Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_08g0007780 | OGI:08022650 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr08:8575755-8580471 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCTCCGCGGCATCTGACATCTCTCCTCCCCCGTCCCTATCCCCTTCGCCCTTCGTCGTCGTCGTCGTCGTCGTTCGTCCCAATCTCCGCATCCCTCCATTCCCCCCTCCTCCTCGATGGCTCGCCTCCTCGCGCAAACCCTAACCCTAACCCTAGCCCGCCCGGCTGCGGCGGCGGCGGCGCCCCTCCTCCCTCTCCGCGGCCTCGCCACCAAGGTCGAGGTCATCGAGATCGACCTCGCCGAGGACGACGACTCCTCCGCCTCCACCTCGGGCCCCGCCTCCTCCCCCGCGTCGGTGGAGGTGGTCGGGGTCAGGCGCCTGGAGGAGGCGATCCACGGCGTCATGGTGCGCCGCGCGGCGCCCGACTGGCTCCCCTTCGTCCCCGGGGGCTCGTTCTGGGTTCCCCCCATGCGGCGGCCCCACGGGGTCGCGGACCTCGTCGGCCGGATCGCGGCGGCGGCGTCCGGGGCCGACGCGGAGGTGGTGGCCGGAGGGCTCGCGTACGAGCCGGAGGTGTACGCGCCCATGACGGAGGAGGAGGCGCTCTCCTTCTCCACCGCGCGGGGCTGGCCGTCGGCCTCCTACTTCGTCGAAGGTGAGCCGCTGGCCTCGGCTGGCCGAGATCTTGGATTCCCAGCTCGGGTTATGCAGAATTAATTGATTTTTGTTTTGTGGATTCGAATCAAGAACATTATTAGCGCACCACATCCGTTTCTGTGTTTGGTATTCATTGTGGACCATCATTTTTTAAGCTACACCTATTGAACTGGATTACATTATTTAGCTACAACTATTGAGCTGAATTCTTAGACCAAATTGCAATGTTGTAGTATGCCAATCTATACAATTCAGATAACTATGCTCTAGTAACTACAACCTGTGTCCAGGTGCATACCTAGAAACAGCTACATTTCTGGGACGGGTAGAACGATATCTTGCTACAAGAATTTTTAGAAGCAGTTTTAAAATTCTGTTAGGTTTGTTACCTGTATGTTGTTTCGAGTTTCTACAATACAAAAGAGTAAGGGCATTCAGCATTGGCACATTCTTTAGTCATGTGCCATCATGCCTGTTCTATTTGTCCAATTTATCCATTGCCTACCTCGGTACTTTTCTGGACGGAGGTAGTAATATCTTGCTACAATAATTTTTAGAAGCAATTTTTAATTTCTGTTAGGTTTGTTACCTGTCTGTTGTTTTGAGTCTCTACAATACAAAAGAGTAAGGGCATTCAACACTGGCACATTCTTCATCATGTGCCATGGTGCCTGTTCTGTTCGATTTATCCATTGCCTACCTCGGTGCTTTTGTACTTGCATGTGCAGTTACTCTCTTGTGACTCACGACACCATATTATACTATTTGTATGGACTCTTTGATATGTTATTCTAGGTTTGATGGCTTGCACTTATTAAAATCACCCTTTAAATCACAATTAAATACCCTAGACATGGATATTTGTAATTCTCTTTTGGAGATCTCTCTTATTTTATCACCAACTCATTTGCATGTGCGCCCTAAATTACTAGGTAATCTAGGGATATATCATGCAAATATTGTGTGGCAGGGGGGAAATATGAAGCTAAATTTGATATCCATATAGCACTTGTGCAAATGATACACTATAGATCTTTATTCGCTTGCACATGAAAGATGAATTGTGATGGCATGTCTTGAAACAGTGTTGGCAAACAATGTTCCTCTTTTGTTAATTACTCTGTTTTGCACTTTTAGGTCTTTGTAGTTCCATCATCTAGAAAATATAGCACAAAAATCTATATGGTGATTTAAAAACTAAGAATTGAACTTATAGTAAGGTGCAGACGTGCAGTAGTTCATAGGCAAACATTAAACCATTGTAGTTGATTTGTTTACTTCAGGACATTACTTGTGTATTCCGTACAAAACATGAATTGGTAAATTGTGTTAGTAATGGCTGTAGAGTTTACATTGTACCCTTGCAGTGTCTATGCCATGTGGTCTATATTACATTCTTCCCTTCCAGTGTCTATACCATTTGGTCTATATAGATTCTTCAGAAGTACATCACCTTCTATTATATATTCTAGGCATGAATATTTATCTTGTTGATTTTTTTTCTCAAGGCATTATTCTATTATATATTCCTGACCCTGTGTGCCAACACTGATCAACACAACATATCAGTTTCACTGAACAAATAGTATATAGAGTTGACATATCTTTCTCCCCAATAATTTGTTATGTTTTTTCCCTGTTGTTCCATGTGCATGCATTTCAAAACCTTGTTGAAGATTATTATTCTTGGCCATTTTTATTTGAGATTTAGCTTAATTTGTCACCTGACTAATTAATTATTTTCAAAGGGAAATTCCCACATACCAAGAAGAAGTCAAGGAAACGTGCAACCCGCACTGATGAGGAAGAAAGCTGATTGGCTAATGCTCCATTGCCAAGGGGAAGGTGATTTCTTTTTCTAGGAATTGCTTTATGTAAGTGTGGTGTTTATACTTATAACAATCAAAATCACTAATCAGTGGTCATACAAGGCTTAGCCTCTACAAGGGCCTCCCTGTGGCTCTGATAAGTGTGAGGGTACATGAGCACTGTCCAATGCACCTGGACAGGGAAGTTAATGATGAAATTGTCAGCAATGGCCACATTTCCTTATCAATTTCCATTGGAGATTTCATACATGATCGTATTGGATGGCTACTTGTGTTTGAAAACAATGTGAAGTGGGTAAAGATAGTAACTTTGAGATCTTTTAAGCATAACATCAACTTTTCAACATACATGTCTATATATATCAGTACCAGTATGAGAACAGTTACTTTTACTGTGGAAGTTCATAATTGGAACTTGGAAGTAATAATAATTTGCAGTCATTAAAGAACCAACTTTCGCCAGGCATATATAGTGTAGGTTTCTACTAGGAGTGAAGGAAAACTTCAAAGCCATACTTTGATGTTTGCTACTAGGGCTCTTGGAATAAATAACATGCAGCATATGGAAAGGTTCCTGAGAACCTTTGTCCTTCAATGCACCTCTTACTACGTTATGCCGATGTACGTAGTGGCTAGTGTTATCCTGTTAGGTTATTGTAATATACCATAATGCAGGGTAATACAGATGGATATTGCAGTGCACCAGTCTGGTGGTGTTCACATTTAGCTGACAAAATAAAACACTGCTTGGATCAAACATTTGTTCCTTTTATCAAACCAGACGTAGATACAGAGAACATGATGCTGCTCTTTTAAAGGGCAAATGCAATGCTTAGGATATCCTAATTACTGGTTATTGGTCCCTGCACTGCTGCCCTCTTATGATGTTTTTTAACATTTTTATAGTTGCTACCTGTTAGCCAATGATATGGACTCATGTAATGCATATTTGTAATTTGTATTGCAGTATAAAATCAAAATATTTTGCAGGGTAACTATGACAATACCAATGTTTGAAAGTTTGGCGTGCCTCATGTTGCCGCATCATACAACAAGGATGGAGCAACTTAGGTTGCTCCTATTTGCATGGGCATGTGGTGGTAACCACCTTGTCAGAAACAATGTAAACAATAAACAGTGAGTTTCCAGGTTGACAAGGCCATGTTTTGGACAAGGCTGAAACTAGTTAGTTCTTGACTACTAAACAAAGTTTGAGGCAAGACTGGTGATTCTGATAGACTTGGGTCACTAGTTAGATTTCTCATTGATTTCCATAAACTCTTTACTTTCTCCTAAATCCTTGCAATTGGGCATATCCTGTAAAAATGAATTTGCACACATAAAACTTGTTTGAACATTCAGTCAGTAGTTCGTACCCAGCTCTTCAGTCCCGCTGGGATTTTATCTGAATCTATCATTGAGCTAAAAACTTGGGTCAATGGTTAAATTTGTCTTAAATTTTAAAAACTCTGGTGCCTTGTACAATTTTTGATTGCAGAGCCTGTAAAAATGTAGGCTACACGCAGACAGCCTTGTTTCCTCTGGGAATTCACCTGTTTGTTTGCTTGTGTCCTTACTATGTGCTCCAAAAACTATGATTCGGCTAAAAGAAATTCTTTTTCTGCAGGCTTCTACAAGAAAAGGTTGTTCAGGGTTACACGTCTCTGCTATGACCAATGTACATATGGATGACGGCAAGGACCCAAGTGCTAATTAATCACCCCACCCCTTGCACTATGAAGATAATCTGTTGCAACTGCTATGATTGGGTTGCAATCTGTATATTTCACTCAGAAGCTGTAGTGTTATTGTATCGACCAGCCCTTGTGCCATAGCCTTGGTTCACGGTAATAAAACATGGAGGGAGAAGCTGGATGCTTGTGTTTGTGTTCTGCAACAGCCATAGAAAATGGAACACTAGCTGGAATCCAACAAGGACTGTGGATGGCTCTTTGTGCCAAGAAAAAAAAAAGAATGTTTGCAAAGCGCTGAGATAAAAACATCTGCTTCCATCTCCAGTCTTGAATTTGTTTCCATATAAAACTGCATGTTGTAATGTCATATTTGACTTGTTGAGACCTAAAAGGTCAACTGTATGTGCATTTGGTGGACATGGCCTGCGAAGCAAATTTGATTACATTCTAAATTTATAGCTGGGAATGCCTCATCTATAAGAGAGAGCTGCTGTCAAGTGAGCATATGAATGTAACTGGTTGGTTGCTTCCTACGGCACTCACTATTTGATTATGTATGTGCGATTTGATATTAATGTTGGGTTTTAAGTGCTGG
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| CDS seq | ATGGCTCGCCTCCTCGCGCAAACCCTAACCCTAACCCTAGCCCGCCCGGCTGCGGCGGCGGCGGCGCCCCTCCTCCCTCTCCGCGGCCTCGCCACCAAGGTCGAGGTCATCGAGATCGACCTCGCCGAGGACGACGACTCCTCCGCCTCCACCTCGGGCCCCGCCTCCTCCCCCGCGTCGGTGGAGGTGGTCGGGGTCAGGCGCCTGGAGGAGGCGATCCACGGCGTCATGGTGCGCCGCGCGGCGCCCGACTGGCTCCCCTTCGTCCCCGGGGGCTCGTTCTGGGTTCCCCCCATGCGGCGGCCCCACGGGGTCGCGGACCTCGTCGGCCGGATCGCGGCGGCGGCGTCCGGGGCCGACGCGGAGGTGGTGGCCGGAGGGCTCGCGTACGAGCCGGAGGTGTACGCGCCCATGACGGAGGAGGAGGCGCTCTCCTTCTCCACCGCGCGGGGCTGGCCGTCGGCCTCCTACTTCGTCGAAGGGAAATTCCCACATACCAAGAAGAAGTCAAGGAAACGTGCAACCCGCACTGATGAGGAAGAAAGCTGA
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| Protein seq | MARLLAQTLTLTLARPAAAAAAPLLPLRGLATKVEVIEIDLAEDDDSSASTSGPASSPASVEVVGVRRLEEAIHGVMVRRAAPDWLPFVPGGSFWVPPMRRPHGVADLVGRIAAAASGADAEVVAGGLAYEPEVYAPMTEEEALSFSTARGWPSASYFVEGKFPHTKKKSRKRATRTDEEES |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_08g0007780 | OsARC_08g0007780.01 | Chr08 | 8575755 | 8580471 | + | NAM | ||
| CDS seq | ATGGCTCGCCTCCTCGCGCAAACCCTAACCCTAACCCTAGCCCGCCCGGCTGCGGCGGCGGCGGCGCCCCTCCTCCCTCTCCGCGGCCTCGCCACCAAGGTCGAGGTCATCGAGATCGACCTCGCCGAGGACGACGACTCCTCCGCCTCCACCTCGGGCCCCGCCTCCTCCCCCGCGTCGGTGGAGGTGGTCGGGGTCAGGCGCCTGGAGGAGGCGATCCACGGCGTCATGGTGCGCCGCGCGGCGCCCGACTGGCTCCCCTTCGTCCCCGGGGGCTCGTTCTGGGTTCCCCCCATGCGGCGGCCCCACGGGGTCGCGGACCTCGTCGGCCGGATCGCGGCGGCGGCGTCCGGGGCCGACGCGGAGGTGGTGGCCGGAGGGCTCGCGTACGAGCCGGAGGTGTACGCGCCCATGACGGAGGAGGAGGCGCTCTCCTTCTCCACCGCGCGGGGCTGGCCGTCGGCCTCCTACTTCGTCGAAGGGAAATTCCCACATACCAAGAAGAAGTCAAGGAAACGTGCAACCCGCACTGATGAGGAAGAAAGCTGA
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| Protein seq | MARLLAQTLTLTLARPAAAAAAPLLPLRGLATKVEVIEIDLAEDDDSSASTSGPASSPASVEVVGVRRLEEAIHGVMVRRAAPDWLPFVPGGSFWVPPMRRPHGVADLVGRIAAAASGADAEVVAGGLAYEPEVYAPMTEEEALSFSTARGWPSASYFVEGKFPHTKKKSRKRATRTDEEES |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.479242 | 0.495357 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0230000 | RBH | 3.180440 | 3.345842 | 4.012487 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g13320 | RBH | 1.815243 | 2.427368 | 1.047515 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0230000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007630 | RBH | 1.383591 | 21.803036 | 5.902777 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007700 | RBH | 1.021707 | 4.716218 | 2.972835 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007810 | RBH | 1.687029 | 7.398956 | 8.155875 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0026060 | RBH | 0.765992 | 0.166886 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007630 | RBH | 2.336572 | 0.0 | 1.864061 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0128100 | RBH | 8.672516 | 17.151374 | 32.2848285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007600 | RBH | 0.736318 | 1.164288 | 0.900402 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0120300 | RBH | 7.3362455 | 16.9567155 | 11.6278655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0007250 | RBH | 0.643275 | 0.094412 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0007330 | RBH | 0.879378 | 15.091717 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0007160 | RBH | 15.284668 | 41.329132 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0007860 | RBH | 1.390119 | 1.786819 | 2.666889 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0007280 | RBH | 0.904722 | 11.660245 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007600 | RBH | 0.717131 | 3.370310 | 2.670564 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007410 | RBH | 5.818632 | 15.887442 | 14.746535 |
