Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0008580 | OGI:08027770 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:9199212-9205427 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caatccaatttctcatgccatctcagattcaaaccaacacaactcgacaaacatccaatacaacacaaaatttacagcacagttaacagccaaatctagtgacattccaaatacaatcacagtaaccaaaatttcaccggatgtcgcatgaccaagatcttccaagtgagcttagcagcactgcatatgcgctagataaaacatcaataactgccatatcatcctagtttcttctactgttcaagcagttaatagatgaataaaaaatattcatgcagttactgatgtcacggacatgctgcaatgtcaggatcgggaggagctgtctccctcggcatgttatctccacctgcgcatcgcacatttctgaaattttcagttcatctcagttcagcattttgtaacaaagaaactaagcatgctcagagatcaggcaaaacgatatatatatactttcttctaaaagttgaattggatggtttctgaattctgatgagattaacaaacaaaccttcaatttgattacaagtcaagaattatgttactgtgaggtgatgtgaggtgaggaatgcaaaaaatgcaaattgcttctggtggagagttagacagtgatagatgtgaaggactttctccttttcggcaacaacaaacaacatatattgcagatcttcagagcagtacactgctgctgtggctgtgtctaaatgccacctataaagttatactagaactttagaactttaggcgcgcttcgcggcgccctaccgtttgttattggtaaatagtatcacaagtcaaaacatgtacttatattggtaagtgttgagttcgtaagaaccttcattctagcacaagctgttacataacttgaattccaatgttacatgatgatctgaaattgacccttaatactgcaagataaaaaatcacctaataagtttagaaaccacaacaatttatcatacccaaaagagcaataaaagttataataatgtattaaaaaatggtttaatcattcatcctcttccaaaagaggctaattcagttccattacagggcatgaatcacaagttgtaatgggaagtactatgtttgcaatcacttaagaaaataaatattcttcaatcgtacaggggggactcttagaatttgtatgcactaggtttctgaTttttgttgcttgcaaaattaagttgctcgcaatcctggaagctgagtagacatttactggtgtgtgtgcacgcgcgttcaatgtgacatggagattattacagacagcacactgtggatatggtaaatccctttttaccccttttcactgtggaaataatggttttcacgcatgagggagaggcaccctcaaatttccttactaaagtaacagttacaggtgtaaaaaacaaccctatttcctgtcctgctaccaaataaatagcccagttctttcgtgaactctgaaaagacactgaaatgcttttgcacttgcacagtggaaaaattggtaaacaaaacgaactgccagccctggtttcttcctgttatcccttaatttaaaaggaaaagactgacatcatgctcacaaatttccaaagattgggtataaactgagacatcttaaactgcaatgcaactgcttagcatagtataacatgagaaagcacagccacaagtttgctagataggcaaaaaaaccacttcacatgttaggaagaaacatgcccctacagttttgacattcctgagcaccacatatggtggcaaccaatcctttttacatgaataagataaaaggagtcatcagatttgacattcataataggatttcacttattactttctaaaaaaaggtgaccatgggactcataggaactcaccaaaagtgaccatgggaaggatgaaagttgaagcaaactcagcaattcgcacaggaaaatcagcctcatttcaatttggagcacatacaaaacctctacacaacacaacaatacatctctagttacatctgtagcccatctaccgcagcaagaacagcaacaatcacgagggggaaggaagattagggaagcgagtagggtgaatataccttgatgcagatgttctctgttgactgatagtttgctattactgtttgttaaaaggaaaaggaaagatggctagtcctgtttttgtagaatatttttgcagcatgcacatgtttaattgctaattacaaattgcagtacataaaaaagtggtaatcttttatttcaggtggatatgatccagatatatatggactattggagattagtacttttgatttcatcttactgttaacatttatatatttcatattttctgaaagtacgttgaagtagagtttaccattcgatatataggaattgtgaaaactgctcaagtgatggataaataaaacactacataatgcaagtctcttgttcAaaagatcatgtcttacagctatatgatattatattggtttctcattctgcttgcaggtcagatgataattcattgaggttgattgccatagattgataattctacaggttaggagtagtacttataacgtatagatgcaattcagtttcaacagtcatgaagtgttgatgaattatgaagagctcaagcaatacatctctagttgcatctgtagcccatctaccgcagcaagaacagcaacaatcacgaGggggaaggaagattagggaagcgagtagggtggattgggggaaggaagattagggaagcgagtggggtggatataccttgatgtacatgttctcggcagccttctcctcctcgccgagcaccttgccgccggaggagaggagccgccgcggtgcgagccacgccgccagcctcgcctgaactcccttgcattgactcccttgcctgaaccccctcgcattgactccctcccgctgtcgtaccaggtcgccgccacctccaccgaccccatccacgccggcctgcctccgcggcttccgccaccgcctcgctgccggcctggccgacgggccctcCGcctctggcgcgccgctgtccttcgcctctgcgacggcgccgccagatccgccggagcaggctgttgccgtgctcgccgcccgccgccgagagccgagctccttcctagggcggcggatccggctagggtttggatatatgtaaaagaagctattttgatgcgattttaccagaataaccctggtatctggaaacctattatacaagttacttggacaaaatggtcatttaacctggaaatttcaaaaTtttgaaacttcgaatcgaattttatcatactaaatgaacttatgtgaaaaagttgttaaaaacaaagttgtataacttattgagatctaccaattttattttggttatttctccatctgagtttcattggcctatataaaattttaatttcaaattatgacaacattaaacaatattttcaaaaactaaatgatttcaactcaaaaagtcatcaataacaaagttatataactcatcaatatctataacttttattttaatcatttcttcatccgacgaagtgatttgtaacattattctcaaaatctacatatctctcttattgtttataaacgtataagagatatgtacattttgtgaacaatgttacaaatcacttcgtcgaatgaagaaatgacccaaataaaagttatatatcttgatgagttatacaacattgttgttgatgactttttcagttgaaatcatctagtacttgtaaatgatgtttgaagctgtcataatttgaaatttaaattcaaactgtctaaacaaagtcgtatagaaaaatagccaaaacaaaagttatagatattgatgagtaatacaactttgttgttgatgactttttcagttgaaatcatctagtacttgtaaatattgtttgaagctgtcataatttgaaattcaaattcaaactgtttaaacaaagtcatatagaaaaatggccaaaaaaaagttgtatatattggtgagttatacaactttgtttttgatgaccttttcagttaaaatcatttattatttaaaaatgttatttgaagttgtcataatttaaaattcaaattgtatatgggtcaatcaaactcagatggagaaataaccaaaataaaatatgaagatctcaataagttatacaactttgtttttgacaacttttttacataagctcatttagtatgataaaattcgattggaaggtttaatattttgaaattaattgaaggagggacgcaaaatagacttcttggcttcggaggagcaaaaggcctgttactggccagcccttttgctcatcccttgccgagaagtccattttacctccctcctttcatttaaattcaaaatattaaaccttcgaaattttagcatactaaatgaatatatgtgaaaaagttgtcaaaaataaagttgtataacttattgcgatctaccaattttattttggctatttctccatctgagtttaattgacctatataaaatttgaatttcaaattatgacaaatttcaaacaacattttcaaatactaaataatttcaactgaaaaagtcatCAAcaacaaagttgtataaataataaatatatacaacttttgttttggtcattttgctatatgactctgtttcaataatttgaatttgaatatcaaattatgacaacttcaaacaatatttacaaatactaaatgatttcaactgaaaagttcatcaacatcaaagttgtataactcatcaagatctataacttttatttaggtcatttcttcatccgacaaaacgatttataacattgttcacaaaatgtacatatctcttatatagtttataaactataagatagatatgctaattttataaacaatgttactatccctttaccgaatgaagaaataaccaaaataaaagttatagatattgatgagttatacaaatttgatgttgatgactttttcagttgaaatcatttagtatttgaaaatgttgtttgaagttgtcataatttgaaattcaaattcaaactgtttaaacaaagtcatatagaaaaatggccaaaacaaaagttgtagatattgatgtgttatacaactttgttgctgatgaccttttcagttgaaatcatttagtatttaaaaatgttatttgaagttgtcataatttgaaatttaaattttatataggtcaatcaaactcatatggagaaataaccaaaataaaataggttgatctcaataagttatacaactttgtttttgacaacttttccatataagttcatttagtatgataaaattcgattcaaaggtttaatattttaaaattaatggaaaggagggaggcaaaatggacttcttggcttcggaggagcaaaatgggctggccaataacaggccttgtttcattccttctctgtttaaccttttttttcttcttttattataccattgtgaagtaccacacaaaagtcatactaaatgaactcgtatgaaaaagttttaaaaaacaaagttgtagaactcatttagatctaccatttttcttttggtcatttctccatttgagtttgattgtactatataaaatttgaatttcaaattatgacaaattcaaataacatttttaaatactaaatgatttcaactgaaaaagtcatcaacaacaaagtaatataaatcattaatatctacaacttttgttttggtcattttgctatatgactctgtttcaataatttgaatttgaatttaaaattataacaatttcaaataacatttacaagtactaaatgatttcaactgaaaaagtcatcaacaacaaagttgtataaatcatcaatatctacaacttttgttttggtcattttggtatatgactctgtttcaataatttgaatttgaatttcaaattatgacaactgcaaacaacatttttaaatactaaattatttcacctgaaaaagtcatcaacatcaaagttgtataactcatcaatatctataacttttattttggtcatttcttcatccgataaagtgatagtaacattgtttacaaaatttgcatatctcttatatggttttcaagtatttaaatcgcgacgaaattgctataacgccataggttttgggctggtttatcacgaaattgataaactgtcatggattatgggccttgtatccat
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| CDS seq | aggaaggagctcggctctcggcggcgggcggcgagcacggcaacagcctgctccggcggatctggcggcgccgtcgcagaggcgaaggacagcggcgcgccagaggCGgagggcccgtcggccaggccggcagcgaggcggtggcggaagccgcggaggcaggccggcgtggatggggtcggtggaggtggcggcgacctggtacgacagcgggagggagtcaatgcgagggggttcaggcaagggagtcaatgcaagggagttcaggcgaggctggcggcgtggctcgcaccgcggcggctcctctcctccggcggcaaggtgctcggcgaggaggagaaggctgccgagaacatgtacatcaaggtggagataacatgccgagggagacagctcctcccgatcctgacattgcagcatgtccgtgacatcagtaactgcatgaatattttttattcatctattaactgcttgaacagtagaaga
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| Protein seq | RKELGSRRRAASTATACSGGSGGAVAEAKDSGAPEAEGPSARPAARRWRKPRRQAGVDGVGGGGGDLVRQREGVNARGFRQGSQCKGVQARLAAWLAPRRLLSSGGKVLGEEEKAAENMYIKVEITCRGRQLLPILTLQHVRDISNCMNIFYSSINCLNSRR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0008580 | OsLima_08g0008580.01 | Chr08 | 9200117 | 9205427 | - | NAM | ||
| CDS seq | atggatacaaggcccataatccatgacacctgctccggcggatctggcggcgccgtcgcagaggcgaaggacagcggcgcgccagaggCGgagggcccgtcggccaggccggcagcgaggcggtggcggaagccgcggaggcaggccggcgtggatggggtcggtggaggtggcggcgacctggtacgacagcgggagggagtcaatgcgagggggttcaggcaagggagtcaatgcaagggagttcaggcgaggctggcggcgtggctcgcaccgcggcggctcctctcctccggcggcaaggtgctcggcgaggaggagaaggctgccgagaacatgtacatcaagtattaa
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| Protein seq | MDTRPIIHDTCSGGSGGAVAEAKDSGAPEAEGPSARPAARRWRKPRRQAGVDGVGGGGGDLVRQREGVNARGFRQGSQCKGVQARLAAWLAPRRLLSSGGKVLGEEEKAAENMYIKY |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0008580 | OsLima_08g0008580.02 | Chr08 | 9199212 | 9202347 | - | IsoSeq | ||
| CDS seq | aggaaggagctcggctctcggcggcgggcggcgagcacggcaacagcctgctccggcggatctggcggcgccgtcgcagaggcgaaggacagcggcgcgccagaggCGgagggcccgtcggccaggccggcagcgaggcggtggcggaagccgcggaggcaggccggcgtggatggggtcggtggaggtggcggcgacctggtacgacagcgggagggagtcaatgcgagggggttcaggcaagggagtcaatgcaagggagttcaggcgaggctggcggcgtggctcgcaccgcggcggctcctctcctccggcggcaaggtgctcggcgaggaggagaaggctgccgagaacatgtacatcaaggtggagataacatgccgagggagacagctcctcccgatcctgacattgcagcatgtccgtgacatcagtaactgcatgaatattttttattcatctattaactgcttgaacagtagaaga
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| Protein seq | RKELGSRRRAASTATACSGGSGGAVAEAKDSGAPEAEGPSARPAARRWRKPRRQAGVDGVGGGGGDLVRQREGVNARGFRQGSQCKGVQARLAAWLAPRRLLSSGGKVLGEEEKAAENMYIKVEITCRGRQLLPILTLQHVRDISNCMNIFYSSINCLNSRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AL | Chr08 | 9199212 | 9201980 | - | OsLima_08g0008580.02 | OsLima_08g0008580.01,OsLima_08g0008580.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.009361 | 0.263181 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0559000 | SBH | 5.499534 | 6.387712 | 6.185874 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0559000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0009010 | RBH | 0.516940 | 0.000000 | 2.574315 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0009060 | RBH | 0.0 | 0.0 | 1.054948 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0025120 | SBH | 1.215780 | 5.107542 | 5.842059 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0009030 | RBH | 0.142248 | 0.310218 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008970 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0185500 | RBH | 7.9152015 | 6.4921375 | 11.705655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0009050 | RBH | 0.436637 | 0.757534 | 1.420534 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0008770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0008610 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0009320 | RBH | 0.0 | 0.094419 | 0.278390 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0008750 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G024840 | SBH | 0.659316 | 5.166067 | 4.094604 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0008790 | RBH | 0.0 | 5.253487 | 0.000000 |
