Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0007220 | OGI:08022600 | 9/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:7358135-7358344 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcggcggccccacggggtcacgaacctcgtcggccggatCGcggcggcagccgggggcgacacggaggtggtggccggagggctcgcgtacgagccagaggtatacgcgcccatgatggaggaggaggcgctctccttctccaccgcttggggcgtcagcgttctacttcgtgtttgtgtaatttttttcaaaaccgtgaccaattag |
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| CDS seq | atgcggcggccccacggggtcacgaacctcgtcggccggatCGcggcggcagccgggggcgacacggaggtggtggccggagggctcgcgtacgagccagaggtatacgcgcccatgatggaggaggaggcgctctccttctccaccgcttggggcgtcagcgttctacttcgtgtttgtgtaatttttttcaaaaccgtgaccaattag |
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| Protein seq | MRRPHGVTNLVGRIAAAAGGDTEVVAGGLAYEPEVYAPMMEEEALSFSTAWGVSVLLRVCVIFFKTVTN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0007220 | OsLima_08g0007220.01 | Chr08 | 7358135 | 7358344 | + | NAM | ||
| CDS seq | atgcggcggccccacggggtcacgaacctcgtcggccggatCGcggcggcagccgggggcgacacggaggtggtggccggagggctcgcgtacgagccagaggtatacgcgcccatgatggaggaggaggcgctctccttctccaccgcttggggcgtcagcgttctacttcgtgtttgtgtaatttttttcaaaaccgtgaccaattag
More
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| Protein seq | MRRPHGVTNLVGRIAAAAGGDTEVVAGGLAYEPEVYAPMMEEEALSFSTAWGVSVLLRVCVIFFKTVTN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0230000 | SBH | 3.180440 | 3.345842 | 4.012487 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g13320 | SBH | 1.815243 | 2.427368 | 1.047515 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0230000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007630 | SBH | 1.383591 | 21.803036 | 5.902777 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007700 | SBH | 1.021707 | 4.716218 | 2.972835 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007780 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0007780 | SBH | 0.479242 | 0.495357 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007630 | SBH | 2.336572 | 0.0 | 1.864061 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0127800 | RBH | 0 | 0.0366745 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007560 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0120300 | SBH | 7.3362455 | 16.9567155 | 11.6278655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0007300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0007160 | SBH | 15.284668 | 41.329132 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0007830 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0007250 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007570 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007380 | RBH | 0.0 | 0.0 | 0.0 |
