Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0008070 | OGI:08025640 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:8343892-8347517 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atactcttgctaacaagtgttatcaccatattgcaacctctcaacctccttcctctgccatggaaaccatgctctctcttctcacacatgccctcctcttgcaaacagtcacctctcagaccatcaatggagatgatctctcagcactcttgtcattcaaatccctcataagggatgacccaagagaggtgatgtcatcttgggacaccgctggcaatgctacaaacatgccagcacctgtcatctgccaatggactggtgTttcctgcaacaatcgccggcatccaggtcgcgtaaccactctccgtctgagtggcgctggcctagtcggcaccatctCccctcagctcggcaacctgacccacctccgtgtccttgatctgtcagccaacagcctcgatggtgatatcccagctagccttggtggttgtcgaaagcttcgtacattgaacttgagcacgaaccacctgtcaggttcaatccctgatgatcttggtcagtcatcaaagcttgccattttcgatgtcggccacaacaatcttactggtaatgttcccaagtcattctccaacctcacaacacttatgaagtttatcatagagacgaacttcattgatggcaaagatttgagttggatgggtaacctcacatcattgacacacttcgttcttgaagggaaccgtttcactggtaacatccctgaatcttttggtaaaatggctaatcttatttactttaatgtcaaagataatcagttggaaggtcatgttcctctaccgatcttcaatatttcttccAttagattcttggatcttggtttcaacagactgtcaggatcacttccactcgatattggttttaagcttcccaggataaaaatttttagcactattgctaaccattttgagggcataataccaccgaccttctcaaacgcatctgctctcgaatccttgcaacttcgtggaaacaaatatcacggcatgattcctagggaaattggcatccatggtaacctgaagttctttgcgttaggagacaatgtgctccaagccacacggcctagtgatttggaattttttacatcattgaccaattgtagcagcttgcaaatgctagatgttggccagaacaaccttgttggtgcaatgccaattaacattgcaaacctgagcagagagctctcatggattgacctaagtggcaaccaattaattgggaccatacctgcagatttgtggaagtttaaacttacatctctcaacctgtcatataatctcttcacaggaactttacctcatgatattggctggcttacaagaatcaattctatctatgtatcacataatagaatcactgggcagattccacaatcattaggcaatgcctcacagttgagctctctcactttgtcaaataattttctggatggcagcattccatcaagccttggcaatctcacaaaacttcaatacttggatctttccggtaacgccttgatgggccaaatcccacaagaaatacttacaataccttcccttaccaaacttctcagcctctccaacaatgctctaagtggctctattccaagacagattgggctcttgaacagccttgtcaaaatggatctctcaatgaataagctatctggtgaaatcccaaaagctattggcagctgtgtccaattgagtttcctaaatttcaaaggaaatcttctccagggacaaataccagaaaatctgaacaatttgaggagccttgaaatccttgatctctctaacaacaacttggcaggtcccatacctgaatttctagcgaatttcacgcttctaactaatctAaacctctccttcaacgcactgtcaggtcctgttccaaatacagggattttttgtaatggcactatagtgtcactctcaggtaatacaatgctatgtggcggccctccagatttgcaattcccttcatgcccatctaaagattcagaccaggcttcagtgcatcgactacatgtcttaatcttttgcattgttggaactttgattttctctttgttttgtatgactgcatactgcttcattaagacaaggatgaaaccgaatatcattgataatgAaaacctatttctttatgagacgaatGAgaggatatcttatgccgaactacaagcagcaaccgagtcattctcaccggcaaatttgattggttctggaagctttggcaatgtttacattggaaatttgattattgatcagaatctagtacctattgcagtcaaggttcttaaccttagccaacgaggagccagtagaagtttcttgactgagtgtgatgctcttaggagaattcgacatcggaaacttgtcaaggtgatcaccatatgcagtggatcagaccaaaatggtgatgagttcaaggcgcttgtcctagaattcatttgtaatggaagtttagatgagtggctgcatgcaagcacggcagcaattagcacaagctacagaaggctAaatctgatgaaaaggctgcatattgctcttgatgtggcagaggcattggaatatcttcaccatcatattgtgccgcctatagttcactgtgatattaaaccaagcaacattcttttagacgatgacatggtggcgcatgttacggactttggtctagcaaagataatcaatattgctgaaccgtgcaaagaaagcagctcatttgtaattaaaggaacaattggatatgttgcaccaggtaagtggatattattcaactcaactatgtcaggatctcaatagttatttccgttctatatattttactagtttaacaaaatgatacgatagtattttaatgtgacctagcgatgcaaaaacaaaatgtaatattgatgttatatttgactgaaaattgtagtgcgagatccaccttttatcccatactcactatgtatccactaaaacttttttatgatttatatatgtttgcagaatatggctcaggatctccggtctctatggatggggacatatatagctatggggtgttgttgttggaaatgtttactggaagaagaccaactgacaattttatcaatggtatggcaagtcttatcgattatgtcaagacagcctatcctaacaatctattggaaatAttggacactaatgcaacctacaatggaaacacccaagatatgacacaactagttgtttatcctatatttcgacttggtctagcatgctgcaaggaatcaccaagggaaagaatgaagatggataatgtagtcaaggaattgaatgctataaagaaggcattctcagctcatacatatgcctgataatgaatttcgagcaacgaagtaatctaggtaagcaatgaatgtaactagatttggttgtctgcttgagaagttgttacttactgaagcatactttgtttgtTTCtgaagtccagaatattgtcagtacagtttattttcttctcttcttgtaatttttatccatttcatttttgtattttggaggtgttacccatggtttaaaagagtaaatattggTtttgcgccaatatttaacctagccccctggacttgcaatttggtttctcagacccctgaacctgctcccgtttgc
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| CDS seq | atggaaaccatgctctctcttctcacacatgccctcctcttgcaaacagtcacctctcagaccatcaatggagatgatctctcagcactcttgtcattcaaatccctcataagggatgacccaagagaggtgatgtcatcttgggacaccgctggcaatgctacaaacatgccagcacctgtcatctgccaatggactggtgTttcctgcaacaatcgccggcatccaggtcgcgtaaccactctccgtctgagtggcgctggcctagtcggcaccatctCccctcagctcggcaacctgacccacctccgtgtccttgatctgtcagccaacagcctcgatggtgatatcccagctagccttggtggttgtcgaaagcttcgtacattgaacttgagcacgaaccacctgtcaggttcaatccctgatgatcttggtcagtcatcaaagcttgccattttcgatgtcggccacaacaatcttactggtaatgttcccaagtcattctccaacctcacaacacttatgaagtttatcatagagacgaacttcattgatggcaaagatttgagttggatgggtaacctcacatcattgacacacttcgttcttgaagggaaccgtttcactggtaacatccctgaatcttttggtaaaatggctaatcttatttactttaatgtcaaagataatcagttggaaggtcatgttcctctaccgatcttcaatatttcttccAttagattcttggatcttggtttcaacagactgtcaggatcacttccactcgatattggttttaagcttcccaggataaaaatttttagcactattgctaaccattttgagggcataataccaccgaccttctcaaacgcatctgctctcgaatccttgcaacttcgtggaaacaaatatcacggcatgattcctagggaaattggcatccatggtaacctgaagttctttgcgttaggagacaatgtgctccaagccacacggcctagtgatttggaattttttacatcattgaccaattgtagcagcttgcaaatgctagatgttggccagaacaaccttgttggtgcaatgccaattaacattgcaaacctgagcagagagctctcatggattgacctaagtggcaaccaattaattgggaccatacctgcagatttgtggaagtttaaacttacatctctcaacctgtcatataatctcttcacaggaactttacctcatgatattggctggcttacaagaatcaattctatctatgtatcacataatagaatcactgggcagattccacaatcattaggcaatgcctcacagttgagctctctcactttgtcaaataattttctggatggcagcattccatcaagccttggcaatctcacaaaacttcaatacttggatctttccggtaacgccttgatgggccaaatcccacaagaaatacttacaataccttcccttaccaaacttctcagcctctccaacaatgctctaagtggctctattccaagacagattgggctcttgaacagccttgtcaaaatggatctctcaatgaataagctatctggtgaaatcccaaaagctattggcagctgtgtccaattgagtttcctaaatttcaaaggaaatcttctccagggacaaataccagaaaatctgaacaatttgaggagccttgaaatccttgatctctctaacaacaacttggcaggtcccatacctgaatttctagcgaatttcacgcttctaactaatctAaacctctccttcaacgcactgtcaggtcctgttccaaatacagggattttttgtaatggcactatagtgtcactctcaggtaatacaatgctatgtggcggccctccagatttgcaattcccttcatgcccatctaaagattcagaccaggcttcagtgcatcgactacatgtcttaatcttttgcattgttggaactttgattttctctttgttttgtatgactgcatactgcttcattaagacaaggatgaaaccgaatatcattgataatgAaaacctatttctttatgagacgaatGAgaggatatcttatgccgaactacaagcagcaaccgagtcattctcaccggcaaatttgattggttctggaagctttggcaatgtttacattggaaatttgattattgatcagaatctagtacctattgcagtcaaggttcttaaccttagccaacgaggagccagtagaagtttcttgactgagtgtgatgctcttaggagaattcgacatcggaaacttgtcaaggtgatcaccatatgcagtggatcagaccaaaatggtgatgagttcaaggcgcttgtcctagaattcatttgtaatggaagtttagatgagtggctgcatgcaagcacggcagcaattagcacaagctacagaaggctAaatctgatgaaaaggctgcatattgctcttgatgtggcagaggcattggaatatcttcaccatcatattgtgccgcctatagttcactgtgatattaaaccaagcaacattcttttagacgatgacatggtggcgcatgttacggactttggtctagcaaagataatcaatattgctgaaccgtgcaaagaaagcagctcatttgtaattaaaggaacaattggatatgttgcaccagaatatggctcaggatctccggtctctatggatggggacatatatagctatggggtgttgttgttggaaatgtttactggaagaagaccaactgacaattttatcaatggtatggcaagtcttatcgattatgtcaagacagcctatcctaacaatctattggaaatAttggacactaatgcaacctacaatggaaacacccaagatatgacacaactagttgtttatcctatatttcgacttggtctagcatgctgcaaggaatcaccaagggaaagaatgaagatggataatgtagtcaaggaattgaatgctataaagaaggcattctcagctcatacatatgcctga
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| Protein seq | METMLSLLTHALLLQTVTSQTINGDDLSALLSFKSLIRDDPREVMSSWDTAGNATNMPAPVICQWTGVSCNNRRHPGRVTTLRLSGAGLVGTISPQLGNLTHLRVLDLSANSLDGDIPASLGGCRKLRTLNLSTNHLSGSIPDDLGQSSKLAIFDVGHNNLTGNVPKSFSNLTTLMKFIIETNFIDGKDLSWMGNLTSLTHFVLEGNRFTGNIPESFGKMANLIYFNVKDNQLEGHVPLPIFNISSIRFLDLGFNRLSGSLPLDIGFKLPRIKIFSTIANHFEGIIPPTFSNASALESLQLRGNKYHGMIPREIGIHGNLKFFALGDNVLQATRPSDLEFFTSLTNCSSLQMLDVGQNNLVGAMPINIANLSRELSWIDLSGNQLIGTIPADLWKFKLTSLNLSYNLFTGTLPHDIGWLTRINSIYVSHNRITGQIPQSLGNASQLSSLTLSNNFLDGSIPSSLGNLTKLQYLDLSGNALMGQIPQEILTIPSLTKLLSLSNNALSGSIPRQIGLLNSLVKMDLSMNKLSGEIPKAIGSCVQLSFLNFKGNLLQGQIPENLNNLRSLEILDLSNNNLAGPIPEFLANFTLLTNLNLSFNALSGPVPNTGIFCNGTIVSLSGNTMLCGGPPDLQFPSCPSKDSDQASVHRLHVLIFCIVGTLIFSLFCMTAYCFIKTRMKPNIIDNENLFLYETNERISYAELQAATESFSPANLIGSGSFGNVYIGNLIIDQNLVPIAVKVLNLSQRGASRSFLTECDALRRIRHRKLVKVITICSGSDQNGDEFKALVLEFICNGSLDEWLHASTAAISTSYRRLNLMKRLHIALDVAEALEYLHHHIVPPIVHCDIKPSNILLDDDMVAHVTDFGLAKIINIAEPCKESSSFVIKGTIGYVAPEYGSGSPVSMDGDIYSYGVLLLEMFTGRRPTDNFINGMASLIDYVKTAYPNNLLEILDTNATYNGNTQDMTQLVVYPIFRLGLACCKESPRERMKMDNVVKELNAIKKAFSAHTYA |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0008070 | OsLima_08g0008070.01 | Chr08 | 8343892 | 8347517 | + | NAM | ||
| CDS seq | atggaaaccatgctctctcttctcacacatgccctcctcttgcaaacagtcacctctcagaccatcaatggagatgatctctcagcactcttgtcattcaaatccctcataagggatgacccaagagaggtgatgtcatcttgggacaccgctggcaatgctacaaacatgccagcacctgtcatctgccaatggactggtgTttcctgcaacaatcgccggcatccaggtcgcgtaaccactctccgtctgagtggcgctggcctagtcggcaccatctCccctcagctcggcaacctgacccacctccgtgtccttgatctgtcagccaacagcctcgatggtgatatcccagctagccttggtggttgtcgaaagcttcgtacattgaacttgagcacgaaccacctgtcaggttcaatccctgatgatcttggtcagtcatcaaagcttgccattttcgatgtcggccacaacaatcttactggtaatgttcccaagtcattctccaacctcacaacacttatgaagtttatcatagagacgaacttcattgatggcaaagatttgagttggatgggtaacctcacatcattgacacacttcgttcttgaagggaaccgtttcactggtaacatccctgaatcttttggtaaaatggctaatcttatttactttaatgtcaaagataatcagttggaaggtcatgttcctctaccgatcttcaatatttcttccAttagattcttggatcttggtttcaacagactgtcaggatcacttccactcgatattggttttaagcttcccaggataaaaatttttagcactattgctaaccattttgagggcataataccaccgaccttctcaaacgcatctgctctcgaatccttgcaacttcgtggaaacaaatatcacggcatgattcctagggaaattggcatccatggtaacctgaagttctttgcgttaggagacaatgtgctccaagccacacggcctagtgatttggaattttttacatcattgaccaattgtagcagcttgcaaatgctagatgttggccagaacaaccttgttggtgcaatgccaattaacattgcaaacctgagcagagagctctcatggattgacctaagtggcaaccaattaattgggaccatacctgcagatttgtggaagtttaaacttacatctctcaacctgtcatataatctcttcacaggaactttacctcatgatattggctggcttacaagaatcaattctatctatgtatcacataatagaatcactgggcagattccacaatcattaggcaatgcctcacagttgagctctctcactttgtcaaataattttctggatggcagcattccatcaagccttggcaatctcacaaaacttcaatacttggatctttccggtaacgccttgatgggccaaatcccacaagaaatacttacaataccttcccttaccaaacttctcagcctctccaacaatgctctaagtggctctattccaagacagattgggctcttgaacagccttgtcaaaatggatctctcaatgaataagctatctggtgaaatcccaaaagctattggcagctgtgtccaattgagtttcctaaatttcaaaggaaatcttctccagggacaaataccagaaaatctgaacaatttgaggagccttgaaatccttgatctctctaacaacaacttggcaggtcccatacctgaatttctagcgaatttcacgcttctaactaatctAaacctctccttcaacgcactgtcaggtcctgttccaaatacagggattttttgtaatggcactatagtgtcactctcaggtaatacaatgctatgtggcggccctccagatttgcaattcccttcatgcccatctaaagattcagaccaggcttcagtgcatcgactacatgtcttaatcttttgcattgttggaactttgattttctctttgttttgtatgactgcatactgcttcattaagacaaggatgaaaccgaatatcattgataatgAaaacctatttctttatgagacgaatGAgaggatatcttatgccgaactacaagcagcaaccgagtcattctcaccggcaaatttgattggttctggaagctttggcaatgtttacattggaaatttgattattgatcagaatctagtacctattgcagtcaaggttcttaaccttagccaacgaggagccagtagaagtttcttgactgagtgtgatgctcttaggagaattcgacatcggaaacttgtcaaggtgatcaccatatgcagtggatcagaccaaaatggtgatgagttcaaggcgcttgtcctagaattcatttgtaatggaagtttagatgagtggctgcatgcaagcacggcagcaattagcacaagctacagaaggctAaatctgatgaaaaggctgcatattgctcttgatgtggcagaggcattggaatatcttcaccatcatattgtgccgcctatagttcactgtgatattaaaccaagcaacattcttttagacgatgacatggtggcgcatgttacggactttggtctagcaaagataatcaatattgctgaaccgtgcaaagaaagcagctcatttgtaattaaaggaacaattggatatgttgcaccagaatatggctcaggatctccggtctctatggatggggacatatatagctatggggtgttgttgttggaaatgtttactggaagaagaccaactgacaattttatcaatggtatggcaagtcttatcgattatgtcaagacagcctatcctaacaatctattggaaatAttggacactaatgcaacctacaatggaaacacccaagatatgacacaactagttgtttatcctatatttcgacttggtctagcatgctgcaaggaatcaccaagggaaagaatgaagatggataatgtagtcaaggaattgaatgctataaagaaggcattctcagctcatacatatgcctga
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| Protein seq | METMLSLLTHALLLQTVTSQTINGDDLSALLSFKSLIRDDPREVMSSWDTAGNATNMPAPVICQWTGVSCNNRRHPGRVTTLRLSGAGLVGTISPQLGNLTHLRVLDLSANSLDGDIPASLGGCRKLRTLNLSTNHLSGSIPDDLGQSSKLAIFDVGHNNLTGNVPKSFSNLTTLMKFIIETNFIDGKDLSWMGNLTSLTHFVLEGNRFTGNIPESFGKMANLIYFNVKDNQLEGHVPLPIFNISSIRFLDLGFNRLSGSLPLDIGFKLPRIKIFSTIANHFEGIIPPTFSNASALESLQLRGNKYHGMIPREIGIHGNLKFFALGDNVLQATRPSDLEFFTSLTNCSSLQMLDVGQNNLVGAMPINIANLSRELSWIDLSGNQLIGTIPADLWKFKLTSLNLSYNLFTGTLPHDIGWLTRINSIYVSHNRITGQIPQSLGNASQLSSLTLSNNFLDGSIPSSLGNLTKLQYLDLSGNALMGQIPQEILTIPSLTKLLSLSNNALSGSIPRQIGLLNSLVKMDLSMNKLSGEIPKAIGSCVQLSFLNFKGNLLQGQIPENLNNLRSLEILDLSNNNLAGPIPEFLANFTLLTNLNLSFNALSGPVPNTGIFCNGTIVSLSGNTMLCGGPPDLQFPSCPSKDSDQASVHRLHVLIFCIVGTLIFSLFCMTAYCFIKTRMKPNIIDNENLFLYETNERISYAELQAATESFSPANLIGSGSFGNVYIGNLIIDQNLVPIAVKVLNLSQRGASRSFLTECDALRRIRHRKLVKVITICSGSDQNGDEFKALVLEFICNGSLDEWLHASTAAISTSYRRLNLMKRLHIALDVAEALEYLHHHIVPPIVHCDIKPSNILLDDDMVAHVTDFGLAKIINIAEPCKESSSFVIKGTIGYVAPEYGSGSPVSMDGDIYSYGVLLLEMFTGRRPTDNFINGMASLIDYVKTAYPNNLLEILDTNATYNGNTQDMTQLVVYPIFRLGLACCKESPRERMKMDNVVKELNAIKKAFSAHTYA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.023420 | 0.033675 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0248100 | SBH | 0.000000 | 0.0 | 0.297710 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g14990 | SBH | 0.000000 | 0.0 | 0.073969 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0248100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0008560 | SBH | 0.0 | 3.680730 | 0.560007 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0008570 | SBH | 0.616447 | 0.0 | 0.077008 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0008700 | SBH | 0.185113 | 0.953826 | 1.790319 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0008570 | SBH | 0.0 | 0.043443 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008490 | RBH | 0.232796 | 3.473220 | 3.019099 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0142600 | SBH | 0.6176465 | 4.5846425 | 0.0077845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0008520 | SBH | 0.029490 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0136300 | RBH | 0.895194 | 0.1415615 | 0.4255935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0008040 | RBH | 0.486234 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0008250 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0008100 | SBH | 0.0 | 10.238196 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0008820 | SBH | 0.046271 | 0.488347 | 0.271633 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0008250 | SBH | 0.0 | 1.022617 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G008510 | SBH | 0.0 | 0.787105 | 0.274423 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0008300 | SBH | 0.0 | 0.0 | 0.716900 |
