA
More
|
||||||||||
| Protein seq | MVSGATSSSMAGDEAAHRKPKRKRRAKSADEDASGDEPPESKGPNLTRCSATLASEACHVLSNTHHEKLGEIGLDAVACMTLESLKKTNPDTMCPSIDGERKIQITPRTVKLVMGTPLGGHDIVIPPNKVVRSVHDRITQELGIARNGRISAKMLIEVIKNQKDDPSAVRFLVMVLMSKLLLPTTDFYIPKSDVWVATDLDRVAAIDWSKAVFQALSDTIRCWRQKPTSSITSCVVFLVVRFCILTTSSTSESGGLRSSMSDGGDGHGVDMYPKSSANIVSSASIEGDSRNGSGKAVVAPTHETLRGSSHTSSRCSDVVLTDGAGTCSSELVALAVDVWAISSMG |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_08g0013560 | OsARC_08g0013560.01 | Chr08 | 17338064 | 17340369 | - | NAM | ||
| CDS seq | ATGGTCAGCGGCGCAACTTCTTCATCAATGGCTGGAGATGAAGCAGCACATAGGAAGCCAAAAAGGAAGCGGCGGGCTAAGTCGGCCGATGAAGACGCATCAGGCGATGAGCCACCCGAATCAAAGGGGCCCAACCTGACACGTTGCAGCGCCACGTTAGCGTCGGAGGCTTGTCATGTGCTGTCCAATACACACCACGAGAAATTGGGGGAAATCGGGCTAGACGCCGTGGCTTGCATGACACTTGAAAGTCTCAAGAAGACCAACCCCGACACAATGTGTCCTTCCATTGATGGTGAACGGAAGATTCAGATCACCCCTCGCACCGTGAAGCTTGTGATGGGGACCCCATTAGGCGGACATGATATTGTAATCCCACCTAACAAGGTTGTGCGAAGCGTGCACGACAGGATCACACAAGAATTGGGAATTGCACGGAATGGTCGGATCTCAGCTAAAATGCTGATTGAAGTGATCAAGAACCAGAAAGACGACCCCTCGGCAGTTCGTTTCTTAGTCATGGTTCTTATGTCCAAGCTCCTACTCCCAACAACCGACTTTTACATACCCAAGAGTGATGTATGGGTTGCCACTGACCTCGATCGGGTCGCTGCCATCGATTGGTCGAAGGCAGTGTTCCAAGCACTGAGCGATACCATCAGATGTTGGCGACAAAAGCCCACATCGTCAATCACATCTTGTGTTGTATTTTTGGTGGTTCGGTTCTGTATCTTGACAACATCCTCGACGTCCGAATCAGGTGGGTTGAGGTCATCAATGTCCGATGGTGGAGATGGGCATGGAGTTGACATGTACCCAAAATCTTCAGCGAACATCGTGTCATCTGCTTCCATCGAGGGCGACAGCAGGAATGGGTCTGGGAAGGCGGTGGTGGCTCCGACACACGAAACTCTTCGGGGGAGTTCACATACCTCCTCACGGTGCTCCGACGTGGTATTAACGGACGGAGCTGGAACATGTTCTTCGGAATTAGTCGCTTTGGCGGTAGATGTTTGGGCAATCTCATCCATGGGATGA
More
|
|||||||
| Protein seq | MVSGATSSSMAGDEAAHRKPKRKRRAKSADEDASGDEPPESKGPNLTRCSATLASEACHVLSNTHHEKLGEIGLDAVACMTLESLKKTNPDTMCPSIDGERKIQITPRTVKLVMGTPLGGHDIVIPPNKVVRSVHDRITQELGIARNGRISAKMLIEVIKNQKDDPSAVRFLVMVLMSKLLLPTTDFYIPKSDVWVATDLDRVAAIDWSKAVFQALSDTIRCWRQKPTSSITSCVVFLVVRFCILTTSSTSESGGLRSSMSDGGDGHGVDMYPKSSANIVSSASIEGDSRNGSGKAVVAPTHETLRGSSHTSSRCSDVVLTDGAGTCSSELVALAVDVWAISSMG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0361300 | RBH | 0.0 | 0.0 | 0.400213 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g27250 | RBH | 0.0 | 0.0 | 0.130285 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0361300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013350 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013230 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0010270 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0010020 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0010050 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0255500 | SBH | 0.1030345 | 0.038315 | 1.49299 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0012850 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0009790 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0010220 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0009830 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0010320 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G010130 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0010100 | SBH | 0.0 | 0.0 | 0.0 |
