Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0559000 | OGI:08079540 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:27968346-27970710 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAGCCATTCATATAGATCATTCATTGATTCATTCCATTCATATATATCTCTCATCAGATAATAATGTTGCTATGACAAAAAGGGCACAATCTTCTACTCCGTACAGATCAAAAAGATCACCCTCCAAAAAAGGCAGTTATACCTCACCCAGCAACTGAGTTCAAACGGCACAAAAATTTCTTGCCTATCATGAGATTGCATATGGTAGAAACTACGCGAAAACTAACATTTGTCTGGTGTTACTTACATCCCCCGAAATAGTCACATGGTTTTCCTCAGTTTAGTTCCAAAAGGTAGTGCAGGTGCATAAGGTGAGTAAAAGAAAGGAGAAACTGGACAGGAACTCTATCAGCAAGGCCCAAGTTAGTTCGCAACCTCTTCTGACTTCTCAGGCTTTGACAGGCGATACCACGCTATGGCACTGGCACCTAGAACACCAACAGCACCTGCGATGAGAGTGTAGTTCTTGTTCTTGACGGTCGACGCACCAGCAGTTGGGCCACCTTCGGCCTTCACATCAGCGGCAGGAGTAGATGAGCCTTGCTCTCCTGGGCTGGGACCCTGCAAGCATTTAGTATCTTGTAAGTTGCAACAACCAAATGATTAAAAGGTTCACAAATTCACAACCCACATAACAAGAAAACACAGCAAATTCATGGCCTGTAAACTCTACAGAATTTGGTAAAAGCAAGGCATGGCATAAACAAATTGCCTCTTCTCAGAGCAAGGGCAGATATTGAATGAAACTGGTATAAAAGTATAACACTATGATCAAAGTTTTGCAGGGCAAACTGATCTGTAGTTTTAAGCTGGGAATAAAATGGAAAGTAGTTATGAGAAACAGATATGCATGACTGCATACTTTTAAGTGGGGCAAAGATAATGTGCTTCACATACCTGGCGTGCAAGCTTCTCCAGCTTCTCTTGTTCCATTTTCTGCAGTACAGTGAAGAACATTCAGATATATTACACCCACAAGAGTATCAAGTGCCATTAACAGAATATGCCAAAGCAACCAGAAATCCTACAGAACTTAGGGAATAAGCAAACATACGATTCACCACTCATGCTAAGTGATTATGATGATCAACATCTCCTAATACGATGAAATTGCATCATAACAAACAGATAATGATATCAGATCCACCCCACATCATGTTGCAGCAAACTGGCATAGGGTTCTGAACCAACTATAAGCACATGCAGAAAGGAAGACAACACATAGCTAGCTAGGAGGTTAACCACACATGGTAACATAACTAGATTAAAATCCATAGTTTATTTTTCCTAAATTACCACCATCAATTGCACTAATTATGAAAGAAGATGGTTCAAGAAAAACATGAACTAGAAATTTCTTGAACAGCACTGCTAAAACTACAAACAACAATAGGCTAATTTCACGAGGAACATGCCACTAATTTGAACAGCACAGAAAGAAAAACAAAACCAAGAAAGATCAAGCGCAATTTCACGAGGAACATATTACTAATCTGAACAGCAATGAAAGAAAAACTAGACAAACTATCCCTCATGACTAGTACGCAAGCACATCTGACATTATCACACGCTGGCATAATTTTCTGAACCGCAAATACTCACATACCACCACACAAAGAAATATTACACATACCCACAGAGAAGAAAAGGTAACCATATGTCTAGATTAATCATCAAGTTTCAGAATTTCCCTAAACAACACCATTACACCAACAGGTGCACAAACAGCACAAGGATGAACAGATGAAAGTTGAAGCAAACTCAGCAGTTCGTACAGGAAAAACAGCCTCGTTTCAATTAGGAGCACATCCATTTCCCTGAACCATACCGCTCAACAAAATCATGCGCACCCACAATACTAGCAAAAAATCCTACGGTTCACGCGTCCCATCAGCCAAAATCCCTGAAGCGACGGAGCAAGAAGCGAACAGAAATCGACCCCCACCGCAACCGCAACACACACACACACCACTTGGACTTGGCACCATAAACCTCTATACAGCACACCAATACATCTCTAGTTGCATCTAGAGCACATCTACCGCGGCAAGAACAGCAAGAATCACGAGGGGAAGGAAGATTAGGGAAGAGAGTGGGGATGGATATACCTTGATGTAGATGTTCTCGGCAGCCTTCTCCTCGCCGAGCACCTTGCCGCCGGAGGAGAGGAGCCGCCGCGGTGCGAGCCTCGCCGCCAGCCTCGCCTGAACCCTGGAAGCCGCCGCCACCACCGCCATCGCCATCGAGCCGAGCGCCACGAGAAACCCTAGGAGACGCTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTCTGCTCTGCTTCTACCTGCTCTCCTCCCACTCTCTCGCTTTTCTTCTTCTTGC
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| CDS seq | ATGGCGATGGCGGTGGTGGCGGCGGCTTCCAGGGTTCAGGCGAGGCTGGCGGCGAGGCTCGCACCGCGGCGGCTCCTCTCCTCCGGCGGCAAGGTGCTCGGCGAGGAGAAGGCTGCCGAGAACATCTACATCAAGAAAATGGAACAAGAGAAGCTGGAGAAGCTTGCACGCCAGGGTCCCAGCCCAGGAGAGCAAGGCTCATCTACTCCTGCCGCTGATGTGAAGGCCGAAGGTGGCCCAACTGCTGGTGCGTCGACCGTCAAGAACAAGAACTACACTCTCATCGCAGGTGCTGTTGGTGTTCTAGGTGCCAGTGCCATAGCGTGGTATCGCCTGTCAAAGCCTGAGAAGTCAGAAGAGGTTGCGAACTAA |
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| Protein seq | MAMAVVAAASRVQARLAARLAPRRLLSSGGKVLGEEKAAENIYIKKMEQEKLEKLARQGPSPGEQGSSTPAADVKAEGGPTAGASTVKNKNYTLIAGAVGVLGASAIAWYRLSKPEKSEEVAN |
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| Function | Uncharacterized protein At2g27730, mitochondrial [UniProtKB/Swiss-Prot:Q9ZUX4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0559000 | OsNip_08t0559000-01 | Chr08 | 27968346 | 27970710 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGATGGCGGTGGTGGCGGCGGCTTCCAGGGTTCAGGCGAGGCTGGCGGCGAGGCTCGCACCGCGGCGGCTCCTCTCCTCCGGCGGCAAGGTGCTCGGCGAGGAGAAGGCTGCCGAGAACATCTACATCAAGAAAATGGAACAAGAGAAGCTGGAGAAGCTTGCACGCCAGGGTCCCAGCCCAGGAGAGCAAGGCTCATCTACTCCTGCCGCTGATGTGAAGGCCGAAGGTGGCCCAACTGCTGGTGCGTCGACCGTCAAGAACAAGAACTACACTCTCATCGCAGGTGCTGTTGGTGTTCTAGGTGCCAGTGCCATAGCGTGGTATCGCCTGTCAAAGCCTGAGAAGTCAGAAGAGGTTGCGAACTAA
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| Protein seq | MAMAVVAAASRVQARLAARLAPRRLLSSGGKVLGEEKAAENIYIKKMEQEKLEKLARQGPSPGEQGSSTPAADVKAEGGPTAGASTVKNKNYTLIAGAVGVLGASAIAWYRLSKPEKSEEVAN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.499534 | 6.387712 | 6.185874 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0568900 | RBH | 1.743599 | 1.358081 | 23.440907 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g44470 | RBH | 3.659293 | 4.227213 | 1.566770 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0559000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0025360 | RBH | 0.817923 | 13.724039 | 2.963586 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0025120 | RBH | 0.212474 | 4.363044 | 1.949750 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0025120 | RBH | 1.215780 | 5.107542 | 5.842059 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0025370 | RBH | 0.237912 | 0.173139 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0025140 | RBH | 9.568374 | 3.955442 | 5.447220 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0445900 | RBH | 7.4881195 | 12.988992 | 4.133036 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0024920 | RBH | 0.395877 | 0.388373 | 0.372357 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0464900 | RBH | 6.829555 | 8.7014535 | 10.250991 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0024340 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0024690 | RBH | 0.621134 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0024490 | RBH | 0.0 | 7.350704 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0025400 | RBH | 0.468016 | 0.465106 | 0.788551 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0024680 | RBH | 0.325193 | 8.100998 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G024840 | RBH | 0.659316 | 5.166067 | 4.094604 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0025000 | RBH | 0.000000 | 22.333626 | 6.971269 |
