Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0018830 | OGI:03038910 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:15275578-15280213 | ||||||||
| Gene Symbol | prx45 | ||||||||||
| DNA seq | gcacttctctctcttcctgttattagctatagcagcttaattagcttaagcacaaaaggtacagtaagcctaagctagctacacactaagcaagcttattagccatggcttcatcaccaagtctgccattggtgacgtgtgccctgctgctgctgctggccgtggcatgccaggctcacccttactggccactggagttggcgtactaccgcgacaagtgcccccaggccgaggccgtcgtcaaggccgtcgtcggggaggccgtccgccagaaccccggcaatggcgccgccgtcatccgcatgctcttccacgactgctttgtcgaggtgcgtacgttagcttcttcctcttctccggcgagatcgattgatcgacttgagctatgtgtacttagatgtgcatggtgttttgttgttagggttgtgatgcttcgatcctcctggacccgacgccgttcaacccgacgccggagaagctgagcgcgccgaacaacccgtccatgcggggcttcgacctcatcgacgcgatcaagcacgccgtggaggcggcgtgcccgggcgtcgtctcgtgcgccgacatcatcgccttcgcggcgcgcgacgccacctacttcctcagcggcgggaaggtctacttcgacatgccgtcgggccgccgcgacgggaccttctccaacgactccggcccgatcgacttcctcccgccgccgacgtccaacctcagcgacctcgtctccagcttcgccgtcaagggcctctccgtggaggacatggtggtgctctcgggcgcccacaccgtcggccgctcccactgctcctccttcgtccccgaccgcctcaacgcctccgtcttctccgacatcgacggcggcttcgcctggttcctcaggtcgcagtgcccgctcgacgcgacgcccggcggcaacgatcccacggtgatgctggacttcgtgacgcccaacacgctggacaaccagtactacaagaacgtgctcgaccacaaggtgctcttcacctccgacgcggcgctcctgacgtcgccggagacggcgaagatggtggtggacaacgccgtcatccccgggtggtgggaggacaggttcaaggcggccatggtgaagttggcgagcatccaggtgaagaccgggtaccaggggcagatcaggaagaactgcagggtcatcaactactgatttatctacaagtttagctgcgtgattcaattacctggtgaagtacgtgctcaacgatgacgacgtacacggtttgatagtttcacaccctccttgatcaagtcgcaagcgtacgtgttgatgatgttatgattggatgtgacttttgcttcacatttatgttctccctcttttgttaccattccttaattcctcatttgtgaaccccaaggtttacatgctatggatttctttgttttgacctaattgtgtaataaggtcatatgtacttggaataattgtaagttaagttttttgcaacaagtgcccgctatatattgatgtttatctgaaatttgaaaagagaaaaatctaggatggctcgagatacccatggatgtaatgatatagatgtgtgagtgcatgactttcatttattctcttattcaaactagctgggtggcccgcacaattgcgcggctagcacccaaacaaaatcatatatctttcagtatgattttacttaaaatttattaaatagctatacccgtattcctaattatgtagtttttaaaagtcacactagctgctaccccttacttctatcatatccttctttatttgcttgcttggtctacaactatttctattcattcttcttgaaacgtttcaaaattggatcttatagttttttgagtttattatctcgttgggtttcgtttttataatatctggaagtcccgtcaaacgctgccattatactcctctacggtccgtccactatcttttctcttttgtcattgggattttacaaatcgaatataattatcgttcgagttcattttttactttctataagtcccgccaaaccgtcagcggcttttccattgtactttatgactcgtccgctgtctacttctttattgtcatttgtcattgagattttaaaatcgaacatgattatcattggattttttttttactttttagaagttccgaacctttaaaaattggaccttatagtttttagaatttattatcttattgggttttatttcttataatttttagaagtcacgtcaaacgatgccactatactcctctacgacccatccgccgtctactctttattgccattgggattctaaaaatcgaatataactatcattggaattcattttttattttctagaagtcccgccaaccgtcggcagctctgcaactatactcctatacaccccacccgctgcttctcctttttattgtcattgagattttaaaaatcaaatatgattatcaatagggtttattttttttactttctagaagtcccggcaaccgccttgcccgtttgcttcacggcttgcctgtcgtccctccttttaatcatcattaggattctatctggtgttttactaatagtttttatatgtcgtatcaaccgccaccactctactcttttataggcttgttatttaatttatctcatcgtgtgttttagatagtcttttttttcaatagtctttatttttatcaccaattttagttatttataaattgtattcctaattgaaatcttttttctttttctaatttcagaatttaattttttaaacttttatttaataccgtatagtattcttttaatatttttattttttatttttgaatttcggtcgtttcaaaattgtatttctacttgaactctcttttagtttttctaatttttgatattttttatttttttattctgaattttaattaatttcgtattgggttgttatatggattcttcattcaatattgcttatttttaattccgaatttcagttaattttaaattgtattcctacttgaactcttttttttctttttgctaatttcggattttatttttatttttattccgaatagtaactaatctcgtattgggttcttatatggactcttctctcaatattcctttttctaattccgaatttcagttatttttaaattatattcctacttggactctctcgttttattttttaattttggattttattttatttttattttgaattttgattaatctcgtattgggttcttatatggacacttctttcaatattgcttatttttaattccgaatttcagctatttttaattgtatttctacttggactttccttttctttttctccgattaatgtggaaatttctagccctcacagcgaacgtggcgacttctttcaaagctgttttaataatataatagatagattattataacacacaattcatatagttgtatgttaggggaaagccgatcatgcatacacactctttttatgtatatcaactaaattgtcataaaaaatagtaaaatagatcaatatatcatatatcacttcacaaacatgttgtttaaatttgacctacacaacaaacagaaacaaaaataacaaaaaatgatgataattaagaaattgtgtactatttacggttgagatttgttatttttgtttctacttatatgtgttgaattttaacttgaatatttgtagacagtgaaatatcatattttgatctattttaccatttttcaacaaaattttgatggctttgcagttggcatctatgaaatgggtatatgtcatcatatccttttaaaagaaaaacagcttactagaactaccatatatagggtcaattggctggctacttaccgtcaacccaagtactccctctgtattttttactgtattttttaaatgtgttactgtttacttttaagcatacgaccattcatcttattaatttactatgtaaataaagatgaatggttattatttcttctattattatttaacttttttgtgatatgttcatctagtaaaggtactttaagtatggcatatagttttgtatatttacattgaataaaagaatggtacggtcaaatatatatatattaaaagtcaatgatattctatatttgaaaacaaagggagtagttatttcattttgcgactatcttaaaaattatcgagagtttttttggttgtaaaactttaaaatataactatagtaactacaatataactagatgcatatataatttatatgtaactagaataaaacatgtatggcgcgattgcagggcactccctccacaaactgaaggccgcgaggtcaaatcccaacaattgtgcttaccaatttattgtttctcatccttgctagcacgaatcttagagcaaatatgacggtctaaaagtcgaaagtttccctaaaaatccgtcgaaagtaatctagcaattccgtttcattttcacttccttgaggaaatatctataccgcttgaaggaaagcaagtttaatttgttagcactaattaaagcagtaataccttaagcctcttcaagaactaaagaacacttcaaattattttttagcacagtattattgtagccatag
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| CDS seq | atggcttcatcaccaagtctgccattggtgacgtgtgccctgctgctgctgctggccgtggcatgccaggctcacccttactggccactggagttggcgtactaccgcgacaagtgcccccaggccgaggccgtcgtcaaggccgtcgtcggggaggccgtccgccagaaccccggcaatggcgccgccgtcatccgcatgctcttccacgactgctttgtcgagccatag |
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| Protein seq | MASSPSLPLVTCALLLLLAVACQAHPYWPLELAYYRDKCPQAEAVVKAVVGEAVRQNPGNGAAVIRMLFHDCFVEP |
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| Function | Peroxidase 2 [UniProtKB/Swiss-Prot:Q9FEQ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0018830 | OsLima_03g0018830.01 | Chr03 | 15275578 | 15280213 | + | NAM | ||
| CDS seq | atggcttcatcaccaagtctgccattggtgacgtgtgccctgctgctgctgctggccgtggcatgccaggctcacccttactggccactggagttggcgtactaccgcgacaagtgcccccaggccgaggccgtcgtcaaggccgtcgtcggggaggccgtccgccagaaccccggcaatggcgccgccgtcatccgcatgctcttccacgactgctttgtcgagccatag
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| Protein seq | MASSPSLPLVTCALLLLLAVACQAHPYWPLELAYYRDKCPQAEAVVKAVVGEAVRQNPGNGAAVIRMLFHDCFVEP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0368900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g25330 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0368900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0019130 | SBH | 0.0 | 23.390972 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0018950 | RBH | 0.0 | 6.420335 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0018980 | RBH | 0.0 | 178.100525 | 0.465937 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0019030 | RBH | 0.0 | 3.749984 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0018820 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0240300 | RBH | 2.454506 | 58.2449035 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018680 | RBH | 0.0 | 7.709681 | 0.081673 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0240400 | RBH | 1.881955 | 9.5509355 | 0.0184975 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0024630 | RBH | 0.0 | 0.098938 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0018860 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0018920 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018790 | RBH | 0.000000 | 1.781547 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018700 | RBH | 0.0 | 53.564655 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018800 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018660 | RBH | 0.0 | 127.904854 | 0.540203 |
