Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0025340 | OGI:07074680 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:28140239-28146006 | ||||||||
| Gene Symbol | qHMS7 ORF3 | ||||||||||
| DNA seq | ctattgtttgttctctgcaatctctaccattttctgactgtcaccgatattcttcttggctttgcagttaaactgttaaaggcagtattttggtgcatacatatgtacgggataatttactatttgccactctgttaaagtctgtgatgctttagcttatgcttcgaaaaatctttgatactgccattgatttttctgtgccaacccgcaccgaagcgcagggtgcacacctggaagtataatgttagcaatagtgttaattcaagcaatttctaatcaatctagcatgtaatactatactctctccagccataaaagaagatcgattttgactattcaaagtccacaagacacaaatttgaacgctagattctccctcataagtctgaaaataggttaggtaagtgcaatgccgttattcaagcatttgctgtaataaacttggatacataatttcatatgcgaaatatacattctaaataataagtataataaagttaacattatagatctagtgagatcaaagatgtgccgttgatttttatctctttgagcgtgtgttagggccatattcatgggtgtgtaaatgtgatgttgcatggcccactctgttacagaaacagaggtatcactcgtccagaaagcaaagctgaccaagtcacctttactgagattaacgcaaaatcagtctttatttcttgagtatcatagccatggattttctccttgaaggaaacataatgctggtcgaaactggatggaaacgcgcccacttcgaacttcaaatctatgaaagaatccctcgttacagcaaccaccgacctctttaaatcacgtgactcactgatgacaccatcaaagagacggatttccttatccaagtcactggttaaacaaccgagcaacaaattgaaactgctttgcacttctgatataagaatctctacggtggcctcagctgaacaattaaaacgtgataaagttatgtcaactgcaccgtaatcgccaggaatgcaaattgtttctggccgattccataggcctccagagcctatcattgatgcaccatcaatcagctgtaggtcatctttttcttgttcacctgtcttgatcctcatgtcatattcaattagagcatagtccatcatgtctattcctcggttagggccttccatgttgatgagcgaaccctacaaaattattatatttagttgctcttcttataaaagtaagaaatatctaaaggtggatgcttccttatgttgtttcacttgtaacagcatttacttgaaaggtccttaaagttggagcgtggtgtcacttaggtccacgatcttgtaaaatcaacattaagatccatgaacttgtttaagtgaatcattgcagtccaaaaacacgtctgaccgggttgaccgtcctacgtggcagtctagcgtggctacatgtttgcaattaggcccctccacgcccgatccacagccttcatggtgttggagacgcggttcttgccgatgagcgacatgacggcctcccgcgccttggtgagcacctgcgtgagcgcctcccgaccttcgccatcatgttgcccggcgccgttgccgccttcggtgggtgtttgttgcagcagcagcggcggaggaggggggacaggggcagatgcactggggaaggagaagcaacacaagccggtgctcaagaacaccatcgccggcggcgaccacagcgggaacaatgacggcggaggtggcagggagaaacagcggcgaccgcgctggcgtgagcaacaacagcaacagcagcgaggaggatgaacgcgatgtggcggcgcagaggatgggtgatgtggactagcgcaggtaccaagaggacatcgaggacaaaaccatcgccatggattccgatcctgaggttcatatcgcgccgagtaagctcttgctccgttgatctctagctttgcatgtgccgccgctgacggtgttagatttgaaacttttttggttgtttgcgtgtgccgccgctgacggtgtcaggtttgacatggcaaggaccctagcggtgcaggagatggagcagtggagggcgacggcgcaacgtgtcaaggtgtcggctcggtgacctcggcggccccgtcttggacgtctcggcggcaccacactccacgatgcgtgtgctgcgggaaggcgaggacatcggcacgacgcctgtcgtcgactctttcgagtggaaggatgcggccacatacacaatgcctgaaggcagcgctgccgcctgtcgtgtccggcgtgacgtacaccgacaagatcaagttggcagcgacatgcaccacggagagtacagcaagaagctagccaccacaatgtacgagaaggtcgccggagtcgggaccgtcgtggactcgtggctggcaaggtgcagcaagtgacgcagtccgctggcaccgtgatctcaggcatcagcggcacctcatagtcacagggtaccgcgcaggactcggacgcctccaccacccttgcctccggcgagccagcgaccgggcagcaacaggacaagggggcgacggtcaccggctaaatcgccgacatgctccgtcggggcgatgaggaccgcgtgctcagcgaggcgatcttcggcatagtgcagtggcggaaggaggtcgtggcacagcgcgtgccggcggtggcggcagcggtgccgggcgaaacgatgatgaagatccgggaggcactcgcataggtgctcgctaaggtgcgggaggccgttacgtcggtcatcggcaagaaccacatctccgacaccgtgaaggccgtggatcgggcgtggagggcctaattgcaaatatggagccacgctggactgccacgtaggacggtcaacccagtcagacgtgttttgtactgctatgattcacttaaacaagttcatggaccttaatatcgattttacaagatcatggacctaagtgacaccacgctccaactttaaggaccggtggtgtattttactctttttacaactaccaagatcttcatcatgtatcaaacaaaagaaaaaaaaattatgtagggtactaagcaacaacaaagtgtccaaaactatttaacatgatttttctttggaatacatgtgttccttagtttcataatttaaacctgttctcatagtaaatcatcatttcataatatagagtacactccctatgtaaggtgcgttttggaaggagaaattcttgaaaagtagaattttgacctttaatttctctatcaatatatcaccaattgcaataaaattaacatcttaaaagtaattcgagtaccaataatttgacgatttttgccaaaactcatgaagtatgaattttccaaatcaaaatacacaatgatatttctagataagtcggatgtgtacctgctccacaatgatgggatcatccctgctacagttgacaatataattaagcaacggatctagatcatcccgcacagctatgtatccatacaactctactgaaccaccatccagtgtaattttagccaactccaatgataaaatttgcagcatgttgcaatgaacatgtgacatgcaagttccattactgcgaatgacacaatttgtgggattcgaaaacctcattgcctccaaccgagcttcAaaaaaagtaaagtcataatgtaagtttgtgaccggaaattaatacagtgaacaaacacttgacatttgaaaagtacatgtgatatttgatgattatatggccttattggatttttttttccttttcatctacaaagtagaaacaacctatgttctttttactaggagagcaacatctatcctagtatcaactacaagaaaaaaaaaactcaagggcagactacctcttcagaaagccaggtatattctttcctgtaccagccttttacctctacagaaaaccacgtgttttgggaagtggtctatattttggaaactggcaacccgctcctcatattaaacaggggcatttgaatgtttggttggccccttgaacacctagtagtcctttaggttatatatagtatgtgaactgcctgagtactttctattattgcttgttgttgctccctgcatgcttggaaaacttgtactattactgacagtttgtggctgcatgtatggagaatttaaacctaatggcaattacaacagtgtggatgcgatatttagattattatttgcacttatagttgtcattttcttgtgtattctgctattgaaatacatgctcaaaggctgtgtgatcaccgtgttgcaaagttcagggataaagtactttggacatttatgtaattaaatggcatggaataaggtcctagtccatgtcatcagaactctgcatgcaacctcagtccctcccatcaggctgtggcgcagattgctatgtatgcaaatggtgctaagctgaagggccagtaaaagtaaagtacaaggcttggggtggaagtgttactctcatccacgtttaaggacctccagtacaattatctcatagctgaaaagagtgtaaggcgggtaaaattatggcagtgctgcatagcaccacatatacaatgatctctaggatcgcaataaaatatttatagatatggaaagagattcgttatgttcaaggaaacaaattatctctaataaaaaataatatagcaaataaagatagagaaaagatagcttactctcattacggtctgcaatatgaaactcccttttccacggtgtgtccatgatgtccctatatatagagccatcacggtgtctactttttggaagtatgttgttcacagtatattcttcaggatcaagaacttcgtcctcctcaacatgttcctccgtttcactccttcgatcatcctcatcacagccatcctgcttcgcactttgccccagtacatcgtatttgatgtatgaaacctctgaggacgccgcatctctattacttttctcatctccagctctagcctccaagattgtgcccctggtgtcaatggttttcataccttgagtgatcgcagtatgcttcttttcctgggatggaagtcgcctgtatgactcgtcgccttttactcgactgatggtggtcatgttccgaggttcccaaggaaatctatcattaattaagagaatgaaaaaccaatatcaacaactaaaataaataagacggtaccatcagtcaggattgagatcatctaaccctgaaatcgataatcgatttctaaattttttttctcgatctcctttgtctttgtttcgaattagtttaaagaaacttattttccacaactaccttcaaacaaatgaaaacaaaacccaaagttttttttttttgcgaggaaaacaaaacccaaagttgatcgcagatccaaaaactgtggcaaaagacgcaaactttagcatcagaacaaggaaaaaaaacacatgcccaaaaaatctgtctatgaaaatcatgccaaaactgtagtaataaccaagtaaaggcgcagactttagcatcgatcagcacaagaaaacacaccgggaaacacgacggacgacaggtcctcctcgagcaagcaatggtgaccaccagcaccggctagccgctgcagatgccatgagagagggagaagagatgaggcggtgcatcggggcaggagatcgggcggcggcgttagagcgtcggagcagacgcggaaagcggcggagaattcgcatctgggcggcggcgggggttagggggaatagccgtgctgtggctgcgt
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| CDS seq | atgcgaattctccgccgctttccgcgtctgctccgacgctctaacgccgccgcccgatctcctgccccgatgcaccgcctcatctcttctccctctctcatggcatctgcagcggctagccggtgctggtggtcaccattgcttgctcgaggaggacctgtcgtccgtcgtgtttcccgatttccttgggaacctcggaacatgaccaccatcagtcgagtaaaaggcgacgagtcatacaggcgacttccatcccaggaaaagaagcatactgcgatcactcaaggtatgaaaaccattgacaccaggggcacaatcttggaggctagagctggagatgagaaaagtaatagagatgcggcgtcctcagaggtttcatacatcaaatacgatgtactggggcaaagtgcgaagcaggatggctgtgatgaggatgatcgaaggagtgaaacggaggaacatgttgaggaggacgaagttcttgatcctgaagaatatactgtgaacaacatacttccaaaaagtagacaccgtgatggctctatatatagggacatcatggacacaccgtggaaaagggagtttcatattgcagaccgtaatgagactcggttggaggcaatgaggttttcgaatcccacaaattgtgtcattcgcagtaatggaacttgcatgtcacatgttcattgcaacatgctgcaaattttatcattggagttggctaaaattacactggatggtggttcagtagagttgtatggatacatagctgtgcgggatgatctagatccgttgcttaattatattgtcaactgtagcagggatgatcccatcattgtggagcagggttcgctcatcaacatggaaggccctaaccgaggaatagacatgatggactatgctctaattgaatatgacatgaggatcaagacaggtgaacaagaaaaagatgacctacagctgattgatggtgcatcaatgataggctctggaggcctatggaatcggccagaaacaatttgcattcctggcgattacggtgcagttgacataactttatcacgttttaattgttcagctgaggccaccgtagagattcttatatcagaagtgcaaagcagtttcaatttgttgctcggttgtttaaccagtgacttggataaggaaatccgtctctttgatggtgtcatcagtgagtcacgtgatttaaagaggtcggtggttgctgtaacgagggattctttcatagatttgaagttcgaagtgggcgcgtttccatccagtttcgaccagcattatgtttccttcaaggagaaaatccatggctatgatactcaagaaataaagactgattttgcgttaatctcagtaaagtttaactgcaaagccaagaagaatatcggtgacagtcagaaaatggtagagattgcagagaacaaacaatag
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| Protein seq | MRILRRFPRLLRRSNAAARSPAPMHRLISSPSLMASAAASRCWWSPLLARGGPVVRRVSRFPWEPRNMTTISRVKGDESYRRLPSQEKKHTAITQGMKTIDTRGTILEARAGDEKSNRDAASSEVSYIKYDVLGQSAKQDGCDEDDRRSETEEHVEEDEVLDPEEYTVNNILPKSRHRDGSIYRDIMDTPWKREFHIADRNETRLEAMRFSNPTNCVIRSNGTCMSHVHCNMLQILSLELAKITLDGGSVELYGYIAVRDDLDPLLNYIVNCSRDDPIIVEQGSLINMEGPNRGIDMMDYALIEYDMRIKTGEQEKDDLQLIDGASMIGSGGLWNRPETICIPGDYGAVDITLSRFNCSAEATVEILISEVQSSFNLLLGCLTSDLDKEIRLFDGVISESRDLKRSVVAVTRDSFIDLKFEVGAFPSSFDQHYVSFKEKIHGYDTQEIKTDFALISVKFNCKAKKNIGDSQKMVEIAENKQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0025340 | OsLima_07g0025340.01 | Chr07 | 28140239 | 28146006 | - | NAM | ||
| CDS seq | atgcgaattctccgccgctttccgcgtctgctccgacgctctaacgccgccgcccgatctcctgccccgatgcaccgcctcatctcttctccctctctcatggcatctgcagcggctagccggtgctggtggtcaccattgcttgctcgaggaggacctgtcgtccgtcgtgtttcccgatttccttgggaacctcggaacatgaccaccatcagtcgagtaaaaggcgacgagtcatacaggcgacttccatcccaggaaaagaagcatactgcgatcactcaaggtatgaaaaccattgacaccaggggcacaatcttggaggctagagctggagatgagaaaagtaatagagatgcggcgtcctcagaggtttcatacatcaaatacgatgtactggggcaaagtgcgaagcaggatggctgtgatgaggatgatcgaaggagtgaaacggaggaacatgttgaggaggacgaagttcttgatcctgaagaatatactgtgaacaacatacttccaaaaagtagacaccgtgatggctctatatatagggacatcatggacacaccgtggaaaagggagtttcatattgcagaccgtaatgagactcggttggaggcaatgaggttttcgaatcccacaaattgtgtcattcgcagtaatggaacttgcatgtcacatgttcattgcaacatgctgcaaattttatcattggagttggctaaaattacactggatggtggttcagtagagttgtatggatacatagctgtgcgggatgatctagatccgttgcttaattatattgtcaactgtagcagggatgatcccatcattgtggagcagggttcgctcatcaacatggaaggccctaaccgaggaatagacatgatggactatgctctaattgaatatgacatgaggatcaagacaggtgaacaagaaaaagatgacctacagctgattgatggtgcatcaatgataggctctggaggcctatggaatcggccagaaacaatttgcattcctggcgattacggtgcagttgacataactttatcacgttttaattgttcagctgaggccaccgtagagattcttatatcagaagtgcaaagcagtttcaatttgttgctcggttgtttaaccagtgacttggataaggaaatccgtctctttgatggtgtcatcagtgagtcacgtgatttaaagaggtcggtggttgctgtaacgagggattctttcatagatttgaagttcgaagtgggcgcgtttccatccagtttcgaccagcattatgtttccttcaaggagaaaatccatggctatgatactcaagaaataaagactgattttgcgttaatctcagtaaagtttaactgcaaagccaagaagaatatcggtgacagtcagaaaatggtagagattgcagagaacaaacaatag
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| Protein seq | MRILRRFPRLLRRSNAAARSPAPMHRLISSPSLMASAAASRCWWSPLLARGGPVVRRVSRFPWEPRNMTTISRVKGDESYRRLPSQEKKHTAITQGMKTIDTRGTILEARAGDEKSNRDAASSEVSYIKYDVLGQSAKQDGCDEDDRRSETEEHVEEDEVLDPEEYTVNNILPKSRHRDGSIYRDIMDTPWKREFHIADRNETRLEAMRFSNPTNCVIRSNGTCMSHVHCNMLQILSLELAKITLDGGSVELYGYIAVRDDLDPLLNYIVNCSRDDPIIVEQGSLINMEGPNRGIDMMDYALIEYDMRIKTGEQEKDDLQLIDGASMIGSGGLWNRPETICIPGDYGAVDITLSRFNCSAEATVEILISEVQSSFNLLLGCLTSDLDKEIRLFDGVISESRDLKRSVVAVTRDSFIDLKFEVGAFPSSFDQHYVSFKEKIHGYDTQEIKTDFALISVKFNCKAKKNIGDSQKMVEIAENKQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0025340 | OsLima_07g0025340.02 | Chr07 | 28140601 | 28141088 | - | IsoSeq | ||
| CDS seq | atgcaacatcacatttacacacccatgaatatggccctaacacacgctcaaagagataaaaatcaacggcacatctttgatctcactagatctataatgttaactttattatacttattatttagaatgtatatttcgcatatgaaattatgtatccaagtttattacagcaaatgcttgaataacggcattgcactt |
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| Protein seq | MQHHIYTPMNMALTHAQRDKNQRHIFDLTRSIMLTLLYLLFRMYISHMKLCIQVYYSKCLNNGIAL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.193590 | 0.549043 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0646600 | RBH | 5.391610 | 7.144322 | 8.804140 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45195 | SBH | 2.903098 | 3.401609 | 2.690468 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0646600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025390 | SBH | 4.494284 | 19.975655 | 17.351009 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025460 | SBH | 0.679900 | 1.785434 | 7.494068 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025290 | SBH | 5.052930 | 5.726491 | 22.455086 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025310 | RBH | 1.124307 | 0.675823 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025560 | RBH | 17.885160 | 28.032761 | 37.332256 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0442700 | SBH | 4.5853915 | 3.4709785 | 3.309221 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026020 | RBH | 0.860199 | 1.275691 | 1.102993 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0454400 | SBH | 0 | 7.5595935 | 5.5632465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025290 | RBH | 1.043172 | 0.276753 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025370 | SBH | 4.018462 | 1.643575 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025360 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025500 | SBH | 0.675070 | 1.235354 | 1.293433 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025220 | SBH | 0.882515 | 6.854999 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025210 | SBH | 1.325499 | 6.854395 | 5.749860 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025270 | SBH | 2.865501 | 13.447166 | 15.906452 |
