Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0018460 | OGI:03038010 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:14974091-14975832 | ||||||||
| Gene Symbol | PPR | ||||||||||
| DNA seq | ctacttgttcgccaccaaaatattctccaactcatgagagtaacataactttcctgtgcatagctgttcgacaagcatagtacaagccaagcttcctagttcatgtccaattttgaacattgtatttaggactaacagtgcatcatccacccgcccagaggagctcagcaattctaccagggaattaaatgtatgttcccgaggtttcagattcttctttaacatgcctgccaaccatgccatgccgtcctcaggtctcctggctttacagaacccatttatgatactatcattgatccgcgctaacggttccaagcccttagcatgcatcaccttaagcaattcaactgcagcatcaacctgtccttcctcacacatggtgtcaatgagcggcgtgaaggttgacacacttggctccaaaccagatgacagtagctgctcgtacacctgtattgcctcactcaacctcccagccttgcataagccctgaatcaatatgttgtaagtaatcacatcatgctcaatcccctttttaaccatttcctcaaacatcccaagcgcttcgtccaccctcccatgggtacaaaaccctgtgaccaaaatgttacagctgactgtactctcctttaaacccttcccgagcatttcatcatacaccttgcgagccatctcgaaatcaccagctttacaatagtaggccaccagagagcagtaggcatactcgttaggctccattcctttgtccaccatctcattccagatttgccgcgcttcgtctatgcagcccatcttgcacaatccgtcgatcgccgttgtgtatgtgaccgcatcgacgttgtagccccgcagcttgatctcgttgaagactcgcagggcctcgcttcccatcttgtgcgcgaaaagcccgtggataatgcgctggtagatgaccgtatctgggacacttcccgcggcgatcatgaggtggagcgtctcggacaccttgccgaagttggcggcggcggagaaggccgcgacgagatccgcgacggcgtcaagctggggagggacgccgcggcgcgccccgtcgcggaggaggcggaggccgtcgagcggacggccctcggcggagcaggcgcgcacgaggaaggccacggtggcggcgtcgcccgggaagtccggggaggatgagaacgcggagaagaggcggaagacgaggtcggggcgcgcggcgcggagggcggagcgcatcgcgaagttgagggcgcggagggaggggtggatgccgaggcgcgaggcgagcacctcggcggcgtcggcggcgtcgggcggccagagctggatcaggaagccgtccacgccggggaggagcggcggctcgtgctcgtgctcgtgctcgggctccgccggtgcggcgtcgggggcggcggggaggtgcgaggagaggaagcgcaggaagcggagggagggttcaggggaaggcaggaggtgggagagggtgaggcggacgcaggccgggtggaagaggaggtcgccggggaggagcgagaggaggcgggactcgtagcgcgccgcgccgaggatgttcgccgcggccgtggcggccgcggccaggaaggtggccggcggcgggttgttggcgtcggcagcagcggcggcggcggaggtggaggtggagcagaggcgctgcacggaatgacgcaccggccgcagcatcgtggcggcggcggcggcggcgcgaggagtgtcaagtgtgtcacggt
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| CDS seq | atgctgcggccggtgcgtcattccgtgcagcgcctctgctccacctccacctccgccgccgccgctgctgccgacgccaacaacccgccgccggccaccttcctggccgcggccgccacggccgcggcgaacatcctcggcgcggcgcgctacgagtcccgcctcctctcgctcctccccggcgacctcctcttccacccggcctgcgtccgcctcaccctctcccacctcctgccttcccctgaaccctccctccgcttcctgcgcttcctctcctcgcacctccccgccgcccccgacgccgcaccggcggagcccgagcacgagcacgagcacgagccgccgctcctccccggcgtggacggcttcctgatccagctctggccgcccgacgccgccgacgccgccgaggtgctcgcctcgcgcctcggcatccacccctccctccgcgccctcaacttcgcgatgcgctccgccctccgcgccgcgcgccccgacctcgtcttccgcctcttctccgcgttctcatcctccccggacttcccgggcgacgccgccaccgtggccttcctcgtgcgcgcctgctccgccgagggccgtccgctcgacggcctccgcctcctccgcgacggggcgcgccgcggcgtccctccccagcttgacgccgtcgcggatctcgtcgcggccttctccgccgccgccaacttcggcaaggtgtccgagacgctccacctcatgatcgccgcgggaagtgtcccagatacggtcatctaccagcgcattatccacgggcttttcgcgcacaagatgggaagcgaggccctgcgagtcttcaacgagatcaagctgcggggctacaacgtcgatgcggtcacatacacaacggcgatcgacggattgtgcaagatgggctgcatagacgaagcgcggcaaatctggaatgagatggtggacaaaggaatggagcctaacgagtatgcctactgctctctggtggcctactattgtaaagctggtgatttcgagatggctcgcaaggtgtatgatgaaatgctcgggaagggtttaaaggagagtacagtcagctgtaacattttggtcacagggttttgtacccatgggagggtggacgaagcgcttgggatgtttgaggaaatggttaaaaaggggattgagcatgatgtgattacttacaacatattgattcagggcttatgcaaggctgggaggttgagtgaggcaatacaggtgtacgagcagctactgtcatctggtttggagccaagtgtgtcaaccttcacgccgctcattgacaccatgtgtgaggaaggacaggttgatgctgcagttgaattgcttaaggtgatgcatgctaagggcttggaaccgttagcgcggatcaatgatagtatcataaatgggttctgtaaagccaggagacctgaggacggcatggcatggttggcaggcatgttaaagaagaatctgaaacctcgggaacatacatttaattccctggtagaattgctgagctcctctgggcgggtggatgatgcactgttagtcctaaatacaatgttcaaaattggacatgaactaggaagcttggcttgtactatgcttgtcgaacagctatgcacaggaaagttatgttactctcatgagttggagaatattttggtggcgaacaagtag
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| Protein seq | MLRPVRHSVQRLCSTSTSAAAAAADANNPPPATFLAAAATAAANILGAARYESRLLSLLPGDLLFHPACVRLTLSHLLPSPEPSLRFLRFLSSHLPAAPDAAPAEPEHEHEHEPPLLPGVDGFLIQLWPPDAADAAEVLASRLGIHPSLRALNFAMRSALRAARPDLVFRLFSAFSSSPDFPGDAATVAFLVRACSAEGRPLDGLRLLRDGARRGVPPQLDAVADLVAAFSAAANFGKVSETLHLMIAAGSVPDTVIYQRIIHGLFAHKMGSEALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQGLCKAGRLSEAIQVYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVELLKVMHAKGLEPLARINDSIINGFCKARRPEDGMAWLAGMLKKNLKPREHTFNSLVELLSSSGRVDDALLVLNTMFKIGHELGSLACTMLVEQLCTGKLCYSHELENILVANK |
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| Function | Pentatricopeptide repeat-containing protein At5g18950 [UniProtKB/Swiss-Prot:Q8GYM2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0018460 | OsLima_03g0018460.01 | Chr03 | 14974091 | 14975832 | - | NAM | ||
| CDS seq | atgctgcggccggtgcgtcattccgtgcagcgcctctgctccacctccacctccgccgccgccgctgctgccgacgccaacaacccgccgccggccaccttcctggccgcggccgccacggccgcggcgaacatcctcggcgcggcgcgctacgagtcccgcctcctctcgctcctccccggcgacctcctcttccacccggcctgcgtccgcctcaccctctcccacctcctgccttcccctgaaccctccctccgcttcctgcgcttcctctcctcgcacctccccgccgcccccgacgccgcaccggcggagcccgagcacgagcacgagcacgagccgccgctcctccccggcgtggacggcttcctgatccagctctggccgcccgacgccgccgacgccgccgaggtgctcgcctcgcgcctcggcatccacccctccctccgcgccctcaacttcgcgatgcgctccgccctccgcgccgcgcgccccgacctcgtcttccgcctcttctccgcgttctcatcctccccggacttcccgggcgacgccgccaccgtggccttcctcgtgcgcgcctgctccgccgagggccgtccgctcgacggcctccgcctcctccgcgacggggcgcgccgcggcgtccctccccagcttgacgccgtcgcggatctcgtcgcggccttctccgccgccgccaacttcggcaaggtgtccgagacgctccacctcatgatcgccgcgggaagtgtcccagatacggtcatctaccagcgcattatccacgggcttttcgcgcacaagatgggaagcgaggccctgcgagtcttcaacgagatcaagctgcggggctacaacgtcgatgcggtcacatacacaacggcgatcgacggattgtgcaagatgggctgcatagacgaagcgcggcaaatctggaatgagatggtggacaaaggaatggagcctaacgagtatgcctactgctctctggtggcctactattgtaaagctggtgatttcgagatggctcgcaaggtgtatgatgaaatgctcgggaagggtttaaaggagagtacagtcagctgtaacattttggtcacagggttttgtacccatgggagggtggacgaagcgcttgggatgtttgaggaaatggttaaaaaggggattgagcatgatgtgattacttacaacatattgattcagggcttatgcaaggctgggaggttgagtgaggcaatacaggtgtacgagcagctactgtcatctggtttggagccaagtgtgtcaaccttcacgccgctcattgacaccatgtgtgaggaaggacaggttgatgctgcagttgaattgcttaaggtgatgcatgctaagggcttggaaccgttagcgcggatcaatgatagtatcataaatgggttctgtaaagccaggagacctgaggacggcatggcatggttggcaggcatgttaaagaagaatctgaaacctcgggaacatacatttaattccctggtagaattgctgagctcctctgggcgggtggatgatgcactgttagtcctaaatacaatgttcaaaattggacatgaactaggaagcttggcttgtactatgcttgtcgaacagctatgcacaggaaagttatgttactctcatgagttggagaatattttggtggcgaacaagtag
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| Protein seq | MLRPVRHSVQRLCSTSTSAAAAAADANNPPPATFLAAAATAAANILGAARYESRLLSLLPGDLLFHPACVRLTLSHLLPSPEPSLRFLRFLSSHLPAAPDAAPAEPEHEHEHEPPLLPGVDGFLIQLWPPDAADAAEVLASRLGIHPSLRALNFAMRSALRAARPDLVFRLFSAFSSSPDFPGDAATVAFLVRACSAEGRPLDGLRLLRDGARRGVPPQLDAVADLVAAFSAAANFGKVSETLHLMIAAGSVPDTVIYQRIIHGLFAHKMGSEALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQGLCKAGRLSEAIQVYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVELLKVMHAKGLEPLARINDSIINGFCKARRPEDGMAWLAGMLKKNLKPREHTFNSLVELLSSSGRVDDALLVLNTMFKIGHELGSLACTMLVEQLCTGKLCYSHELENILVANK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0363700 | RBH | 0.520409 | 0.885213 | 0.738718 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g24880 | RBH | 0.378797 | 0.619389 | 0.097230 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0363700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0018730 | RBH | 0.054528 | 0.0 | 1.274240 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0018550 | RBH | 0.090351 | 0.0 | 0.183147 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0018590 | RBH | 0.241760 | 1.279829 | 0.909924 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0018630 | RBH | 0.081876 | 0.067611 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0018400 | RBH | 1.873417 | 3.964520 | 4.023436 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0235600 | RBH | 0.9841545 | 4.04918 | 1.610424 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018230 | RBH | 0.131133 | 0.184153 | 0.454950 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0236200 | RBH | 0.753853 | 3.5036055 | 3.506614 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023380 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0018480 | RBH | 0.084391 | 9.282209 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0018550 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018410 | RBH | 0.105813 | 0.410219 | 0.066076 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018320 | RBH | 0.0 | 0.796021 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018340 | RBH | 0.135003 | 1.991593 | 0.668428 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018280 | RBH | 0.272817 | 2.269261 | 0.899673 |
