Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0016840 | OGI:02047730 | 12/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:16400172-16402602 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGAGGGTGAAGACAACGAAAAAAAGGACGAACTTTGGATCAACAAATTGTCACTTTCAAGAAATTGGGCTTTGCTGTCAGTTAAGTAAGAGACTGAATCCTTAACTCAGTTAAGGAAATTCAGTCTGTACTCTATCCTTCCTCTAAACCAGGATGTTTTTTTAGGGTAGGCTAGGTAAGGTTACTGTTGTTTGAAAGGCTAATGGCGATACTGATCGATGTTAGTCCTGGATGATGGTTGAAGTCTGAGCATGTAGTGGTTCCCCGTTTCAGGGTTTTGTGGTGTTGATCTTAGAGGGATGCCAACAGTATAAGGCAGTCACAATGGTTCATGTTATTGGCACACCAATGCATGCATGCCCAGTTGGTGGCTTGGAGATGGAATGAATATGACGCGTGTTTACCTGGTGCTCCTGTAACCTAAAATCCACAGTTCCTGGCTCATTTGCGGCTGTTATTGAGTGATATATAAACATTTTATTGGAAGACCTTCTAATTTTGGTGGCTTTCAAAAATTTTACATTATGCAACTGTGATCACTTGATGCTGCTGCGAAAATTTTGTATGCGAAGAATAGCAAAAATTTTCATTTGCTATTTCATTTATCGCCTGCATGTGTCATGATATAATTTGATGTCAGTGCAGATAGTTGACAATTGATTGGCATGGAGGTGGAGAGGAAGATAAATACAATGGTTGCCCACAATACTTCTTTCTAATGGTATATATCTGCTGATTACATCTGTTGATTACATGTTCTAGATTAGCTTACCATACGCTCAGATAAGTTGGTTTTTGTTTATCCCAATACAGAGAACATTTTTTTGAATTTATTATTGCCTGGAATATTAGTGTTTGGGAACGTAAGCTGCCTCAAGAGTCAAGATAGTGTTAGTGGTTTCATGTTTTGTCTCTGCACTTACACTGCAGAATTACTATGATATCCAGTTATCCTCTTCATAAGCATAGGGTAAACTAGGAAACCCGGTTACAGCTGCAAGTCTTTGTCCAAAACCACCTACATATTGTCACGCACTATAGGTTCCATTGAAACTATATATATACAAGGGGAAGTACTTACGTGTTTTAAAGTTTAATGGATCATTTGCTCTGATATAGAACTTATTGTGATGGCTACATATTTCTTCCTTCGAATGTATATCATATGTTTGCTTTTCTCCTATTTGCTACACCACTATTGATGGTTTTACCAGATGAAAATAATTATGCACTGTGCACTGTGCCTTCTATTGAGACAAAAGAACCTCTGGGAACAGAAACCGAAGATTTGCACTAGAAATGCTCGTTGGCAGATATGTTCCAGATAAGTGGTTTTCTGAAGCATTTAATATGCTACGTCTATAGAAGCCCCAAATCATGAATACTTAGGAAAATGGAAATAAAGGCTGAACTTGCTATCCCTTTTACTAGCCAAAACCAGTCTGGTCAAGAGGAAATCCTTAATTAACAGTACAAACTGAATCCTTCCTCTAAACCAGGTTATTTCAGTTTCTGACTTACATGTTCTATTCTATTTCAGTTCGTGACTGAAACGTTGGTAGAACCCTGCACAAATAGGTGGTGGCATCTTAATAGAATGAAAAATGATGGGAACTCCACAACAGATTTGTCAACACAATCAGGTTTTTTCGTTTCTGCCAACGCACTAAGGTGCAGCCGGGAAAGAGCATCCGATGCAGTGGGGGAACGAGGTGACGATCCTGGTGGTCAGCGACGACAATCGATGCCATTATTATTGCCTGCTACTAAGACAAAAATTGGTGACCTGCTGATTGATGTTTCTAACCTTCCCTCAATCAGGTATCAGCTTCATTCATTCATGGATAAAAAATCCAATAGATTGTTCTCCAGAGTACAAAAATTTACAGAAAAATGCCATAGATCACTACGTACTTATGCTAAACGATGTATTTTCAGACTGGTTAGAGACCTGGAGCTGTTTATTTCCTTCATTTCAGGCTTCTTGCTGGTTCAGAGCCATGTAAAAGATCGAGTTGCTTGATAAAATGTTCCACTGCTTGATTTTTTATTATTTTCAGCTTGGCCATATTGTTTTCTAAGCTTTGCGAGTAGCTCAAATGAAGGCCATGGTGATCTGCTTGAGCAACATGGCAATAGTGGCTGGTACAAGGTATATGTCTATATTGGTACTGTTGCGGCCCTATTGCCTATGGAGAGGGGTTGATGATAGTGAAATTTATACATTGATCAGTTTTGTGTTTCTCCCGGGTGGGTTATGGCAGATAGATAGAAAAGATGATGGTGAAAATTGGTACAAAAGCTACATGCCTACATGTTCGACGAAATACTTCGGTATCCCCGCTGTCCTAACAAGAAGAAATTTTGAGCAGCCATTATGGTAAATATGGTCTGTACTCAATTTTTTGTGCACTGCTGCAGCCACAAG
More
|
||||||||||
| CDS seq | ATGGCGAGGTTCGTGACTGAAACGTTGGTAGAACCCTGCACAAATAGGTGGTGGCATCTTAATAGAATGAAAAATGATGGGAACTCCACAACAGATTTGTCAACACAATCAGCTTGGCCATATTGTTTTCTAAGCTTTGCGAGTAGCTCAAATGAAGGCCATGGTGATCTGCTTGAGCAACATGGCAATAGTGGCTGGTACAAGATAGATAGAAAAGATGATGGTGAAAATTGGTACAAAAGCTACATGCCTACATGTTCGACGAAATACTTCGGTATCCCCGCTGTCCTAACAAGAAGAAATTTTGAGCAGCCATTATGGTAA |
||||||||||
| Protein seq | MARFVTETLVEPCTNRWWHLNRMKNDGNSTTDLSTQSAWPYCFLSFASSSNEGHGDLLEQHGNSGWYKIDRKDDGENWYKSYMPTCSTKYFGIPAVLTRRNFEQPLW |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0016840 | OsARC_02g0016840.01 | Chr02 | 16400172 | 16402602 | + | NAM | ||
| CDS seq | ATGGCGAGGTTCGTGACTGAAACGTTGGTAGAACCCTGCACAAATAGGTGGTGGCATCTTAATAGAATGAAAAATGATGGGAACTCCACAACAGATTTGTCAACACAATCAGCTTGGCCATATTGTTTTCTAAGCTTTGCGAGTAGCTCAAATGAAGGCCATGGTGATCTGCTTGAGCAACATGGCAATAGTGGCTGGTACAAGATAGATAGAAAAGATGATGGTGAAAATTGGTACAAAAGCTACATGCCTACATGTTCGACGAAATACTTCGGTATCCCCGCTGTCCTAACAAGAAGAAATTTTGAGCAGCCATTATGGTAA
More
|
|||||||
| Protein seq | MARFVTETLVEPCTNRWWHLNRMKNDGNSTTDLSTQSAWPYCFLSFASSSNEGHGDLLEQHGNSGWYKIDRKDDGENWYKSYMPTCSTKYFGIPAVLTRRNFEQPLW |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0016760 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0272700 | RBH | 0 | 0 | 0.103852 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0016530 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0111100 | RBH | 5.0005455 | 2.44282 | 3.968863 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0017070 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0016630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0017170 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0016950 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0016690 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G017130 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0016830 | RBH | 0.0 | 0.0 | 0.000000 |
