Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0006850 | OGI:02047730 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:6868448-6869054 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtttctaactttccctcgatcaggtatcagcttcattcattcatggataaaaaatccaatagattgttctccggactacaaaaatttacagaaaaatgctcagtgcatttcctgaaaacttatgccatagatcactacgtacttatgctaaacgatgtattttcagactggttagagtcttggagctgtttatttccttcatttcaggcttcttgctggttcagagccatgtaaagatcgagttgcttgataaaatgttccagtgcttgattttttattattttcagcttggccatattgttttctaagctttgcgagtagctcaaatgaaggccatggtgatctgcttgagcaacatggcaaTAGtggctggtacaaggtatatgtctatattggtactgttgccttattgcctacggagaggggttgatgattgtgaaatttatacattgatcagttttgtgtttctcccggacgggttatggcagatagatagaaaagatgatggtgaaaattggtacaaaagctacatgcctacatgttcgatgaaatacttcggtatccccgctgtcctaacaagaaattttgagcagccattatcgtaa
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| CDS seq | atgtttctaactttccctcgatcagcttggccatattgttttctaagctttgcgagtagctcaaatgaaggccatggtgatctgcttgagcaacatggcaaTAGtggctggtacaagatagatagaaaagatgatggtgaaaattggtacaaaagctacatgcctacatgttcgatgaaatacttcggtatccccgctgtcctaacaagaaattttgagcagccattatcgtaa |
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| Protein seq | MFLTFPRSAWPYCFLSFASSSNEGHGDLLEQHGNSGWYKIDRKDDGENWYKSYMPTCSMKYFGIPAVLTRNFEQPLS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0006850 | OsLima_08g0006850.01 | Chr08 | 6868448 | 6869054 | + | NAM | ||
| CDS seq | atgtttctaactttccctcgatcagcttggccatattgttttctaagctttgcgagtagctcaaatgaaggccatggtgatctgcttgagcaacatggcaaTAGtggctggtacaagatagatagaaaagatgatggtgaaaattggtacaaaagctacatgcctacatgttcgatgaaatacttcggtatccccgctgtcctaacaagaaattttgagcagccattatcgtaa
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| Protein seq | MFLTFPRSAWPYCFLSFASSSNEGHGDLLEQHGNSGWYKIDRKDDGENWYKSYMPTCSMKYFGIPAVLTRNFEQPLS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.234461 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0016840 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0016760 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0118300 | SBH | 1.3433125 | 3.95913 | 5.7880165 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007160 | RBH | 0.234002 | 0.0 | 0.101624 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0111100 | RBH | 5.0005455 | 2.44282 | 3.968863 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0017070 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006930 | RBH | 0.188160 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006810 | RBH | 24.586584 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0016950 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006880 | RBH | 0.237767 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007180 | RBH | 0.606486 | 0.538086 | 1.151477 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0016830 | SBH | 0.0 | 0.0 | 0.000000 |
