Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0004490 | OGI:08010570 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:3817492-3824145 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | catgaaaagaatatattgtcattgaaattattcacccgttgcaacgcacgggcatttttactagcataaaaaatagtaaaatgtatagacggttcttaaacttgtagggttgtgtcatctaggtttctaaactatcaaaatgcagatccaggtcccagaaacttatcaaagtgtatcatctagatcctaaatcgacacaacccctctagaattctacatgacacaatatgacaagttctgaaacctaagtatgcattttaagagtctaaggatttagatgatacacctttacaagtttaaagaccgcccttgcactttaattttttttaaaaaaatacatggactcgagatagtagagtcaaaagtaattgactgaacataccacaagtttaaaccagatcaactagtcatgaactcaaggtgagtgtcatacatgatgctgttatgatcgatcactcttctgtgcgtcatgattctcacgatggcagcatcgatctgcagcggcttcctgttctgatcagacaggcaggattccttccgtgccaccactttagtctgtgagaatcttgacttgaacaacatgatagtattgcttcaggcctagagatagtattgcagcaagacaaaagacaattgtcagttctgggaaccaaagtgtCATCccacttgagtcggtgacaaatcctctgtaaccaaatttttttttctaactttgaatctagacaaatcttatccagattcataactaaaaattgactctcttttcttcacatagggagtagggattagagagaaactaggctagggtgcataccttctggtgttggtcagacaacaccatcatatcttcaccgtatctcgtcagtttaagtgtcggacggttggcatggacgtccactgcgaatctcacatccgcctctgctttctcgacctcctccagacttgcattcgcacaattgatggagacactgaatttcttgacgcatggattacgcttgagcatccaacagatgtcagagcgaagatgagcgcttttcctcttccgcacattgacattttcaacaactactttaggaaataagccgcTAtatatgctgtgaaagagataataagatggaatgtgtaagccaagccaatcaagtagcctgatggaataataatgaaaaacaattattggagccagaagtaactgaaagttgaaaattacacaaaagtagggatcgatcgatcaaatgttgatgcaagtacgtacctcttcgtaaggggagagcatctcgtcctcccaaagcctcgtggtatgaagggtaagacggtttggatggacggtggcggcgtgtgctaacgccgcctccacttgctcgacttccgcgggacggcccccacgacagttgattctaacttggactctttggagtgaatttgttccgagatgggcaaagctaagcagctttccaaaaccaggtaggattcgcacatagacactgaactcgagaactttgagatttggcatgacagcattctgataaaacaggacacacatattgggtgctataagtagccatcgccgggaattatcttgtcgccactgactagtactatcccgtcgtattccgtatgcagcttgaggtagcggagctttggtaacctcccaagtgcttccatgtcctgcccatccaaaacatgcactctcaggttaagataggagaggttcacaagaagcgacgagttcatcatccacaccggcattctgtgaaacctcaacgacgtcaagcacaggtatcggaggcgttgaggggaagcgaatcctgattcccacgcgacgcccactctttggtaaaagtggccctcaatctccacgttgagaagcttgtgcagattgcatagggactccagcaatgatgatgttccattggcaagcccatccagatagagactagtttacctaggaccttcacaaactgccacctatcatccatacgaggcttcatcctcagctcctgcagggatgtcagcttcccgatcgcactaggcgacacccttgcatcaaaatcaacacgcaggcacagcagtttcgtcatctggcctactgattccggcagatctcgtatattagaatactgcacatcaagtactagtagcaacttcaaattcccgacatcctctgggagcgaactagaatcaactttttgtagactgaggtatctaaggtgaagtaaacttccaacatgccgcagattaatttcactttctgtgatcaaattattacgattttctgtttctaacacacggagaacctggaagcttggtaatttcttgttaatatcagaggcagagcactcattcgtaacaaaggtccttagttgcttcaactccatatcagccagccgatgcccactctcttttaaaccccaataattatgcagaactagtctgcgaacattgttcctttgaatttcacgttcccaactggcattcgctatagtgacaaagttctctttagctgacaataagcacattatatcaagcatgatatcgtgaacacggcaaccatttACacaacctgagtattcatcctccactggctggatcagacttctgtttatcagctcgttgaagtatccctccccaatttcaaataaccctatgtcagcttcttgtttctcctgtatgaaaccctcagctacccacctccatattaacatttttttctcaatgtaataatcttctggaaatatgcttagatataataaacaaggcctcagatgcaaaggcaaattgtagtagctcaaacacattatccttggagtatgatgcatgtctgcgtgctcaagatcatcaaacgatatcatcatttcggaccagcactcacgtggtttgttggctaataaactaactgatgtaatgataactaacggcacaccgccacATtttttcagaattatgtcacatgccacagctgatggagtagggagagacccactttgatcaccaagtattcttgtatatagtaactttcttgactcatcataagaaagcggtttcatcttgtaaacgtcaccaccggcatgtctggcaatttcataaatacgagtagttatgagtactctacttctgcatttactgccttgtagagcacatctgattacagcccatgaacttctatcccatatgtcatccacgacaataaaacagctataaatccacatcacagtgaaagggccatgagtaagtaactaaaagaattaaaattaatgaagaacatgtgaaatcaatgtgttgatttaatctatttgataaacaaatttcaaaagtaaatgtttattgaaaatacggtgaataatgttttcggtcgaggaacaatgaagccggcactgggtcgccaatcagaccgggtgctgcacgccggttagactagaggtatccggacggtctgaccggttagctcgatggtcagatcggcagactccgggttggagttggtttcgggtaaggttattttcgtggattttctagattgcttcatggAtatgacttctagatattttctattcgtatgtgatactattgtgtactgatgtgagtcaagttggtgcgaatttgtatttggatatggagTtttttttgttgttcatgtgcaggtgtagcttgaggctacggaagtatagttggtgatggatcgagactagtcttggagaagttgaggtccatatggtcaaggatatcacgtgggatgctcagactagagaaCAatacacatggaggtgaaggtttccatatggcatccaagtggtgttgtgtgcgtatggaaaaatgagttaaatttggattgatggaggtgaaggtttccatatggcatccaagtagtgttgtgtgcatatggaaaaatgagttaaaTttggattgaagtcgaagtttggaaagattagagtgtggagttatatgaggatgttgtttctctggTttgataggtttcttatgtgattaggagtcctagttctagtagaattcgtggttaggagtagccacattgtggatataaatagaagaggaattgaagctagaagatatcgacttttgggagaggaaattaagttagggtttactttgtgatttcaattctagttcgtgagttgagagaggagtgctttagatgcactttgtaaacacatattgatgcaataaagttgatctacctccgtgagctaaaggctccgataataatatattatgctataaatgtttcacttgagacataatgaagtttggatgcatggctacgggtgataaaggatctcaatttccaaaagagtactcgcacagtcactactacaacaaccatttttccatgcgggtgtttggattattccgtgcgggggttcggtccgTttgcagcctgtcgtctgaaaaaaccgccattttcgcgtgcgggcgggccgaccgcacgggataatcgattatcctgtgcggtcggtataacacgaaccctaataaaaaaatcaaaatccaCccacaaaccctaaccaaaatccacccacgaaccctaataaaaaatcaacactatcgacgttgtcgccgccaccaccgtcgtcgtcgccgccttcccgaaccccgccgttgtcgtcgccgccttcccgaaccccgctgtcgtcatcgtcgccttcctgaaccccgctgtcatcgtcgccgccttcccgtcggaggcgggcgacggatctggcctccccgcggcggcgtgcgacggatccggcctccccgcggcggcgggcgacagatccgacctccccgcggcggcgggagacgaatctggcctcccgccgatgtcgccgtcgtagccgattcaaccgccgccgccatagccatagccgtcgccgaggacgagggagagggagagagtgatgggaggaaggggaggagctgtagccgatgccgctctagccgagggtgccgccgtggaagcgagggctccgccaccgatgccgctctagccgaggacaacagggagagggggaggagccgtagtcgccgctgccgccgaggaccgccctagccgagggcgccgccgtcgccgaggatgagagggagagggagaaggcgatgggaggagggaaggaggagagggagaagtgtgggagggatttggataagtgtggggtgggaggagccggttggaccactttaTTtttTTGGGGGCAGCTATTtttcgtgtgcgggtcacttaacagacccgcacgcattatttttgcgcgcgggtctgttaagtggcccgcacacgaaaattgattttcgtgcaggtgatatccccgcgccggtccctttatttttccgtgcggtttcacttacggactgcctggaagcaaaaagaggaggtgtctagaaaaatcattcgtgtagtagtgagttgcagtcgcactggaggtgtttggagctggtacaagatagttcagggttctttttcttttaaaagttggtactattaagagggatgaagttacgtagcttaaagtggtgaagtgctgaaagatctaggtgtggagcatgttaggttgctagcttctcaagtcgagtgctaaacaaggtgggagaaacgggcaatataactaaaatcattatcagcatataattattgataaccatatatggtagagccgtagagggtgatcgtattcatacctctttatctggaggatttcatggagttcatcgatgagttgcttttcatccaacgatgtcgtatatgaattcatatacattcgcttgtcaaggccaatgagaatatccctaaggacTttcttcatgttaggatgcataccaactggaacaaaagccccacagtcgaatcccagcttaaacttatcatagactactttggcaagtgtggttttgccaagtcctccaaatccgacaacagaaactatcttcatgctcttatcagacgacagatcaatatcattcccaagggaaagcatctttaccagttcgttcatttgctcttccatgccaacaagctctgatgccttcatatacatagcctgcagtcgaggatcaacggttgctggaactgcaggcttggggatatcgttgaccatgtacctggcgcaggggaggagctaaaaaaaattagttcatcggtcactattcttgcttaattcctagtgttatccttaaacaatatatataaccattgatttcatcggaggtcggctgaccccgatggttgtactatagctccgcctacctgccacgccttgcagccacctcctggagcttatcgttgatttcctggatagctccagcgatcttgtgacgatgcttgctcttcttgaacagcttaccgacattcttggtgaggcgcttcagcaagCccggttcagcggcgggttccgggccgtcggcgcgcatgatgaggaagtcgtcgacgatgtcctccatgtcgtaggacgcctccctgaggtcgcgcgcccatagccggacctgatcgtcgagctgctccggcggcacctcgccaatcttgcggaggacggcgtgcacgctctccagctcctgcgagagagactcgatcttcttcctcacgcccgtctgcacgtcatactcgtccttgagaagctgacccagcttctggagcaggctgccgatcgcgcccgtcaccagatccat
More
|
||||||||||
| CDS seq | atggatctggtgacgggcgcgatcggcagcctgctccagaagctgggtcagcttctcaaggacgagtatgacgtgcagacgggcgtgaggaagaagatcgagtctctctcgcaggagctggagagcgtgcacgccgtcctccgcaagattggcgaggtgccgccggagcagctcgacgatcaggtccggctatgggcgcgcgacctcagggaggcgtcctacgacatggaggacatcgtcgacgacttcctcatcatgcgcgccgacggcccggaacccgccgctgaaccggGcttgctgaagcgcctcaccaagaatgtcggtaagctgttcaagaagagcaagcatcgtcacaagatcgctggagctatccaggaaatcaacgataagctccaggaggtggctgcaaggcgtggcaggtacatggtcaacgatatccccaagcctgcagttccagcaaccgttgatcctcgactgcaggctatgtatatgaaggcatcagagcttgttggcatggaagagcaaatgaacgaactggtaaagatgctttcccttgggaatgatattgatctgtcgtctgataagagcatgaagatagtttctgttgtcggatttggaggacttggcaaaaccacacttgccaaagtagtctatgataagtttaagctgggattcgactgtggggcttttgttccagttggtatgcatcctaacatgaagaaAgtccttagggatattctcattggccttgacaagcgaatgtatatgaattcatatacgacatcgttggatgaaaagcaactcatcgatgaactccatgaaatcctccagataaagagatgtgctctacaaggcagtaaatgcagaagtagagtactcataactactcgtatttatgaaattgccagacatgccggtggtgacgtttacaagatgaaaccgctttcttatgatgagtcaagaaagttactatatacaagaatacttggtgatcaaagtgggtctctccctactccatcagctgtggcatgtgacataattctgaaaaaATgtggcggtgtgccgttagttatcattacatcagttagtttattagccaacaaaccacgtgagtgctggtccgaaatgatgatatcgtttgatgatcttgagcacgcagacatgcatcatactccaaggataatgtgtttgagctactacaatttgcctttgcatctgaggccttgtttattatatctaagcatatttccagaagattattacattgagaaaaaaatgttaatatggaggtgggtagctgagggtttcatacaggagaaacaagaagctgacatagggttatttgaaattggggagggatacttcaacgagctgataaacagaagtctgatccagccagtggaggatgaatactcaggttgtGTaaatggttgccgtgttcacgatatcatgcttgatataatgtgcttattgtcagctaaagagaactttgtcactatagcgaatgccagttgggaacgtgaaattcaaaggaacaatgttcgcagactagttctgcataattattggggtttaaaagagagtgggcatcggctggctgatatggagttgaagcaactaaggacctttgttacgaatgagtgctctgcctctgatattaacaagaaattaccaagcttccaggttctccgtgtgttagaaacagaaaatcgtaataatttgatcacagaaagtgaaattaatctgcggcatgttggaagtttacttcaccttagatacctcagtctacaaaaagttgattctagttcgctcccagaggatgtcgggaatttgaagttgctactagtacttgatgtgcagtattctaatatacgagatctgccggaatcagtaggccagatgacgaaactgctgtgcctgcgtgttgattttgatgcaagggtgtcgcctagtgcgatcgggaagctgacatccctgcaggagctgaggatgaagcctcgtatggatgataggtggcatctctatctggatgggcttgccaatggaacatcatcattgctggagtccctatgcaatctgcacaagcttctcaacgtggagattgagggccacttttaccaaagagtgggcgtcgcgtgggaatcaggattcgcttcccctcaacgcctccgatacctgtgcttgacgtcgttgaggtttcacagaatgccggtgtggatgatgaactcgtcgcttcttgtgaacctctcctatcttaacctgagagtgcatgttttggatgggcaggacatggaagcacttgggaggttaccaaagctccgctacctcaagctgcatacggaatacgacgggatagtactagtcagtggcgacaagataattcccggcgatggctacttatag
More
|
||||||||||
| Protein seq | MDLVTGAIGSLLQKLGQLLKDEYDVQTGVRKKIESLSQELESVHAVLRKIGEVPPEQLDDQVRLWARDLREASYDMEDIVDDFLIMRADGPEPAAEPGLLKRLTKNVGKLFKKSKHRHKIAGAIQEINDKLQEVAARRGRYMVNDIPKPAVPATVDPRLQAMYMKASELVGMEEQMNELVKMLSLGNDIDLSSDKSMKIVSVVGFGGLGKTTLAKVVYDKFKLGFDCGAFVPVGMHPNMKKVLRDILIGLDKRMYMNSYTTSLDEKQLIDELHEILQIKRCALQGSKCRSRVLITTRIYEIARHAGGDVYKMKPLSYDESRKLLYTRILGDQSGSLPTPSAVACDIILKKCGGVPLVIITSVSLLANKPRECWSEMMISFDDLEHADMHHTPRIMCLSYYNLPLHLRPCLLYLSIFPEDYYIEKKMLIWRWVAEGFIQEKQEADIGLFEIGEGYFNELINRSLIQPVEDEYSGCVNGCRVHDIMLDIMCLLSAKENFVTIANASWEREIQRNNVRRLVLHNYWGLKESGHRLADMELKQLRTFVTNECSASDINKKLPSFQVLRVLETENRNNLITESEINLRHVGSLLHLRYLSLQKVDSSSLPEDVGNLKLLLVLDVQYSNIRDLPESVGQMTKLLCLRVDFDARVSPSAIGKLTSLQELRMKPRMDDRWHLYLDGLANGTSSLLESLCNLHKLLNVEIEGHFYQRVGVAWESGFASPQRLRYLCLTSLRFHRMPVWMMNSSLLVNLSYLNLRVHVLDGQDMEALGRLPKLRYLKLHTEYDGIVLVSGDKIIPGDGYL |
||||||||||
| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0004490 | OsLima_08g0004490.02 | Chr08 | 3817891 | 3819031 | - | NAM | ||
| CDS seq | atgtgtgtcctgttttatcagaatgctgtcatgccaaatctcaaagttctcgagttcagtgtctatgtgcgaatcctacctggttttggaaagctgcttagctttgcccatctcggaacaaattcactccaaagagtccaagttagaatcaactgtcgtgggggccgtcccgcggaagtcgagcaagtggaggcggcgttagcacacgccgccaccgtccatccaaaccgtcttacccttcataccacgaggctttgggaggacgagatgctctccccttacgaagagttacttctggctccaataattgtttttcattattattccatcaggctacttgattggcttggcttacacattccatcttattatctctttcacagcatataTAgcggcttatttcctaaagtagttgttgaaaatgtcaatgtgcggaagaggaaaagcgctcatcttcgctctgacatctgttggatgctcaagcgtaatccatgcgtcaagaaattcagtgtctccatcaattgtgcgaatgcaagtctggaggaggtcgagaaagcagaggcggatgtgagattcgcagtggacgtccatgccaaccgtccgacacttaaactgacgagatacggtgaagatatgatgactaaagtggtggcacggaaggaatcctgcctgtctgatcagaacaggaagccgctgcagatcgatgctgccatcgtgagaatcatgacgcacagaagagtgatcgatcataacagcatcatgtatgacactcaccttgagttcatgactagttga
More
|
|||||||
| Protein seq | MCVLFYQNAVMPNLKVLEFSVYVRILPGFGKLLSFAHLGTNSLQRVQVRINCRGGRPAEVEQVEAALAHAATVHPNRLTLHTTRLWEDEMLSPYEELLLAPIIVFHYYSIRLLDWLGLHIPSYYLFHSIYSGLFPKVVVENVNVRKRKSAHLRSDICWMLKRNPCVKKFSVSINCANASLEEVEKAEADVRFAVDVHANRPTLKLTRYGEDMMTKVVARKESCLSDQNRKPLQIDAAIVRIMTHRRVIDHNSIMYDTHLEFMTS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0004490 | OsLima_08g0004490.01 | Chr08 | 3819040 | 3824145 | - | NAM | ||
| CDS seq | atggatctggtgacgggcgcgatcggcagcctgctccagaagctgggtcagcttctcaaggacgagtatgacgtgcagacgggcgtgaggaagaagatcgagtctctctcgcaggagctggagagcgtgcacgccgtcctccgcaagattggcgaggtgccgccggagcagctcgacgatcaggtccggctatgggcgcgcgacctcagggaggcgtcctacgacatggaggacatcgtcgacgacttcctcatcatgcgcgccgacggcccggaacccgccgctgaaccggGcttgctgaagcgcctcaccaagaatgtcggtaagctgttcaagaagagcaagcatcgtcacaagatcgctggagctatccaggaaatcaacgataagctccaggaggtggctgcaaggcgtggcaggtacatggtcaacgatatccccaagcctgcagttccagcaaccgttgatcctcgactgcaggctatgtatatgaaggcatcagagcttgttggcatggaagagcaaatgaacgaactggtaaagatgctttcccttgggaatgatattgatctgtcgtctgataagagcatgaagatagtttctgttgtcggatttggaggacttggcaaaaccacacttgccaaagtagtctatgataagtttaagctgggattcgactgtggggcttttgttccagttggtatgcatcctaacatgaagaaAgtccttagggatattctcattggccttgacaagcgaatgtatatgaattcatatacgacatcgttggatgaaaagcaactcatcgatgaactccatgaaatcctccagataaagagatgtgctctacaaggcagtaaatgcagaagtagagtactcataactactcgtatttatgaaattgccagacatgccggtggtgacgtttacaagatgaaaccgctttcttatgatgagtcaagaaagttactatatacaagaatacttggtgatcaaagtgggtctctccctactccatcagctgtggcatgtgacataattctgaaaaaATgtggcggtgtgccgttagttatcattacatcagttagtttattagccaacaaaccacgtgagtgctggtccgaaatgatgatatcgtttgatgatcttgagcacgcagacatgcatcatactccaaggataatgtgtttgagctactacaatttgcctttgcatctgaggccttgtttattatatctaagcatatttccagaagattattacattgagaaaaaaatgttaatatggaggtgggtagctgagggtttcatacaggagaaacaagaagctgacatagggttatttgaaattggggagggatacttcaacgagctgataaacagaagtctgatccagccagtggaggatgaatactcaggttgtGTaaatggttgccgtgttcacgatatcatgcttgatataatgtgcttattgtcagctaaagagaactttgtcactatagcgaatgccagttgggaacgtgaaattcaaaggaacaatgttcgcagactagttctgcataattattggggtttaaaagagagtgggcatcggctggctgatatggagttgaagcaactaaggacctttgttacgaatgagtgctctgcctctgatattaacaagaaattaccaagcttccaggttctccgtgtgttagaaacagaaaatcgtaataatttgatcacagaaagtgaaattaatctgcggcatgttggaagtttacttcaccttagatacctcagtctacaaaaagttgattctagttcgctcccagaggatgtcgggaatttgaagttgctactagtacttgatgtgcagtattctaatatacgagatctgccggaatcagtaggccagatgacgaaactgctgtgcctgcgtgttgattttgatgcaagggtgtcgcctagtgcgatcgggaagctgacatccctgcaggagctgaggatgaagcctcgtatggatgataggtggcatctctatctggatgggcttgccaatggaacatcatcattgctggagtccctatgcaatctgcacaagcttctcaacgtggagattgagggccacttttaccaaagagtgggcgtcgcgtgggaatcaggattcgcttcccctcaacgcctccgatacctgtgcttgacgtcgttgaggtttcacagaatgccggtgtggatgatgaactcgtcgcttcttgtgaacctctcctatcttaacctgagagtgcatgttttggatgggcaggacatggaagcacttgggaggttaccaaagctccgctacctcaagctgcatacggaatacgacgggatagtactagtcagtggcgacaagataattcccggcgatggctacttatag
More
|
|||||||
| Protein seq | MDLVTGAIGSLLQKLGQLLKDEYDVQTGVRKKIESLSQELESVHAVLRKIGEVPPEQLDDQVRLWARDLREASYDMEDIVDDFLIMRADGPEPAAEPGLLKRLTKNVGKLFKKSKHRHKIAGAIQEINDKLQEVAARRGRYMVNDIPKPAVPATVDPRLQAMYMKASELVGMEEQMNELVKMLSLGNDIDLSSDKSMKIVSVVGFGGLGKTTLAKVVYDKFKLGFDCGAFVPVGMHPNMKKVLRDILIGLDKRMYMNSYTTSLDEKQLIDELHEILQIKRCALQGSKCRSRVLITTRIYEIARHAGGDVYKMKPLSYDESRKLLYTRILGDQSGSLPTPSAVACDIILKKCGGVPLVIITSVSLLANKPRECWSEMMISFDDLEHADMHHTPRIMCLSYYNLPLHLRPCLLYLSIFPEDYYIEKKMLIWRWVAEGFIQEKQEADIGLFEIGEGYFNELINRSLIQPVEDEYSGCVNGCRVHDIMLDIMCLLSAKENFVTIANASWEREIQRNNVRRLVLHNYWGLKESGHRLADMELKQLRTFVTNECSASDINKKLPSFQVLRVLETENRNNLITESEINLRHVGSLLHLRYLSLQKVDSSSLPEDVGNLKLLLVLDVQYSNIRDLPESVGQMTKLLCLRVDFDARVSPSAIGKLTSLQELRMKPRMDDRWHLYLDGLANGTSSLLESLCNLHKLLNVEIEGHFYQRVGVAWESGFASPQRLRYLCLTSLRFHRMPVWMMNSSLLVNLSYLNLRVHVLDGQDMEALGRLPKLRYLKLHTEYDGIVLVSGDKIIPGDGYL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0004490 | OsLima_08g0004490.03 | Chr08 | 3817492 | 3819105 | - | IsoSeq | ||
| CDS seq | atgttgttcaagtcaagattctcacagactaaagtggtggcacggaaggaatcctgcctgtctgatcagaacaggaagccgctgcagatcgatgctgccatcgtgagaatcatgacgcacagaagagtgatcgatcataacagcatcatgtatgacactcaccttgagttcatgact |
|||||||
| Protein seq | MLFKSRFSQTKVVARKESCLSDQNRKPLQIDAAIVRIMTHRRVIDHNSIMYDTHLEFMT |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr08 | 3818585 | 3818744 | - | OsLima_08g0004490.02 | OsLima_08g0004490.02,OsLima_08g0004490.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.068836 | 1.143974 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0170100 | SBH | 1.057518 | 1.653448 | 0.850440 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g07380 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0170100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0004740 | SBH | 0.168547 | 0.000000 | 0.359327 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0004830 | RBH | 0.513704 | 10.312900 | 0.097292 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0004750 | SBH | 0.000000 | 0.000000 | 1.238678 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0004790 | SBH | 0.021650 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0004590 | SBH | 2.174781 | 4.601822 | 3.999743 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0061900 | SBH | 0.6057375 | 16.6181255 | 19.854616 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0004410 | SBH | 0.0 | 0.000000 | 0.124746 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0067300 | RBH | 1.378076 | 25.991418 | 0.0594805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0001480 | RBH | 0.936822 | 63.947994 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0004370 | RBH | 2.414437 | 29.223381 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0004660 | RBH | 0.465648 | 2.934512 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0004510 | SBH | 0.036007 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004440 | SBH | 0.118992 | 0.674142 | 0.302935 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004430 | SBH | 8.328967 | 88.944145 | 19.449026 |
