Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0000370 | OGI:08000190 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:275048-279745 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tgcgacattagtcgattccggaagaagtcgattccgacgacggagcagaagaagtcgattccggcggacggagcagaagaagtctgcggcaccttgcgaatcatctttggcataagaaggtatatcacgcacccacaaaagaacacaatcatgacatcatctaatcatgatcttgcagctaggaaataacatatgcatctatacagttttgtcatcatattttcagcagaagaaactaacattgcacctacaaaagaacacaattacgatatcctgtattagttagaggtacattatgttgcatctatgtatacaattttgtcaaatttttttccagcacAaaaaagtaaccttgcatctatcaaagaacacaattatgagagtttgtattaattagttctataaaataacataaacatgtatacgactctctgtcaaatttgtttagtaactatatgcagtactactcatttgcagataacatggcacctagcaatttgattactgcattaacaccaaagaacgataggtggagaatcaaagtaaaagttattaggctatgggatgcggttaatcctacaatggttgatgagttctatggtatacagatgattgtactagatgcagaggtatgattgttgtaaacatgtgatttaatatattgttctattatgtaaatactattttttggtgcagggcaactcaatacatgtctctatctcaaagcaattggcgaaccacttcaggccaaaaattaagattaactcaatatatacttttaaaaatttcaaagttatggaacatgataaataccgtgtcctaaaaaACaatctgaaaatccttttttatcatgataccatagtaaaagaggtaaaataaaaaagacaatgtttcttggactattacttcgagtttacagacaggaaaacattaaggagtaggttgaataaagatcaacagttatcaggtatgtgcataatcttacttcttttaaacattgttatttgtactaaagacctgtttgtatttagatgtgattggcttacttagcgggatgaagccgatcgagcaaagaatgctaggaaaaaaCacaagcagggagagggtttgcaacatgcgtgaaattgaactccttttattagagtaagattgttgtctgcaaatttaaactagcactaatactttctatgtggtatattttacatgactttattgcatttgtaggggagaaaaagttaaaattactctatggggagatattttagcaaatatggttgacgacgatttgcttgggaagcaaactgtgttcatcgccactggacttctggttaaagaatatgaaagtgaggatgttatttttttctaatttaacgtacttatagttttagtaaactaacgacattgatcatttagaattattatcatttggagtaacaagttcaacagaagTttttttggatatggaaattcctgcaagcatggaaatattgagcaggtgtgcagtagtagcatttaaattcatatatatttgttgatttgtctaaaattatctgatggattatattgcattttatttataggcataatgctgaaaaggttttgcccacaatgattgaagtggacgcaagcactcaaggaaccattgaagagcaaatgttctacaatagaaagacattgaaagaaataacagaattgcgatatagtaatatacaacagaaggtacatatccattcctatgttacgtttatttttcgtttgtgtatttaatgttgggaaaaatctacttgatggctgatgtaatgagcattacctaaattaagtggtacgtttagtcgtgaagtcatctttagtcactctttcaagctgattagttaaccaacattaatttgttttttatttaggaatttatatgcacagtcaaagctaaaattgaggagattaaatcaagaaattggtggtatatgtcttgcgataagtgcttttgtggaacaagaaaggaatcaaatgtatacatttgcaattcatgcggaaaggaagcagtgaacccaaaaccacggtaagcatgctcttcaaattttatttgacatattgtagcaggtatatttaccattaacgacacattgtaccaggtatgtaataaaccttgagataagtgaccacactactaggacgacatgtacaatatttaatgaggaagcagaaagaatatttggtcataagtctgtgtccaccatgctggaggaacaaaatggacaaattgatatgattcctgatacaatacgtcagatatgtggaagaatattgatattcagattgaagttgactaaaaggaatttagaagagtgtaaggaagactacaaagtgaactacacttttacacctaatgaaaagcttgagatgaattatgtaaatgacaaggcagaagaggtatgactatttgcattattcTtttttatacatgttatagatcttatattacaatataaatattaatttgcagtcaatgttgaagtacaacgatgattatggcttcactgatttgaaaaaaatatttttgtaatgcatatgatatatatataattatttattggatgttctgtagtttgggcagcacaattttcaggtaaaagaagagccaaaaaatgaaagtagtgatgattatgaaatgaacaatcatcgcaaaacaaagaaagagagatcaaacatgagatctacaaaaagatcaaacaaggtatgtataattgctttcttacataacaattcgtaaagttgtttatagtagtacactaataatgatgttttataggaaccatacattaccgattctgatgggaaaacaaatgaaaaggcaatcacaatcgatgatgattccgaagaatcacttgatgattattttgatgaagaatacaataaaaaggttacccaggagagtacgaagacaaatccttctaaaagaagagttacaagacgctttaaaatagctaacaaggtacttcatttatttactttccaaattcactcaatttagttttcacataaattatttaccatttcaatatggcactatgatataggctaagaaagatcttatattacaatataaatattaatttgcagtcaatgttgaagtgcaatgatgattatggcttcactgatttgcaaaaatcagaagatgaggtaatatataacaaataaaaaatatttttacaATatatattatatatataattatttattggatgttctgtagtttgggcagcacaattttcaggtaaaagaagagccAaaaaatgaaagtagtgatgattatgaaatgaacaatcatcgcaaaacaaagaaagagagatcaaacatgagatgtacaaaaagatcaaacaaggtatgtataattgctttcttatataacaattcgtaaagttatttatagtactacactaataatgatgttttataggaaccatacattaccgattttgatgggaaaacaaatgaaaaggcaattacaatcgatgatgattgtgaagaatcacttgatgattattttgatgaagaatacaatgaaaaggttacacaggagagtacaaagacgaatccttctaaaagaagagttacaagacgttttaaaacatctaacaaggtacttcatttattttactttccaaattcactcaatttagttttcacataaattatttaccatttcaatatggcactatgatataggctaagaaaggaaaatgttctgaaatgaaaactcagagaaataaggtacaattcttacttttctttcatatacaaaacgatttgtcaaactattactgacatgttatatacaattgatgggtattaataggaaccatatactactgattgtgagaagatagcaaatgacaaaccaatttcgcttgatgatgattttgatgaagaatataataaaaatatggtcatggtggacaccagtacttctaaaagaaaagtcagacactacataggacaaactaacattgtacttcattgagttttactttctatttaatgttacctttcatgtttgtccattaatgtcaatatgctattgtgcaggtaaggggaaaaggttgtggaaagaagagtacaaatatgggaacttgcacaaaaagtgcaattgaaaatacaattcaagatgatgaagtatttgatatatttgttaaataaatcatgtattttaacataaaacttttttaattaactaactaagaacacaaaatttaggtgcatgacggaaaaattgcttcaggaactgctaaaaccatcaaggaaatttataatttcagatagtgaggtactgcatgagacaatttatcaagttattaattaatatatattttttttgtaacaactaattttttttccataggatgagcacagcagtaatacaaaggtgactggggacagctgtaatagtagtaaggaagatataaacaaaggtcgatgcaattataatattgagaacattaaagttcacatgaatgagcagtccagtcgatgcagatcaacaaggattagaagaccacccacccgatactcatattaggtacaacatattacttctgggaaaatgttggttgctttagatttggtttgattagtaaattataataatatggtctttcgtctgcaggtaatttatcgtcaagaaggcccaaaagaaccaattaa
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| CDS seq | atgcagtactactcatttgcagataacatggcacctagcaatttgattactgcattaacaccaaagaacgataggtggagaatcaaagtaaaagttattaggctatgggatgcggttaatcctacaatggttgatgagttctatggtatacagatgattgtactagatgcagagggcaactcaatacatgtctctatctcaaagcaattggcgaaccacttcaggccaaaaattaagattaactcaatatatacttttaaaaatttcaaagttatggaacatgataaataccgtgtcctaaaaaACaatctgaaaatccttttttatcatgataccatagtaaaagagacctgtttgtatttagatgtgattggcttacttagcgggatgaagccgatcgagcaaagaatgctaggaaaaaaCacaagcagggagagggtttgcaacatgcgtgaaattgaactccttttattagagggagaaaaagttaaaattactctatggggagatattttagcaaatatggttgacgacgatttgcttgggaagcaaactgtgttcatcgccactggacttctggttaaagaatatgaaaaattattatcatttggagtaacaagttcaacagaagTttttttggatatggaaattcctgcaagcatggaaatattgagcaggcataatgctgaaaaggttttgcccacaatgattgaagtggacgcaagcactcaaggaaccattgaagagcaaatgttctacaatagaaagacattgaaagaaataacagaattgcgatatagtaatatacaacagaaggaatttatatgcacagtcaaagctaaaattgaggagattaaatcaagaaattggtggtatatgtcttgcgataagtgcttttgtggaacaagaaaggaatcaaatgtatacatttgcaattcatgcggaaaggaagcagtgaacccaaaaccacggtatgtaataaaccttgagataagtgaccacactactaggacgacatgtacaatatttaatgaggaagcagaaagaatatttggtcataagtctgtgtccaccatgctggaggaacaaaatggacaaattgatatgattcctgatacaatacgtcagatatgtggaagaatattgatattcagattgaagttgactaaaaggaatttagaagagtgtaaggaagactacaaagtgaactacacttttacacctaatgaaaagcttgagatgaattatgtaaatgacaaggcagaagagtttgggcagcacaattttcaggtaaaagaagagccaaaaaatgaaagtagtgatgattatgaaatgaacaatcatcgcaaaacaaagaaagagagatcaaacatgagatctacaaaaagatcaaacaaggaaccatacattaccgattctgatgggaaaacaaatgaaaaggcaatcacaatcgatgatgattccgaagaatcacttgatgattattttgatgaagaatacaataaaaaggttacccaggagagtacgaagacaaatccttctaaaagaagagttacaagacgctttaaaatagctaacaagtcaatgttgaagtgcaatgatgattatggcttcactgatttgcaaaaatcagaagatgagtttgggcagcacaattttcaggtaaaagaagagccAaaaaatgaaagtagtgatgattatgaaatgaacaatcatcgcaaaacaaagaaagagagatcaaacatgagatgtacaaaaagatcaaacaaggaaccatacattaccgattttgatgggaaaacaaatgaaaaggcaattacaatcgatgatgattgtgaagaatcacttgatgattattttgatgaagaatacaatgaaaaggttacacaggagagtacaaagacgaatccttctaaaagaagagttacaagacgttttaaaacatctaacaaggctaagaaaggaaaatgttctgaaatgaaaactcagagaaataaggaaccatatactactgattgtgagaagatagcaaatgacaaaccaatttcgcttgatgatgattttgatgaagaatataataaaaatatggtaaggggaaaaggttgtggaaagaagagtacaaatatgggaacttgcacaaaaagtgcaattgaaaatacaattcaagatgatgaaaacacaaaatttaggtgcatgacggaaaaattgcttcaggaactgctaaaaccatcaaggaaatttataatttcagatagtgaggatgagcacagcagtaatacaaaggtgactggggacagctgtaatagtagtaaggaagatataaacaaaggtcgatgcaattataatattgagaacattaaagttcacatgaatgagcagtccagtaatttatcgtcaagaaggcccaaaagaaccaattaa
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| Protein seq | MQYYSFADNMAPSNLITALTPKNDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQLANHFRPKIKINSIYTFKNFKVMEHDKYRVLKNNLKILFYHDTIVKETCLYLDVIGLLSGMKPIEQRMLGKNTSRERVCNMREIELLLLEGEKVKITLWGDILANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTSSTEVFLDMEIPASMEILSRHNAEKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQKEFICTVKAKIEEIKSRNWWYMSCDKCFCGTRKESNVYICNSCGKEAVNPKPRYVINLEISDHTTRTTCTIFNEEAERIFGHKSVSTMLEEQNGQIDMIPDTIRQICGRILIFRLKLTKRNLEECKEDYKVNYTFTPNEKLEMNYVNDKAEEFGQHNFQVKEEPKNESSDDYEMNNHRKTKKERSNMRSTKRSNKEPYITDSDGKTNEKAITIDDDSEESLDDYFDEEYNKKVTQESTKTNPSKRRVTRRFKIANKSMLKCNDDYGFTDLQKSEDEFGQHNFQVKEEPKNESSDDYEMNNHRKTKKERSNMRCTKRSNKEPYITDFDGKTNEKAITIDDDCEESLDDYFDEEYNEKVTQESTKTNPSKRRVTRRFKTSNKAKKGKCSEMKTQRNKEPYTTDCEKIANDKPISLDDDFDEEYNKNMVRGKGCGKKSTNMGTCTKSAIENTIQDDENTKFRCMTEKLLQELLKPSRKFIISDSEDEHSSNTKVTGDSCNSSKEDINKGRCNYNIENIKVHMNEQSSNLSSRRPKRTN |
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| Function | Replication protein A 70 kDa DNA-binding subunit C [UniProtKB/Swiss-Prot:Q65XV7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0000370 | OsLima_08g0000370.01 | Chr08 | 275048 | 279745 | + | NAM | ||
| CDS seq | atgcagtactactcatttgcagataacatggcacctagcaatttgattactgcattaacaccaaagaacgataggtggagaatcaaagtaaaagttattaggctatgggatgcggttaatcctacaatggttgatgagttctatggtatacagatgattgtactagatgcagagggcaactcaatacatgtctctatctcaaagcaattggcgaaccacttcaggccaaaaattaagattaactcaatatatacttttaaaaatttcaaagttatggaacatgataaataccgtgtcctaaaaaACaatctgaaaatccttttttatcatgataccatagtaaaagagacctgtttgtatttagatgtgattggcttacttagcgggatgaagccgatcgagcaaagaatgctaggaaaaaaCacaagcagggagagggtttgcaacatgcgtgaaattgaactccttttattagagggagaaaaagttaaaattactctatggggagatattttagcaaatatggttgacgacgatttgcttgggaagcaaactgtgttcatcgccactggacttctggttaaagaatatgaaaaattattatcatttggagtaacaagttcaacagaagTttttttggatatggaaattcctgcaagcatggaaatattgagcaggcataatgctgaaaaggttttgcccacaatgattgaagtggacgcaagcactcaaggaaccattgaagagcaaatgttctacaatagaaagacattgaaagaaataacagaattgcgatatagtaatatacaacagaaggaatttatatgcacagtcaaagctaaaattgaggagattaaatcaagaaattggtggtatatgtcttgcgataagtgcttttgtggaacaagaaaggaatcaaatgtatacatttgcaattcatgcggaaaggaagcagtgaacccaaaaccacggtatgtaataaaccttgagataagtgaccacactactaggacgacatgtacaatatttaatgaggaagcagaaagaatatttggtcataagtctgtgtccaccatgctggaggaacaaaatggacaaattgatatgattcctgatacaatacgtcagatatgtggaagaatattgatattcagattgaagttgactaaaaggaatttagaagagtgtaaggaagactacaaagtgaactacacttttacacctaatgaaaagcttgagatgaattatgtaaatgacaaggcagaagagtttgggcagcacaattttcaggtaaaagaagagccaaaaaatgaaagtagtgatgattatgaaatgaacaatcatcgcaaaacaaagaaagagagatcaaacatgagatctacaaaaagatcaaacaaggaaccatacattaccgattctgatgggaaaacaaatgaaaaggcaatcacaatcgatgatgattccgaagaatcacttgatgattattttgatgaagaatacaataaaaaggttacccaggagagtacgaagacaaatccttctaaaagaagagttacaagacgctttaaaatagctaacaagtcaatgttgaagtgcaatgatgattatggcttcactgatttgcaaaaatcagaagatgagtttgggcagcacaattttcaggtaaaagaagagccAaaaaatgaaagtagtgatgattatgaaatgaacaatcatcgcaaaacaaagaaagagagatcaaacatgagatgtacaaaaagatcaaacaaggaaccatacattaccgattttgatgggaaaacaaatgaaaaggcaattacaatcgatgatgattgtgaagaatcacttgatgattattttgatgaagaatacaatgaaaaggttacacaggagagtacaaagacgaatccttctaaaagaagagttacaagacgttttaaaacatctaacaaggctaagaaaggaaaatgttctgaaatgaaaactcagagaaataaggaaccatatactactgattgtgagaagatagcaaatgacaaaccaatttcgcttgatgatgattttgatgaagaatataataaaaatatggtaaggggaaaaggttgtggaaagaagagtacaaatatgggaacttgcacaaaaagtgcaattgaaaatacaattcaagatgatgaaaacacaaaatttaggtgcatgacggaaaaattgcttcaggaactgctaaaaccatcaaggaaatttataatttcagatagtgaggatgagcacagcagtaatacaaaggtgactggggacagctgtaatagtagtaaggaagatataaacaaaggtcgatgcaattataatattgagaacattaaagttcacatgaatgagcagtccagtaatttatcgtcaagaaggcccaaaagaaccaattaa
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| Protein seq | MQYYSFADNMAPSNLITALTPKNDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQLANHFRPKIKINSIYTFKNFKVMEHDKYRVLKNNLKILFYHDTIVKETCLYLDVIGLLSGMKPIEQRMLGKNTSRERVCNMREIELLLLEGEKVKITLWGDILANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTSSTEVFLDMEIPASMEILSRHNAEKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQKEFICTVKAKIEEIKSRNWWYMSCDKCFCGTRKESNVYICNSCGKEAVNPKPRYVINLEISDHTTRTTCTIFNEEAERIFGHKSVSTMLEEQNGQIDMIPDTIRQICGRILIFRLKLTKRNLEECKEDYKVNYTFTPNEKLEMNYVNDKAEEFGQHNFQVKEEPKNESSDDYEMNNHRKTKKERSNMRSTKRSNKEPYITDSDGKTNEKAITIDDDSEESLDDYFDEEYNKKVTQESTKTNPSKRRVTRRFKIANKSMLKCNDDYGFTDLQKSEDEFGQHNFQVKEEPKNESSDDYEMNNHRKTKKERSNMRCTKRSNKEPYITDFDGKTNEKAITIDDDCEESLDDYFDEEYNEKVTQESTKTNPSKRRVTRRFKTSNKAKKGKCSEMKTQRNKEPYTTDCEKIANDKPISLDDDFDEEYNKNMVRGKGCGKKSTNMGTCTKSAIENTIQDDENTKFRCMTEKLLQELLKPSRKFIISDSEDEHSSNTKVTGDSCNSSKEDINKGRCNYNIENIKVHMNEQSSNLSSRRPKRTN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0629900 | SBH | 0.0 | 0.0 | 0.031399 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41180 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0629900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0001500 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0001510 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0022350 | SBH | 3.257127 | 5.224382 | 24.555346 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022760 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0005420 | SBH | 6.027192 | 10.852235 | 16.666893 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0003300 | RBH | 0 | 0.0111955 | 0.0050185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0017770 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0003300 | RBH | 0 | 0.0051065 | 0.0034985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022130 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0004990 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013290 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0018510 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0004670 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004590 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004540 | RBH | 0.0 | 0.0 | 0.000000 |
