Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0020820 | OGI:08071000 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:24754959-24759606 | ||||||||
| Gene Symbol | OsPP2C66, PP2C66, OsPP102, - | ||||||||||
| DNA seq | cagacaaggtgcaaaattaggaagcttttatacttgcagctgaaaattcatgagctaatacatatagaattgagttcttgttccagcatagaaacagcaggtgaactgaacatccatccaccaagagaggagaagggaggaggtattacatgattttacagaaggcttctcacagaacaaaaactttcttatacacaaaaaaacaagtaaagaagcccaagcatgaaacacctcctgacaagagaacaaaaggaagaacagatcgatctggagtgtacagggtatgaaacaatctgggtgaagaaacctaaaaatcggctctaataaaatcccagggaccgaagagatttgcacactcctggctgaaattgccggtttcgactgaaatgcgctctcagcctgacttaagcgggggaatcgttcatcgccgcttcctccagctggttgatctcttctcgcctgaaagtattctgggaaggttcaagagggaattgacccgcgtcacaccttcgagtgctgaccattcctcctcctcgtttgtggatatacaatcagcaaggctgcgggcagatccacatctttcaggttcctttgagactggaggctcctctaccggtacaatctcatcaacatcccttaatgtgtaggagtgctgcaatgctggctcggtgatttgctcttcactggagatatgtgcatctccttgtgcaatgtcttggtcaaccttagcaacggtgtctgggattgcaacatcctctgtagtttcttcctcgctctcgttctcttgaatcaagtcaggtgactttgcatggtctaagaataggcacacaacagcgcagtcatcgctcttggatgttgggaacttcaatctccatgatctgacagcacagtcgacaagagccctggcagccgttgcacgagatggagctgcggctactatgtcaacagcctccttgtttgagaggacgtcccaaacctacatgcattgagtttaccaatattacaagttgaagcagctgaaggagtgaaggctgtaacatctttgtatgttaaatcaaactattccccaatccccatggattaagtagggattggagaacatgatgcatttctattcacaaaaggaattagtaactttcaacaccatattaagtagtagtaagaaagtaataagatgataagaaaaataccccatcagtggccagtattatgaactcatccttttcagtaagacgacgataggatatctgtggaacagatattaaaccataatctttaaggcagaagtctccaaaagctcttgccattgccaatccaggagagtcattatttggcaaccatactctggcaacttctggttcatcctgaagagcaaaaactcttcccctacactgctggatcctcgcagcttcccctaaataagaaatatgaagattagcgattaaccaaaaagagtgaccaatccagacaagtaactatacttagtgcgttaataagtttgactgaagccatatctaggaggaaaagaagaaaatcctaaatgcgcagttaaagagaaagttcagttttgaaaacacaagggtacccactgaaatgataagtgagaaatgaacatacttggaaggttaggcttcaaatcaactgtgagttgtacagcagttagattattggcagcatctcgtgtccccattattgctctcgagtccccaaggttcccaaccacaagatccaatccctggaaaataagccatgtccagttcttctgtcattttgatttcaatatctaccactattttttttgttccaaatgctggtcagttatctacgaatactagaacaagtttagaagcatccctcacctgttttactaacgtgactgctgttgatccactgcaaaagcaatcaactgtagggtgcattttgagttccttgtccatcaatttgaaagccttaaaataagactgcttaagtggaagaaacatctcaggaagcttctcgctgtcatcagcatattcaccccattcatcatcaacaacaggtgactcttctgaattaacacttccagaaatgcttccattttggtgggaactagtgtcctcattggcactggttttccatagtgtgcgtattttgacaggaagagaatctctgaccttcttggcaacaaaatgaccatatggaccatgaccatcaaacacaccacagaagacactatcacttgtattaaagttctgcaagaatggaagggctaggtcagataattgtttgcgctcctagtaccagtgatgtgataagctggtaatgtctataattaatttgtttaaaagcaaatcgacaatgcacattacttttcaggaaaataaactgaagggtatagatgggttctaacaaactgtatttgtgggattctattcagtatgctcatattttcacaatggagtattccctacacaaagaatggtagacacaggtagttgggtgaacaatgtgagaaatgcacataggatagaatcagataatcagacctcaaatagcacaaatgagatggataaagtcagcaactaggcaaggaaaaggtatcaaattagcatccaatcacccatgatggaaccctcacaaggcattgttccatgcgattagcaattgttgcaactgacccttagtaaatgaggatactcctatgctaagaggttctattagcaagacatcgaacagtccctataagggtatttcatattcatgttgaaagttgactagaaatatgatttctgttataactcacatttcaaaacagaaggcgaggcaaaacaagaaaaaatataaaaaatataaatcccaagccaaaaggaagaaaataaaaactcaattccaacagatggaaactatttgtcaaggaagtacctcctcactccaataaagaagtacttacctattttcgttgaatattagcaatcaatagcattatactgagaatctttaagcataaattctctttactgtcctctgaagagcatgatcaccatgcatatcataaagtggctgcttttacttgtttgacttcctaaaacaagctcacaagatattcctatgtagctagataagtttagctagctgcctagttgtaggtccaaaacaaaagtgaaaattatccatgattgtacttcaccactccctttaggtaaactccaccaattgtgtgatggagtcaacataactacttgcttacatatcatgaaaatgaagggagtcgattagttgattaggatataagctaaatataccaagccagctattactagaccagactaatcgcttgacctgtcaagagcatctagttgaagaaacagccaaaatcatactcttctttaaactaacagaagaatacaaagaaaggtagaagcttttgccaagggtcacaggaaaggatctcgcttggactatacagaaagttttgaatcaacgcaagcacgagcagacgactccaagtctccaatattccaactaacacgtcccatttatcagattttcttttaaaattatcaggattcaggaaacattacaataatacagaaaaagtgagctttcccccccacaattttcacatacaaaaagaaccagtaaactcctcgttttcagattaaatctcaaaacaatctaaagctgaatccttcccatttcgaattaagtcatccaacaaagcaagaagacgctcccagtgagaccaaatcaagaaatgctcgaactgtttcgaagaacaaactagaaaaatagaagaggttttgcttattctgttataaagtcaaatcccacatttcgaatcaagcactccactaaaacgctcctccctgtgaatcgaatatacacacactccgaattcaaatccgctattgatccaaagccaataccgtgaagaaaaaaaaagttcaaagaagacttcggaaagatcgagtaaacgcaagcaccaagttctgaaccgagcaacacggcgaggaaaaaggcgggcgagattttcagaaccaacacgcgaaggaaaacgctactagtaccaatgatcaggaggactcagaagccatccaccatggctgcctggctcacctcccacacgaccatggcgtcctggttggtgcccttccgcccctgctgcgtgtgcaggcacgccgccgcgctcgcgccgttgacgcacaccctcccctcgaccttcgcgagctcctcctccgtcatctcccctcctcctccgccgccgtggtgcagcttcttgccgccgacgccgatggagaagacgccgccgccgccgccggaaacagccccgccccgctccaccccccgctgcctcctcctccgccaccgctgcggccacccgggtgacgctcccgcgccggcgccggcgcggggaggcaggtcggaggagaggcaggagcccatggcggcggcggcaacacggcggagcacagagttgggcaaccgcttcgcaaaagtgcggattgtatagggtttttgatgtttcctcgtcttgtagacttgtaggctactcctactactccttgaggtctcttctcacttgttgagtggagtatcatatgatttgtatggtcttgttaacttggagatttggggttgaaaatgaagaaaaaaagtatttgttttagta
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| CDS seq | atgggctcctgcctctcctccgacctgcctccccgcgccggcgccggcgcgggagcgtcacccgggtggccgcagcggtggcggaggaggaggcagcggggggtggagcggggcggggctgtttccggcggcggcggcggcgtcttctccatcggcgtcggcggcaagaagctgcaccacggcggcggaggaggaggggagatgacggaggaggagctcgcgaaggtcgaggggagggtgtgcgtcaacggcgcgagcgcggcggcgtgcctgcacacgcagcaggggcggaagggcaccaaccaggacgccatggtcgtgtgggagaactttaatacaagtgatagtgtcttctgtggtgtgtttgatggtcatggtccatatggtcattttgttgccaagaaggtcagagattctcttcctgtcaaaatacgcacactatggaaaaccagtgccaatgaggacactagttcccaccaaaatggaagcatttctggaagtgttaattcagaagagtcacctgttgttgatgatgaatggggtgaatatgctgatgacagcgagaagcttcctgagatgtttcttccacttaagcagtcttattttaaggctttcaaattgatggacaaggaactcaaaatgcaccctacagttgattgcttttgcagtggatcaacagcagtcacgttagtaaaacagggattggatcttgtggttgggaaccttggggactcgagagcaataatggggacacgagatgctgccaataatctaactgctgtacaactcacagttgatttgaagcctaaccttccaagggaagctgcgaggatccagcagtgtaggggaagagtttttgctcttcaggatgaaccagaagttgccagagtatggttgccaaataatgactctcctggattggcaatggcaagagcttttggagacttctgccttaaagattatggtttaatatctgttccacagatatcctatcgtcgtcttactgaaaaggatgagttcataatactggccactgatggggtttgggacgtcctctcaaacaaggaggctgttgacatagtagccgcagctccatctcgtgcaacggctgccagggctcttgtcgactgtgctgtcagatcatggagattgaagttcccaacatccaagagcgatgactgcgctgttgtgtgcctattcttagaccatgcaaagtcacctgacttgattcaagagaacgagagcgaggaagaaactacagaggatgttgcaatcccagacaccgttgctaaggttgaccaagacattgcacaaggagatgcacatatctccagtgaagagcaaatcaccgagccagcattgcagcactcctacacattaagggatgttgatgagattgtaccggtagaggagcctccagtctcaaaggaacctgaaagatgtggatctgcccgcagccttgctgattgtatatccacaaacgaggaggaggaatggtcagcactcgaaggtgtgacgcgggtcaattccctcttgaaccttcccagaatactttcaggcgagaagagatcaaccagctggaggaagcggcgatga
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| Protein seq | MGSCLSSDLPPRAGAGAGASPGWPQRWRRRRQRGVERGGAVSGGGGGVFSIGVGGKKLHHGGGGGGEMTEEELAKVEGRVCVNGASAAACLHTQQGRKGTNQDAMVVWENFNTSDSVFCGVFDGHGPYGHFVAKKVRDSLPVKIRTLWKTSANEDTSSHQNGSISGSVNSEESPVVDDEWGEYADDSEKLPEMFLPLKQSYFKAFKLMDKELKMHPTVDCFCSGSTAVTLVKQGLDLVVGNLGDSRAIMGTRDAANNLTAVQLTVDLKPNLPREAARIQQCRGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDYGLISVPQISYRRLTEKDEFIILATDGVWDVLSNKEAVDIVAAAPSRATAARALVDCAVRSWRLKFPTSKSDDCAVVCLFLDHAKSPDLIQENESEEETTEDVAIPDTVAKVDQDIAQGDAHISSEEQITEPALQHSYTLRDVDEIVPVEEPPVSKEPERCGSARSLADCISTNEEEEWSALEGVTRVNSLLNLPRILSGEKRSTSWRKRR |
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| Function | Probable protein phosphatase 2C 66 [UniProtKB/Swiss-Prot:Q6ZKL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0020820 | OsCMeo_08g0020820.01 | Chr08 | 24754959 | 24759606 | - | NAM | ||
| CDS seq | atgggctcctgcctctcctccgacctgcctccccgcgccggcgccggcgcgggagcgtcacccgggtggccgcagcggtggcggaggaggaggcagcggggggtggagcggggcggggctgtttccggcggcggcggcggcgtcttctccatcggcgtcggcggcaagaagctgcaccacggcggcggaggaggaggggagatgacggaggaggagctcgcgaaggtcgaggggagggtgtgcgtcaacggcgcgagcgcggcggcgtgcctgcacacgcagcaggggcggaagggcaccaaccaggacgccatggtcgtgtgggagaactttaatacaagtgatagtgtcttctgtggtgtgtttgatggtcatggtccatatggtcattttgttgccaagaaggtcagagattctcttcctgtcaaaatacgcacactatggaaaaccagtgccaatgaggacactagttcccaccaaaatggaagcatttctggaagtgttaattcagaagagtcacctgttgttgatgatgaatggggtgaatatgctgatgacagcgagaagcttcctgagatgtttcttccacttaagcagtcttattttaaggctttcaaattgatggacaaggaactcaaaatgcaccctacagttgattgcttttgcagtggatcaacagcagtcacgttagtaaaacagggattggatcttgtggttgggaaccttggggactcgagagcaataatggggacacgagatgctgccaataatctaactgctgtacaactcacagttgatttgaagcctaaccttccaagggaagctgcgaggatccagcagtgtaggggaagagtttttgctcttcaggatgaaccagaagttgccagagtatggttgccaaataatgactctcctggattggcaatggcaagagcttttggagacttctgccttaaagattatggtttaatatctgttccacagatatcctatcgtcgtcttactgaaaaggatgagttcataatactggccactgatggggtttgggacgtcctctcaaacaaggaggctgttgacatagtagccgcagctccatctcgtgcaacggctgccagggctcttgtcgactgtgctgtcagatcatggagattgaagttcccaacatccaagagcgatgactgcgctgttgtgtgcctattcttagaccatgcaaagtcacctgacttgattcaagagaacgagagcgaggaagaaactacagaggatgttgcaatcccagacaccgttgctaaggttgaccaagacattgcacaaggagatgcacatatctccagtgaagagcaaatcaccgagccagcattgcagcactcctacacattaagggatgttgatgagattgtaccggtagaggagcctccagtctcaaaggaacctgaaagatgtggatctgcccgcagccttgctgattgtatatccacaaacgaggaggaggaatggtcagcactcgaaggtgtgacgcgggtcaattccctcttgaaccttcccagaatactttcaggcgagaagagatcaaccagctggaggaagcggcgatga
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| Protein seq | MGSCLSSDLPPRAGAGAGASPGWPQRWRRRRQRGVERGGAVSGGGGGVFSIGVGGKKLHHGGGGGGEMTEEELAKVEGRVCVNGASAAACLHTQQGRKGTNQDAMVVWENFNTSDSVFCGVFDGHGPYGHFVAKKVRDSLPVKIRTLWKTSANEDTSSHQNGSISGSVNSEESPVVDDEWGEYADDSEKLPEMFLPLKQSYFKAFKLMDKELKMHPTVDCFCSGSTAVTLVKQGLDLVVGNLGDSRAIMGTRDAANNLTAVQLTVDLKPNLPREAARIQQCRGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDYGLISVPQISYRRLTEKDEFIILATDGVWDVLSNKEAVDIVAAAPSRATAARALVDCAVRSWRLKFPTSKSDDCAVVCLFLDHAKSPDLIQENESEEETTEDVAIPDTVAKVDQDIAQGDAHISSEEQITEPALQHSYTLRDVDEIVPVEEPPVSKEPERCGSARSLADCISTNEEEEWSALEGVTRVNSLLNLPRILSGEKRSTSWRKRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.657512 | 12.773442 | 7.134265 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0500300 | RBH | 3.514781 | 1.873711 | 2.348974 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g39100 | RBH | 2.174680 | 1.153021 | 0.587262 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0500300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0021030 | RBH | 0.931668 | 18.424322 | 3.518188 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020930 | RBH | 0.343644 | 1.711413 | 0.852961 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0013240 | RBH | 0.0 | 1.253917 | 3.277128 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0021040 | RBH | 0.151422 | 0.360843 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020910 | RBH | 2.263613 | 13.778768 | 6.576256 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0394200 | RBH | 9.172823 | 11.4978825 | 8.175683 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020800 | RBH | 0.278631 | 0.527351 | 1.155910 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0414300 | RBH | 10.5312215 | 5.461658 | 9.5673285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0020120 | RBH | 0.278877 | 0.053884 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0020410 | RBH | 0.286996 | 9.302847 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0020250 | RBH | 3.132623 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0021100 | RBH | 0.750283 | 1.033990 | 0.742000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0020450 | RBH | 0.157073 | 4.304512 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G020600 | RBH | 0.554375 | 3.441420 | 1.481318 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0020760 | RBH | 2.357359 | 13.002501 | 4.915627 |
