Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0023380 | OGI:07071250 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:26672931-26674805 | ||||||||
| Gene Symbol | PPR | ||||||||||
| DNA seq | atggcgaggcgcgcgaggctccggctccggctcgtccgcgccctcgccacggcctccgcgtccggatcgcctgcggcgccgcggccggcgaggcaagcggcgccctacctggcggtgctccaccgccgcgggagggcggaggcggcggcgtgcctgaaccgccacctccgcctgctcccgctcggggatgcgacctcgctcctcgacgcgctcccgtccgtccgcgacgccgtctcctacaacaccgtgctcaccgcgctctgccgccgcggccaccacgaccgcgcgggcgcgctgctccgcgccatgtccctggagccccacccggcgtgccgccccaacgccgtctcctacaccgtcctcatgcgcgcgctctgcgccgaccgccgcgcggaccaggccgtcgggctgctgcggtccatgcggtccgccggcgtccgcgccgacgtggtcacctacggcaccctcatccgtgggctgtgcgacgccgcggaagtggacaaggccgtggagctgatgggcgagatgtgcgaaagtggcatcgagcctaacgtggtggtgtacagctctttgctccaagggtattgcaagtctgggcggtgggaggatgtaggcaaggtgttcgtggaaatgtccgagaagggaatagagccggatgtggtgatgtacactgggttgatcgatagcctttgtaaagtggggaaggcaaagaaggcgcacggggtgatggacatgatggtgaggagggggttggagccaaatgtggttacgtacaacgtgctcatcaattgcatgtgcaaggaaggttcagtgaaggaggcaatcggtgtgctgaagaagatgtccgagaagggagtggcgccggatgttgtgacatataacacactgatcaaggggctctcggatgtgctcgagatggatgaagcaatgtggttgcttgaggagatggttcgaggtgagaatatagttaagcctaatgtggtgacattcaactcggttatacagggcctttgtgatattggtaggatgaggcaagcgttccaagtccgtgcgatgatggaagagactgggtgtatggttaacttggtgacatacaatctgctgattggtggactccttagagtccacaaggtaaggaaggctatggagctgatggatgagatgacttgtctagggctggagcctgattcattcacctatagtatactgataaagggttcctgcaaaatgtggcaagttgaccgtgcagaagatcttttatctacaatgagagatcgtgggatagaacctgagctatttcactatattcctttgcttgtagccatgtgtgaacagggtatgatggaacgagcgaggaatttgttcaatgaaatggacaacaactttccactagatgtggttgcatatagcactatgatccatggtgcttgcaaagcaggggacttgaaaactgcgaaagagttgcttaagagcatggttgatgagggactgactcctgatgctgttacatattctatagtaatcaatatgtttgctaaatctggagacatggaggcggcaaatggtgtgcttaaacagatgacagcaagtggctttttgcctgacgttgccgtatttgattcactgatccaaggttatagcacaaaaggagagataaacaaggttctcgagttaattcgggaaatgataacaaagaatatagcacttgattcaaaaattatttccactctttccacttctctggttgcaagcaatgaaggcaaagcattgttgcagagcttgcctgatttcagtgcagaaatatcaaaaggcaacatcaattcgccccaggagttaatgaaagtgttgcataatgtgtgcccccaaacaaattaa
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| CDS seq | atggcgaggcgcgcgaggctccggctccggctcgtccgcgccctcgccacggcctccgcgtccggatcgcctgcggcgccgcggccggcgaggcaagcggcgccctacctggcggtgctccaccgccgcgggagggcggaggcggcggcgtgcctgaaccgccacctccgcctgctcccgctcggggatgcgacctcgctcctcgacgcgctcccgtccgtccgcgacgccgtctcctacaacaccgtgctcaccgcgctctgccgccgcggccaccacgaccgcgcgggcgcgctgctccgcgccatgtccctggagccccacccggcgtgccgccccaacgccgtctcctacaccgtcctcatgcgcgcgctctgcgccgaccgccgcgcggaccaggccgtcgggctgctgcggtccatgcggtccgccggcgtccgcgccgacgtggtcacctacggcaccctcatccgtgggctgtgcgacgccgcggaagtggacaaggccgtggagctgatgggcgagatgtgcgaaagtggcatcgagcctaacgtggtggtgtacagctctttgctccaagggtattgcaagtctgggcggtgggaggatgtaggcaaggtgttcgtggaaatgtccgagaagggaatagagccggatgtggtgatgtacactgggttgatcgatagcctttgtaaagtggggaaggcaaagaaggcgcacggggtgatggacatgatggtgaggagggggttggagccaaatgtggttacgtacaacgtgctcatcaattgcatgtgcaaggaaggttcagtgaaggaggcaatcggtgtgctgaagaagatgtccgagaagggagtggcgccggatgttgtgacatataacacactgatcaaggggctctcggatgtgctcgagatggatgaagcaatgtggttgcttgaggagatggttcgaggtgagaatatagttaagcctaatgtggtgacattcaactcggttatacagggcctttgtgatattggtaggatgaggcaagcgttccaagtccgtgcgatgatggaagagactgggtgtatggttaacttggtgacatacaatctgctgattggtggactccttagagtccacaaggtaaggaaggctatggagctgatggatgagatgacttgtctagggctggagcctgattcattcacctatagtatactgataaagggttcctgcaaaatgtggcaagttgaccgtgcagaagatcttttatctacaatgagagatcgtgggatagaacctgagctatttcactatattcctttgcttgtagccatgtgtgaacagggtatgatggaacgagcgaggaatttgttcaatgaaatggacaacaactttccactagatgtggttgcatatagcactatgatccatggtgcttgcaaagcaggggacttgaaaactgcgaaagagttgcttaagagcatggttgatgagggactgactcctgatgctgttacatattctatagtaatcaatatgtttgctaaatctggagacatggaggcggcaaatggtgtgcttaaacagatgacagcaagtggctttttgcctgacgttgccgtatttgattcactgatccaaggttatagcacaaaaggagagataaacaaggttctcgagttaattcgggaaatgataacaaagaatatagcacttgattcaaaaattatttccactctttccacttctctggttgcaagcaatgaaggcaaagcattgttgcagagcttgcctgatttcagtgcagaaatatcaaaaggcaacatcaattcgccccaggagttaatgaaagtgttgcataatgtgtgcccccaaacaaattaa
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| Protein seq | MARRARLRLRLVRALATASASGSPAAPRPARQAAPYLAVLHRRGRAEAAACLNRHLRLLPLGDATSLLDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGENIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTCLGLEPDSFTYSILIKGSCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSMVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVASNEGKALLQSLPDFSAEISKGNINSPQELMKVLHNVCPQTN |
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| Function | Pentatricopeptide repeat-containing protein At4g28010 [UniProtKB/Swiss-Prot:Q9SUD8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0023380 | OsLima_07g0023380.01 | Chr07 | 26672931 | 26674805 | + | NAM | ||
| CDS seq | atggcgaggcgcgcgaggctccggctccggctcgtccgcgccctcgccacggcctccgcgtccggatcgcctgcggcgccgcggccggcgaggcaagcggcgccctacctggcggtgctccaccgccgcgggagggcggaggcggcggcgtgcctgaaccgccacctccgcctgctcccgctcggggatgcgacctcgctcctcgacgcgctcccgtccgtccgcgacgccgtctcctacaacaccgtgctcaccgcgctctgccgccgcggccaccacgaccgcgcgggcgcgctgctccgcgccatgtccctggagccccacccggcgtgccgccccaacgccgtctcctacaccgtcctcatgcgcgcgctctgcgccgaccgccgcgcggaccaggccgtcgggctgctgcggtccatgcggtccgccggcgtccgcgccgacgtggtcacctacggcaccctcatccgtgggctgtgcgacgccgcggaagtggacaaggccgtggagctgatgggcgagatgtgcgaaagtggcatcgagcctaacgtggtggtgtacagctctttgctccaagggtattgcaagtctgggcggtgggaggatgtaggcaaggtgttcgtggaaatgtccgagaagggaatagagccggatgtggtgatgtacactgggttgatcgatagcctttgtaaagtggggaaggcaaagaaggcgcacggggtgatggacatgatggtgaggagggggttggagccaaatgtggttacgtacaacgtgctcatcaattgcatgtgcaaggaaggttcagtgaaggaggcaatcggtgtgctgaagaagatgtccgagaagggagtggcgccggatgttgtgacatataacacactgatcaaggggctctcggatgtgctcgagatggatgaagcaatgtggttgcttgaggagatggttcgaggtgagaatatagttaagcctaatgtggtgacattcaactcggttatacagggcctttgtgatattggtaggatgaggcaagcgttccaagtccgtgcgatgatggaagagactgggtgtatggttaacttggtgacatacaatctgctgattggtggactccttagagtccacaaggtaaggaaggctatggagctgatggatgagatgacttgtctagggctggagcctgattcattcacctatagtatactgataaagggttcctgcaaaatgtggcaagttgaccgtgcagaagatcttttatctacaatgagagatcgtgggatagaacctgagctatttcactatattcctttgcttgtagccatgtgtgaacagggtatgatggaacgagcgaggaatttgttcaatgaaatggacaacaactttccactagatgtggttgcatatagcactatgatccatggtgcttgcaaagcaggggacttgaaaactgcgaaagagttgcttaagagcatggttgatgagggactgactcctgatgctgttacatattctatagtaatcaatatgtttgctaaatctggagacatggaggcggcaaatggtgtgcttaaacagatgacagcaagtggctttttgcctgacgttgccgtatttgattcactgatccaaggttatagcacaaaaggagagataaacaaggttctcgagttaattcgggaaatgataacaaagaatatagcacttgattcaaaaattatttccactctttccacttctctggttgcaagcaatgaaggcaaagcattgttgcagagcttgcctgatttcagtgcagaaatatcaaaaggcaacatcaattcgccccaggagttaatgaaagtgttgcataatgtgtgcccccaaacaaattaa
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| Protein seq | MARRARLRLRLVRALATASASGSPAAPRPARQAAPYLAVLHRRGRAEAAACLNRHLRLLPLGDATSLLDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGENIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTCLGLEPDSFTYSILIKGSCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSMVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVASNEGKALLQSLPDFSAEISKGNINSPQELMKVLHNVCPQTN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0621100 | RBH | 0.091371 | 0.316792 | 0.421037 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g42880 | RBH | 0.0 | 0.0 | 0.081924 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0621100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0023650 | RBH | 0.0 | 0.967958 | 0.646816 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023720 | RBH | 0.0 | 0.803350 | 0.787673 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023570 | RBH | 0.0 | 2.378090 | 0.529678 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0023500 | RBH | 0.0 | 0.031460 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0023610 | RBH | 0.0 | 7.366609 | 3.296917 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0421000 | RBH | 2.065469 | 4.94841 | 4.411301 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024120 | RBH | 0.244687 | 0.083846 | 0.262487 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0431400 | RBH | 1.177732 | 2.146018 | 5.1643185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0018460 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023530 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023430 | RBH | 0.0 | 6.735190 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023630 | RBH | 0.097656 | 0.127321 | 0.122779 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0023390 | RBH | 0.0 | 1.479111 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023320 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023340 | RBH | 0.204786 | 3.776773 | 0.837241 |
