Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0025540 | OGI:07060020 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:28253295-28260935 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgctgatgctttcatcaaaacatggtgatgattttttctcggtgtctttacctgtagtcattgtcggtatggcacagttagttgcaactggcatgatgttgtctccaacagctctgaaactactatgcaatccgcttcgccgtgccatttcgctctggagcccattatttgcaatcctattgctgggtgcgtgtatacgagtacaacgagatcatggttccaaaaacacaaagaccagccggacattattgtacttgtacctagtactatgtttctttgtcctcttaccaacaatcagcaggctccggttcccgtgtatagtaaaactagttggcaatgttctaggcagaaaactgttaccttggcgtcaaagtcattctaaacatgtgtatgcttgcagcgatagtgatgctggtattcactttcagtgacgagctaccaggacgacttgtgataatcgtatacgacgtttctgctttactgttgctgtcatttggcaacttccagattccagcagctgctgtgcgtgtcgtcctcgcatcgttaggcctacataaaaagaacggagaaaatagcgagaaaaacctcaaggcatctctaatcatattctatgggatggtactggggcaagggatactttacattgtagcatgcttgctggaggtattttcattcatccctcggaaatacctcatccgccatggcggattgggaggtcagatgggagtggaatatgtgaatttgtactatgcatatgcctttgagaaatgcatgggaggggctgtgcttgctccaaagaagatcagcctcatcacatttgccatggattccctcaactcagactcatccaggaagaagctctatggggttcagatgctgcataaatttcaaaaaaaggagcagttaaggaccaaaacaatcacaaaactcaccaatgacaccaggacagtagtctcattgttcgatatgctggactggacaagcaatggggatgaagaaatcagattattcgctgcaaaggtcactgccgagcttgctggtagcctccgagttgttcaaatcccaggggcaacgcagcttgtagcctcacttctggacactgatcaccaacagacaacaagggatcattttctgttcattgatagccaagtgggaagagaagactcaccaattcagcaagatggcatgggccaacagaactccccagtacttaagtacttgaaacagatggtaatatattgtttgataccggtggacgagccatctaacgtggatgaacaaaactcttgtatggtcagatgctggaagcagatcacaaaatgctggtcagttccagaggaggagccatccacggaccaagatttcctcccagtacaaggactgatcattcttgagaggcttgctaactttgatcttcgaaactgcatggaaatcagcagaacaggcctcatctcaaagatgatagattttacaagctacagaaatcatatgataagtactaatgaagcccaccaaataatgctcgcaagtttgtcacttagggttctgagaagacttgcaagtactgaagggaagttaggtgtaactctacgacaacagattttggaccataccttcatattgagcaaccttgcagagatcatggatgacaatgggagaagccatgaactgaagcagctggcagcagaaatcctgaaaaaccttgccatggatagaaacactagtgaggacatcgggcacatccgagtgatcatcagcagtttgatgcgtgcatttctcagccaagatccatcctcaagtacaaattctaatcacttgctatggaaaaatgttggtaggatcactaatgaactacactcaatagtctagctgaaactgaaaatgagctgaaaagcttacttaactcaagagggatacatgttcttttataggattttaagtcggtgctacagtacgctacagtaaccaacatactgtttatcttgctgtttacagctaaagtaaaatcaaactttactactactaccagctattaagcagctgtatattcttactagctaaggaacctgcagcagcaaggattatgctaacaattctccccctaatcctttcacatcagacttggattgatttggaccattccaatcctagctcgcagttcatggaatttcacccgccataatgccttcgttagaatgtcagcgagctggtccatggtgctgatgaagctggcgctgatgcttccttcctccaagcagcctctgatgaagtgatagcgcaaatcaatatgcttgctgcgctcatggaagacagggttctttgccagcgccaaggcggatttgctgtccacctttagctcgatcgctttaggttgcttcccaaggagttcaccgagcaatcgagccaaccagattccttgtgtggcagcattggtggctgctacatattctgcttcacaggaagatagagccaccactctctgcttgatggattgccaactcaccaagcttgaaccaaggaaaaacaacatgccacttgtgcttctccttgtatcaatgttgccggcgaggtcgctgtcgctgtaaccaatcagccgctgctcctctttttcccttttctaatgaagaccgtactccatcgtgccagcgacatagcgtagaatgcgtttcacggccaccatgtgctcctcagttggcctctccatgaagcgactcacgaacccaacagcaaatgccaggtctggcagtgtgtgcacaagatagcgaaggctaccaaccaaccgtcgatattctgttgcatcaacggaaggtgccgtgctatcacggctcagcttgagcctttcttccattggagtggcgcaaggattgcagtccttgaggccggctgactccacaatgcgctgagcatagcgcccctggttcagggagattccatcttctccttgcttcacctcaattccaaggtagaaagagagcaatccaagatcactcatctgaaacttcgccttcatttcttccttgaattgttcaattgctcttgtcgatggcccggtgatcactaggtcatctacataaacaccgatgagcatagcagagctgccattgttgtgtcgatacatggcgtgctcatgcttattctggtcgaagccgagctctttcagagtacgatcaagcttcgcattccaggctcttggtgcctgctgcaggccataaagagccttgcgcaggcggagaaccttgtcttcttctccggcgacgacaaaaccggggggctgtttcacatacacctcctctgccaaatctccattgagaaaggcagacttcacatccatgtgatggacgcgccatccttttgggtggcgagcgcaagcagaagacgaattgactccatgcacgcgacgggcgcaaatacctcgtcgaaatcaatcccaggttgttggacaaatcccctagcgacgagacgagctttgtgcttgactaccttcccggcctcattcttcttcaatttatagacccatttgagtccaattgggcagtggccatgtgggagatcaacaagctcccaagtcccattgcgattcaccgcgtccatctcttcttgcatcgcggcccgccatgcctcgtcatgctcagcttctgctaacgagcacggttcaccaggcccagcgaagagcaaagacgcctcctcgagctcctgctgtgcaagccctggtgccggggcattctccccgatcaagttgtcgatggtgcggtagcggacaggggtgttggagtgcgccgcgtcgatcctctcctcgtcgtgtgagggaggtgacacgaattctgttggggcagcgctaggacttggtgctggtgtggcaggggttgctggtgaggtctcctgcagtggcgttggggacgttgaaggggtcaccgcgcctccccccaaaccaggcataggatgcgtcttctcaacatggtactcgatggcgaaatcgttgctcggtcgagcacatgtgctgcttgctaccgtccagtcccacccgcggctctcatcaaagatgacatcacgggcgagacgaacgccaggcacccgaaggtgcgtaggaagctgaccatcggcttcttgccatgccaagcttcatatggcgttttgccagtgaggctcttggttggtgcgcgattgaggaggaagacagccgtgctgacagcctccccccaaaactccacaggcattcccctctgtttgagaagggcgcgcgccatgggcaccactgtctgattctgccgctcgaccacgccattttgttgtggggcgtagggcgcagagaaatgacgctggataccctcatcagtgcagtaggcggcgaactcaagcgacgtgaactcgccaccgttgtctgtgcgaaatacacgcggcttgcgtccacagtgagtctcggctgccacctgaatcttcttgatggcgtcaggtgcattgctcttggctgctaggagcgccacccacatgtatcgtgtggcgtcgtcgaccagcagcaagaagtgacgccggccacctggtgttgccggcgtgatgggaccacagatgtcgccatggacgagatctagcggctcctgagcgcggtacttggctacctttggaaaggcagcgcgccgatgcttggtgatgacacacgtgtcgcaaagctgctcaacatgctctagtcgaggcaggccgcgcacgagctcttgtcggcccatcttctctagcgagccgaagtggatgtgcccgaagcactcgtgccagcgccaggcaacatcatcgtgtcgggtagccaagcaaattggcctagcaacctcgagacggaggacatacagacggtttcgtccccgcttgatcttggcgaggagacggcggcggcggtcccagatgcgcatgatgccgtcctcaaccagcacacgcgtcccgctttcatcaagctgaccgatgctgatgatcgagctgttgaggcgtggaatgtagtagacgccgctgagaaccttgtgctcgccattcttgccggtgaagatgacgttaccggcacccttgatgtcaacgatggagctatcgccaaatttgacagtgccggtgacgcttcggtctagctcagcaaagacgtcaccacggcccgtcatgtggttggtggctccagtgtcaaggtaccatgcttcctccttgtcctcagcgtccgtggctcccaggctcacctgcactcgcggttcaacgagggagacaagagatggcacgatgatggggtcatcattgagctcgtaggcgtgggccatcaacaaagtggcatcatcatcttcaagctcgcaggcccgtgaaagcagcaggacgtcgtcatcgtcatcaccttgggctaggtgagcagcttatttcttgggctggcgacagtccttggcccaatggccaagacggccacaattgtggcatctttttggtgccttgtccctattatcgttccctttctcgcctcctatgctgccaccaaagcctcttttcttgcggtgggagtgaggtcgctgacgagctccgccttgcgactgcttggaggatcccttctgtcgctccttctgccgtgcgagccactgctcctccgtgaggagctggcctccggctggactagtcgatgacgttggagctggtcgccgttcctccgccaccttgagatgcccagtgacgtcctcgatggtgagtgtcgagagatccaacagggtctcaatcgacacagcgatttgggaaaatcgctttggaacgacgcgcaggaacttctcgatgatgttctgctcctcgattcgttctcctaatgtcccaagctgagacactaggcttgtgagccatagggcgaagtcgtcgatcgattcaccatcatggaacaagatggattcatactcccggcgcagctgttgcgccttcgtcttcctcacgcggtccacaccgacgcgcatcactttgatggcatcccaggcgtccttcgtggagtccttcgtggcgagcagcaggatcatctcgctagggacagcgcgcaggatggcctccattgccatcctgtcctcttgctcatcgcagtcaccgtactctaccgcgtcccaaaggccacgggcttgcagcatcaccttcatcagcagcgaccactcggtgtagttggttcgcgtgagggtggggaaagcagcagcgccgccaacctctctgacagtccgttgcacaacaacctctcgaacatcagcgcctagaactcgtcctcgccgtggtgttggcgataacgagtgatggcggcctcggtgttgtggccacctggaagcattggctccagcagctggtactccctccatctctctctcacacttctttcaacctgagctctgataccaattgttggtaggatcactaatgaactacactcaatagtctagctgaaactgaaactgaaaatgagctgaaaagcttacttaactcaagaggggtacatgcccttttataggattttaagtcggtgctacagtacgctacagtacccaacatactgtttatcttgttgtttacagctaaagtaaaatcaaactttactactactaccagctattaagcagctgtatattcttactagctaaggaacctgcagcagcaaggattatgctaacaaaaaatgccggtcacgcactggcaatgctggcaatggaaagtagagataactgtttggttatgttaatggaacaagggtatgtgttcattagacaacttacaactatgatgcatgatgacaggttcaaatgtatagcagcaagcctgttgtggaatatgtgcgagcatgctcaatccgagctcagcaactcagacctgaaggaattgtcttacatcttacgagaggtgagctgcaaattcttctgtctttttttgatagactagagatagaaaaactgctaatgtaagtgtcaattgcaatactggactactggaggtgggtagtgtaatttctattttcatgtacttgctatctatattttttcataaattgttagggagaaccgacctgcagtttccacattgtttttcaaatattgacaagcatacacatctgtgctcttaatattgatagcattgtaagctcatgtcgtgaaattgactaatttgaacccagcaatgtgcaaaaactattgtacattggacaactaagtatactatcggaaacatccttggcaaccaaactaaataggagatgatgtagctgaattttgttgaataatgttttaactaatcatggttttgttggctgacatggcgtcgctatatgcactatacaggtgctggaaggaataatggatgcagaaggagcagaactcgaggtccttattggccttagttcacaaatatgtcaagtcattcctgaagactttgcccgagaagtagagcatggtcaaattatggaaaaattcgtaaagaggcttgttgatgtgcttaatgcacatatgagacccagtgtccattgtcctggcatcaggagggtgattgttcaacatgccatatacttgatggagttcaattctcgctatgcaaatgatttccacaaatgctggatggtggaagcactatcaatgatagaacgtacaccctcgaggtctgaaaactacaggttggtttaa
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| CDS seq | atgctgatgctttcatcaaaacatggtgatgattttttctcggtgtctttacctgtagtcattgtcgcgatagtgatgctggtattcactttcagtgacgagctaccaggacgacttgtgataatcgtatacgacgtttctgctttactgttgctgtcatttggcaacttccagattccagcagctgctgtgcgtgtcgtcctcgcatcgttaggcctacataaaaagaacggagaaaatagcgagaaaaacctcaaggcatctctaatcatattctatgggatggtactggggcaagggatactttacattgtagcatgcttgctggaggtattttcattcatccctcggaaatacctcatccgccatggcggattgggaggtcagatgggagtggaatatgtgaatttgtactatgcatatgcctttgagaaatgcatgggaggggctgtgcttgctccaaagaagatcagcctcatcacatttgccatggattccctcaactcagactcatccaggaagaagctctatggggttcagatgctgcataaatttcaaaaaaaggagcagttaaggaccaaaacaatcacaaaactcaccaatgacaccaggacagtagtctcattgttcgatatgctggactggacaagcaatggggatgaagaaatcagattattcgctgcaaaggtcactgccgagcttgctggtagcctccgagttgttcaaatcccaggggcaacgcagcttgtagcctcacttctggacactgatcaccaacagacaacaagggatcattttctgttcattgatagccaagtgggaagagaagactcaccaattcagcaagatggcatgggccaacagaactccccagtacttaagtacttgaaacagatggtaatatattgtttgataccggtggacgagccatctaacgtggatgaacaaaactcttgtatggtcagatgctggaagcagatcacaaaatgctggtcagttccagaggaggagccatccacggaccaagatttcctcccagtacaaggactgatcattcttgagaggcttgctaactttgatcttcgaaactgcatggaaatcagcagaacaggcctcatctcaaagatgatagattttacaagctacagaaatcatatgataagtactaatgaagcccaccaaataatgctcgcaagtttgtcacttagggttctgagaagacttgcaagtactgaagggaagttaggtgtaactctacgacaacagattttggaccataccttcatattgagcaaccttgcagagatcatggatgacaatgggagaagccatgaactgaagcagctggcagcagaaatcctgaaaaaccttgccatggatagaaacactacaagcctgttgtggaatatgtgcgagcatgctcaatccgagctcagcaactcagacctgaaggaattgtcttacatcttacgagagactagagatagaaaaactgctaatgtaagtgtcaattgcaatactggactactggagggagaaccgacctgcagtttccacattgtttttcaaatattgacaagcatacacatctgtgctcttaatattgatagcattgtgctggaaggaataatggatgcagaaggagcagaactcgaggtccttattggccttagttcacaaatatgtcaagtcattcctgaagactttgcccgagaagtagagcatggtcaaattatggaaaaattcgtaaagaggcttgttgatgtgcttaatgcacatatgagacccagtgtccattgtcctggcatcaggagggtgattgttcaacatgccatatacttgatggagttcaattctcgctatgcaaatgatttccacaaatgctggatggtggaagcactatcaatgatagaacgtacaccctcgaggtctgaaaactacaggttggtttaa
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| Protein seq | MLMLSSKHGDDFFSVSLPVVIVAIVMLVFTFSDELPGRLVIIVYDVSALLLLSFGNFQIPAAAVRVVLASLGLHKKNGENSEKNLKASLIIFYGMVLGQGILYIVACLLEVFSFIPRKYLIRHGGLGGQMGVEYVNLYYAYAFEKCMGGAVLAPKKISLITFAMDSLNSDSSRKKLYGVQMLHKFQKKEQLRTKTITKLTNDTRTVVSLFDMLDWTSNGDEEIRLFAAKVTAELAGSLRVVQIPGATQLVASLLDTDHQQTTRDHFLFIDSQVGREDSPIQQDGMGQQNSPVLKYLKQMVIYCLIPVDEPSNVDEQNSCMVRCWKQITKCWSVPEEEPSTDQDFLPVQGLIILERLANFDLRNCMEISRTGLISKMIDFTSYRNHMISTNEAHQIMLASLSLRVLRRLASTEGKLGVTLRQQILDHTFILSNLAEIMDDNGRSHELKQLAAEILKNLAMDRNTTSLLWNMCEHAQSELSNSDLKELSYILRETRDRKTANVSVNCNTGLLEGEPTCSFHIVFQILTSIHICALNIDSIVLEGIMDAEGAELEVLIGLSSQICQVIPEDFAREVEHGQIMEKFVKRLVDVLNAHMRPSVHCPGIRRVIVQHAIYLMEFNSRYANDFHKCWMVEALSMIERTPSRSENYRLV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0025540 | OsLima_07g0025540.01 | Chr07 | 28253295 | 28260935 | + | NAM | ||
| CDS seq | atgctgatgctttcatcaaaacatggtgatgattttttctcggtgtctttacctgtagtcattgtcgcgatagtgatgctggtattcactttcagtgacgagctaccaggacgacttgtgataatcgtatacgacgtttctgctttactgttgctgtcatttggcaacttccagattccagcagctgctgtgcgtgtcgtcctcgcatcgttaggcctacataaaaagaacggagaaaatagcgagaaaaacctcaaggcatctctaatcatattctatgggatggtactggggcaagggatactttacattgtagcatgcttgctggaggtattttcattcatccctcggaaatacctcatccgccatggcggattgggaggtcagatgggagtggaatatgtgaatttgtactatgcatatgcctttgagaaatgcatgggaggggctgtgcttgctccaaagaagatcagcctcatcacatttgccatggattccctcaactcagactcatccaggaagaagctctatggggttcagatgctgcataaatttcaaaaaaaggagcagttaaggaccaaaacaatcacaaaactcaccaatgacaccaggacagtagtctcattgttcgatatgctggactggacaagcaatggggatgaagaaatcagattattcgctgcaaaggtcactgccgagcttgctggtagcctccgagttgttcaaatcccaggggcaacgcagcttgtagcctcacttctggacactgatcaccaacagacaacaagggatcattttctgttcattgatagccaagtgggaagagaagactcaccaattcagcaagatggcatgggccaacagaactccccagtacttaagtacttgaaacagatggtaatatattgtttgataccggtggacgagccatctaacgtggatgaacaaaactcttgtatggtcagatgctggaagcagatcacaaaatgctggtcagttccagaggaggagccatccacggaccaagatttcctcccagtacaaggactgatcattcttgagaggcttgctaactttgatcttcgaaactgcatggaaatcagcagaacaggcctcatctcaaagatgatagattttacaagctacagaaatcatatgataagtactaatgaagcccaccaaataatgctcgcaagtttgtcacttagggttctgagaagacttgcaagtactgaagggaagttaggtgtaactctacgacaacagattttggaccataccttcatattgagcaaccttgcagagatcatggatgacaatgggagaagccatgaactgaagcagctggcagcagaaatcctgaaaaaccttgccatggatagaaacactacaagcctgttgtggaatatgtgcgagcatgctcaatccgagctcagcaactcagacctgaaggaattgtcttacatcttacgagagactagagatagaaaaactgctaatgtaagtgtcaattgcaatactggactactggagggagaaccgacctgcagtttccacattgtttttcaaatattgacaagcatacacatctgtgctcttaatattgatagcattgtgctggaaggaataatggatgcagaaggagcagaactcgaggtccttattggccttagttcacaaatatgtcaagtcattcctgaagactttgcccgagaagtagagcatggtcaaattatggaaaaattcgtaaagaggcttgttgatgtgcttaatgcacatatgagacccagtgtccattgtcctggcatcaggagggtgattgttcaacatgccatatacttgatggagttcaattctcgctatgcaaatgatttccacaaatgctggatggtggaagcactatcaatgatagaacgtacaccctcgaggtctgaaaactacaggttggtttaa
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| Protein seq | MLMLSSKHGDDFFSVSLPVVIVAIVMLVFTFSDELPGRLVIIVYDVSALLLLSFGNFQIPAAAVRVVLASLGLHKKNGENSEKNLKASLIIFYGMVLGQGILYIVACLLEVFSFIPRKYLIRHGGLGGQMGVEYVNLYYAYAFEKCMGGAVLAPKKISLITFAMDSLNSDSSRKKLYGVQMLHKFQKKEQLRTKTITKLTNDTRTVVSLFDMLDWTSNGDEEIRLFAAKVTAELAGSLRVVQIPGATQLVASLLDTDHQQTTRDHFLFIDSQVGREDSPIQQDGMGQQNSPVLKYLKQMVIYCLIPVDEPSNVDEQNSCMVRCWKQITKCWSVPEEEPSTDQDFLPVQGLIILERLANFDLRNCMEISRTGLISKMIDFTSYRNHMISTNEAHQIMLASLSLRVLRRLASTEGKLGVTLRQQILDHTFILSNLAEIMDDNGRSHELKQLAAEILKNLAMDRNTTSLLWNMCEHAQSELSNSDLKELSYILRETRDRKTANVSVNCNTGLLEGEPTCSFHIVFQILTSIHICALNIDSIVLEGIMDAEGAELEVLIGLSSQICQVIPEDFAREVEHGQIMEKFVKRLVDVLNAHMRPSVHCPGIRRVIVQHAIYLMEFNSRYANDFHKCWMVEALSMIERTPSRSENYRLV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0649100 | SBH | 0.0 | 0.077713 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45480 | SBH | 0.0 | 0.056248 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0649100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025670 | RBH | 0.000000 | 4.986097 | 0.110220 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025710 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025560 | SBH | 0.049186 | 0.537736 | 0.329784 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025540 | SBH | 0.0 | 0.018999 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025760 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0446900 | SBH | 0.091767 | 0.075612 | 0.1556375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026210 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0458300 | SBH | 0.0409145 | 0.049848 | 1.5721155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0018390 | SBH | 0.107891 | 0.094829 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025540 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025770 | SBH | 0.0 | 0.069202 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025440 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025410 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025470 | RBH | 0.0 | 0.0 | 0.000000 |
