Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0024630 | OGI:07073730 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:27652529-27653874 | ||||||||
| Gene Symbol | prx106, prx105, OsPRX105, prx107, prx108 | ||||||||||
| DNA seq | acaacggtagtggagtgtgtgagtagctgaggaggtcgaccatggcggcggctagggttgcgatgtgggtggcgtgcgtgttggcaatggcggcggcgtgccaggggcggcttagggttgggtactacaagcggaagtgcgcgccggcggagtacgtcgtcagggccgtcgtcggcaacgccgtccgccagaaccccggcgtcggcgccggcatcgtccgcatgttcttccacgactgcttcgtccaggtacacagatcgatccgtacgtccatggcgatccatggatacgcaacattggttgccgcaattgatgacactgagtgacaagtcgttcgtggttgcaggggtgtgacgcgtcggtgctgctcgacccgacggcggcgaacccgcagccggagaagctcggcccaccgaacttccccagcctgcgggggttcgaggtgatcgacgcggcgaaggcggcggtggagaaggcctgcccgggcgtcgtctcctgcgccgacatcatcgcgttcgcggcgcgcgacgcctccttcttccttagcggcggcggcatcagctaccgcatccccgcggggaggctcgacggacgcgtctccctcgccaacgagacgctcgcgttcctcccgccgcctgtgttcaacctcacccagctcgtcgccagcttccaggcgaagggcctcgacgccgacgacatggtcaccctctccggcgcgcacaccatcggccgctcccactgctcctccttcgccgaccgcctctcgccgccgtcggacatggaccccggcctcgccgccgcgctccggagcaagtgcccggcgagccccaacttcaccgacgacccgacggtggcgcaggacgcggtgacgccggacaggatggacaggcagtactaccggaacgtgctcgacaggaaggtgctgttcgactccgacgccgcgctgctggcgtcgcggccgacggcggcgatggtggcgcggaacgcggcggcgcgcgggaggtgggagaggaggttcgcgagggcgatggtgaagatgggcgggatcgaggtcaagaccgccgccaatggcgagatcaggaggatgtgcagggttgttaacgagtaactgttaatttcagaggaggatgcatctagctacgtacgtgccattttgatttgttttcttcagaattcagaagcatgaattgtcacatttcaatattatttcgttgcttgattcgagatgatctggggcaaatgttgtatttgcacctgacggaattaattgtacgctccattagagatatgatcgaataaagtttttcagtttttagccagcctctccattctttctccagttgtga
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| CDS seq | atggcggcggctagggttgcgatgtgggtggcgtgcgtgttggcaatggcggcggcgtgccaggggcggcttagggttgggtactacaagcggaagtgcgcgccggcggagtacgtcgtcagggccgtcgtcggcaacgccgtccgccagaaccccggcgtcggcgccggcatcgtccgcatgttcttccacgactgcttcgtccagttgtga |
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| Protein seq | MAAARVAMWVACVLAMAAACQGRLRVGYYKRKCAPAEYVVRAVVGNAVRQNPGVGAGIVRMFFHDCFVQL |
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| Function | Peroxidase 2 [UniProtKB/Swiss-Prot:Q9FEQ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0024630 | OsLima_07g0024630.01 | Chr07 | 27652570 | 27653874 | + | NAM | ||
| CDS seq | atggcggcggctagggttgcgatgtgggtggcgtgcgtgttggcaatggcggcggcgtgccaggggcggcttagggttgggtactacaagcggaagtgcgcgccggcggagtacgtcgtcagggccgtcgtcggcaacgccgtccgccagaaccccggcgtcggcgccggcatcgtccgcatgttcttccacgactgcttcgtccagttgtga
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| Protein seq | MAAARVAMWVACVLAMAAACQGRLRVGYYKRKCAPAEYVVRAVVGNAVRQNPGVGAGIVRMFFHDCFVQL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0024630 | OsLima_07g0024630.02 | Chr07 | 27652529 | 27653846 | + | IsoSeq | ||
| CDS seq | atgaattgtcacatttcaatattatttcgttgcttgattcgagatgatctggggcaaatgttgtatttgcacctgacggaattaattgtacgctccattagagatatgatc |
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| Protein seq | MNCHISILFRCLIRDDLGQMLYLHLTELIVRSIRDMI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AL | Chr07 | 27652776 | 27653874 | + | OsLima_07g0024630.02 | OsLima_07g0024630.02,OsLima_07g0024630.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.098938 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0639000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g44550 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0639000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0024850 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0024930 | RBH | 0.0 | 13.869121 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0024790 | RBH | 0.0 | 18.113638 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0024690 | RBH | 0.0 | 1.691006 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0024820 | RBH | 0.856658 | 46.503635 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0437400 | RBH | 0 | 0.866566 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0025350 | RBH | 0.0 | 7.666549 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0448500 | RBH | 0.020039 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0018830 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0024750 | RBH | 0.0 | 24.713892 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0024670 | RBH | 0.0 | 58.938541 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0024880 | RBH | 0.0 | 3.982519 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0024580 | RBH | 0.000000 | 42.143944 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G024570 | RBH | 0.0 | 12.816835 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0024630 | RBH | 0.0 | 52.529675 | 0.0 |
