Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0006900 | OGI:08021230 | 11/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:6990611-6994050 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tgtctcgattcatcatcttctgatattggaaggggacggagtaagttgtcaaccaacaaggtaacgcatggatttcatctactggagggaagatctggccatgacatggaagactaccatgtggcagagtataagtatgcaaataatcatgaatttggtctgtttgctatttatgatggccatttgggagataaagtgcccagctatttgaaagccaacctttttaacaacatactgaaagaggtatctctgtaaaacgtgagatattgagaagcatcttatctttattccattatttgcttttttggggtatttattttgtaatatttttgttctgtttgcagcctctcttctggacgaaccctcaagaagcaattaaaaatgcatacagctctacaaacaagtatattctggaaaattctaaacaactaggaccgggtggttcaactgcagttacagctattgtagttgaaccgaaaaagaccatcgacagtcgtcgatgcgttggaacttctccgaagcgacgcccccaaggaggacacgacatgtaatgccgccaccgctcgtctgaaaatcggaacaaggctttcacctggagatttgtaggggatatgaaagaacgccatgacaacgcctccaagaagtgaaacggcgcccacgggcgccgtcgtcgtcgaaccggcccaaggcacggaaaggctttcgccagcatcttcacatcacccacacaagcacccccacatcaatgaccacagaatagtccatgacatcccacaagcagtcattccttgaccgtaaccaacggcaaagacgggcccttggccAccctcgaaacgccatcaatccgccacaaacttctacagcaagccggagcctccgccctccccctactgttccccacgaccaggatactactgttccccacgaccaggatagggtccggccaaagaaggggggaaaccgaaaggagggagaaacactcggccgacaatgaggaagtcaccaccgcggacgtcaagccccattcctgcttcgcgccagcacaagccatcgtcccgccaactccacatacgcacgtcaccacctcacgcagccgccccgctgaccggctgccctggctatccggcgtggaggcgacggatccaaccacggactagccatccagggcggtgcaagccggcgaccagccgggcggcggccacaagccagggcggcacaagccagcggtccacgccaccgcagccacccatcgtcgccgctaccaccgcgccaccacgacggacgctaacaccgacactgcgaagtgcgagcgagccgccgttgcccgccaaaccgcggcattgcccctccggcggcatccgcaccgccgcagcatccgccgtcggcccgacacgccgccgtggacggacgccgacaccgcaaccacggcgcgagcaagccgccactgccgtcgcccacccaccacgatgccgtccctgcctgccgccggtctccgcgccgtccagcaccggcgccgacctctcccccgccgccagccaccacctccgggcgccccgccagatccggccggagccggcctggatctggacggggaagctgccgccgccgcctcctctggaggttcccccggcctgcgagaagccccaccgccgccgtccttgcggctgcacggctttgccggcggccgctcgggcggctgcgaggtggaggaggaggtgagggagggctggtcgccgccgcgttcgtcgccctcgagctgccctgggtaggcgacgcgagggtcacgggccgagtctcagtatgcgacaggacgttcagcgaggccttcgccttcttgggtccacttccttcttgtggtgggcgacgcgctcttcggttgtttctgctaatgaagtcgaagctgctcgctgatggggtgctgcgacgctcggcaactatgacatgttgcagtcacttccaaggagtttctggtgctggccgtgtgaaggaagttgctcctcggtggtttggctgatgtccattgttggatgtcgaagctgcttttcgctttggcgacttcatggcttcagtgtcgctgcggttatggagtcggcgctgttaggtcgcttgggcggctagctcggcaacgataacacctcttctgcgatgtgggagctgtcgtgtagcttttgtgtttagtttggcggcgacgtcctacgtttgggctccgacgtcgttgttagttgtgtagtggtgggttttagccagttttcctataattaaccgtgcagctgtatggttttcgggcccggttttccttataaactgggtcaattttcttcttataaatataacagtggaacaaagttccgccttaggtttcaaaaaaaaaagctattgtagttgatggtacggatatgtggatagcaaatataggtgattcaagggctgttgtgtgtgaaagaggagccgctaaccaacttactgttgatcatgaaccccacacgacaaatgaacggaagaggattgaaaagcagggtggttttgtttctactttccttggtaaatgttttgttctgtcatcgttgtttctgaccacgacataaaatttcattgattcatttaccatttactcataggtgatgttcctcgagtaaatggccaacttgcggttgccagagcaTttggtgatcagagcctcaaggcatacttgagctcagaaccagatgttaaacatgtacctataaactcgagtgtagaatttgtcatacttgctagtgatggattatggaaggtatgtatttcccttgccaagttgctgcttcacttaagcttttatagattataatgcaaaattattgtattaccttgtattggaaactggatttccaatcgaattccattccctcatgttctttcttttggccaagtttatatttaccatttttttgtggaagataagaaaaatcaggataccttcctaggactgatgttacttactccgccacttagcttgatcgatgtgtcttttctataacttgttgagctgttcctgtagtcctttttttgttgcctggccctattcatgtagtttagttcttgacctcacatggtaaacggttatgaaatgactaaagtctcgtatagtcacttatgacgtgttcttcaagaagttatatcaccattgcctacaattgcatataatttattTAtttaagtagcctcacatttttctgtttgtctttataataaaaatccatatatgcatgcacaagaaaaccaatatgtgagccatatttggtctctgacattttagttgtaaaaatcagttcgtcaTtatctctttgctggcttgagtgaaggtaatcaagaaccaggaagctgtcgatctggtgaactctatcaaggacccacaggccacagcaaagcgactaacatcagaggttcttgcgaagagatga
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| CDS seq | atggaagactaccatgtggcagagtataagtatgcaaataatcatgaatttggtctgtttgctatttatgatggccatttgggagataaagtgcccagctatttgaaagccaacctttttaacaacatactgaaagagcctctcttctggacgaaccctcaagaagcaattaaaaatgcatacagctctacaaacaagtatattctggaaaattctaaacaactaggaccgggtggttcaactgcatcgaagctgctcgctgatggggtgctgcgacgctcggcaactatgacatgttgcagtcacttccaaggagtttctggtgctggccgtgtgaaggaagttgctcctcggtgggctgttgtgtgtgaaagaggagccgctaaccaacttactgttgatcatgaaccccacacgacaaatgaacggaagaggattgaaaagcagggtggttttgtttctactttccttggtgatgttcctcgagtaaatggccaacttgcggttgccagagcaTttggtgatcagagcctcaaggcatacttgagctcagaaccagatgttaaacatgtacctataaactcgagtgtagaatttgtcatacttgctagtgatggattatggaaggtaatcaagaaccaggaagctgtcgatctggtgaactctatcaaggacccacaggccacagcaaagcgactaacatcagaggttcttgcgaagagatga
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| Protein seq | MEDYHVAEYKYANNHEFGLFAIYDGHLGDKVPSYLKANLFNNILKEPLFWTNPQEAIKNAYSSTNKYILENSKQLGPGGSTASKLLADGVLRRSATMTCCSHFQGVSGAGRVKEVAPRWAVVCERGAANQLTVDHEPHTTNERKRIEKQGGFVSTFLGDVPRVNGQLAVARAFGDQSLKAYLSSEPDVKHVPINSSVEFVILASDGLWKVIKNQEAVDLVNSIKDPQATAKRLTSEVLAKR |
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| Function | Probable protein phosphatase 2C 44 [UniProtKB/Swiss-Prot:Q0JAA0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0006900 | OsLima_08g0006900.01 | Chr08 | 6990611 | 6994050 | + | NAM | ||
| CDS seq | atggaagactaccatgtggcagagtataagtatgcaaataatcatgaatttggtctgtttgctatttatgatggccatttgggagataaagtgcccagctatttgaaagccaacctttttaacaacatactgaaagagcctctcttctggacgaaccctcaagaagcaattaaaaatgcatacagctctacaaacaagtatattctggaaaattctaaacaactaggaccgggtggttcaactgcatcgaagctgctcgctgatggggtgctgcgacgctcggcaactatgacatgttgcagtcacttccaaggagtttctggtgctggccgtgtgaaggaagttgctcctcggtgggctgttgtgtgtgaaagaggagccgctaaccaacttactgttgatcatgaaccccacacgacaaatgaacggaagaggattgaaaagcagggtggttttgtttctactttccttggtgatgttcctcgagtaaatggccaacttgcggttgccagagcaTttggtgatcagagcctcaaggcatacttgagctcagaaccagatgttaaacatgtacctataaactcgagtgtagaatttgtcatacttgctagtgatggattatggaaggtaatcaagaaccaggaagctgtcgatctggtgaactctatcaaggacccacaggccacagcaaagcgactaacatcagaggttcttgcgaagagatga
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| Protein seq | MEDYHVAEYKYANNHEFGLFAIYDGHLGDKVPSYLKANLFNNILKEPLFWTNPQEAIKNAYSSTNKYILENSKQLGPGGSTASKLLADGVLRRSATMTCCSHFQGVSGAGRVKEVAPRWAVVCERGAANQLTVDHEPHTTNERKRIEKQGGFVSTFLGDVPRVNGQLAVARAFGDQSLKAYLSSEPDVKHVPINSSVEFVILASDGLWKVIKNQEAVDLVNSIKDPQATAKRLTSEVLAKR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0500300 | SBH | 3.514781 | 1.873711 | 2.348974 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52000 | SBH | 2.228341 | 1.084241 | 0.900681 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0500300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0008580 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020930 | SBH | 0.343644 | 1.711413 | 0.852961 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0020820 | SBH | 1.657512 | 12.773442 | 7.134265 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0007440 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007250 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0120700 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007210 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0112900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0025800 | RBH | 0.407417 | 0.145474 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006980 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006830 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0026100 | SBH | 1.366043 | 0.908712 | 1.066285 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006920 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G020600 | SBH | 0.554375 | 3.441420 | 1.481318 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007060 | RBH | 0.0 | 0.0 | 0.0 |
