Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0019780 | OGI:07004740 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:23871520-23873040 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggcactatgatatatcttgcttgtgcactgaaaaaagggttcaaacatggagaattaacaaagcgaccacaacttatgtatttcgcatagggtgtagtacacaaggatcagcatcataatctctgtaactagaagaaaatatacaccaactgttctttttactaggagaatatacatcgattgttctattcatgcagggctacttatatacacaaatgattaactcaaaacctggaaggaattttcataaagtacattattgagtggatctgtcatactcaacatgagtttcaagcttgttgccatcaatcgatcgttcatttcgccgtgtcgctggcgtttgtgtcgtccgttggccacgctacagtttccattaacctctgacgcattatctccagattctcgttggaaatcttctcgtacatttttgcatggtcacatttctgcattgatgaagaggtaactaattaaataatttatgcatcaaagatgtctcaaattactctggaatatctcactcttttttattaccttgatccatttgctgtacaagtggagtcgtgtgatcatcactctctctgccaaatcttgcctctcctgtgcatacgaagtcaaattaattagagaatgaaccttggcacaatgctgaacatcatatttatttttctccaaattgcttagtaacaagatgcaaaaaagatacctttgcgagtgcgatgaggaaatgtttgccctcctttggatcgttaaccacgacgtagctgacaaaaacgtaagtgttcttattttagacactaaggatgcagattgtaactgacgccaacattaacctattctacttagatttcatttcaacatagcacaatatatcaatgtgagattttcttgcaatggggtgacttacttatacagccaagtataagctggcgggttcatttcatacaactggtggagcaccgtgcttgtggccttgtaagtgaagtaattcatgatttcctgcaaaatggagagaacaatcttcagagttccatgcaatctaaacccaattaactttgcagttagagaaaattaaccattatattgctgccatttacagatagcgtgccgattatcccctgccggttaaaaaaaagaaaatcgaagtcagtagtgtacacgcaccgtgtgcacgtcttcgaacccctcctcgtactgcccggcgaactcgtccacgatgacgaggccgcggcggccgggcctcctccccctccgccgcgccgcccgcgccaccgtgcgccgccgcctcaccccgacgacgacgccgcgcgaccacggcaatggcgccgcgcggcacgcggaggaggatgaggaggaggagggaaggcagacgaccgcggcggccatccgcgcgacggcagccatcggcggcgcccgcgaaggagagctagagatactttttcctcccgacgatgcgacgatgcgagccgcggcggggttctggataggtagcagcggtggattttttttgctggcgctttggct
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| CDS seq | atggctgccgtcgcgcggatggccgccgcggtcgtctgccttccctcctcctcctcatcctcctccgcgtgccgcgcggcgccattgccgtggtcgcgcggcgtcgtcgtcggggtgaggcggcggcgcacggtggcgcgggcggcgcggcggagggggaggaggcccggccgccgcggcctcgtcatcgtggacgagttcgccgggcagtacgaggaggggttcgaagacgtgcacacggaaatcatgaattacttcacttacaaggccacaagcacggtgctccaccagttgtatgaaatgaacccgccagcttatacttggctgtataactacgtcgtggttaacgatccaaaggagggcaaacatttcctcatcgcactcgcaaaggagaggcaagatttggcagagagagtgatgatcacacgactccacttgtacagcaaatggatcaagaaatgtgaccatgcaaaaatgtacgagaagatttccaacgagaatctggagataatgcgtcagaggttaatggaaactgtagcgtggccaacggacgacacaaacgccagcgacacggcgaaatga
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| Protein seq | MAAVARMAAAVVCLPSSSSSSSACRAAPLPWSRGVVVGVRRRRTVARAARRRGRRPGRRGLVIVDEFAGQYEEGFEDVHTEIMNYFTYKATSTVLHQLYEMNPPAYTWLYNYVVVNDPKEGKHFLIALAKERQDLAERVMITRLHLYSKWIKKCDHAKMYEKISNENLEIMRQRLMETVAWPTDDTNASDTAK |
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| Function | Chaperonin-like RbcX protein 2, chloroplastic [UniProtKB/Swiss-Prot:Q8L9X2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0019780 | OsLima_07g0019780.01 | Chr07 | 23871520 | 23873040 | - | NAM | ||
| CDS seq | atggctgccgtcgcgcggatggccgccgcggtcgtctgccttccctcctcctcctcatcctcctccgcgtgccgcgcggcgccattgccgtggtcgcgcggcgtcgtcgtcggggtgaggcggcggcgcacggtggcgcgggcggcgcggcggagggggaggaggcccggccgccgcggcctcgtcatcgtggacgagttcgccgggcagtacgaggaggggttcgaagacgtgcacacggaaatcatgaattacttcacttacaaggccacaagcacggtgctccaccagttgtatgaaatgaacccgccagcttatacttggctgtataactacgtcgtggttaacgatccaaaggagggcaaacatttcctcatcgcactcgcaaaggagaggcaagatttggcagagagagtgatgatcacacgactccacttgtacagcaaatggatcaagaaatgtgaccatgcaaaaatgtacgagaagatttccaacgagaatctggagataatgcgtcagaggttaatggaaactgtagcgtggccaacggacgacacaaacgccagcgacacggcgaaatga
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| Protein seq | MAAVARMAAAVVCLPSSSSSSSACRAAPLPWSRGVVVGVRRRRTVARAARRRGRRPGRRGLVIVDEFAGQYEEGFEDVHTEIMNYFTYKATSTVLHQLYEMNPPAYTWLYNYVVVNDPKEGKHFLIALAKERQDLAERVMITRLHLYSKWIKKCDHAKMYEKISNENLEIMRQRLMETVAWPTDDTNASDTAK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0019780 | OsLima_07g0019780.02 | Chr07 | 23871573 | 23871985 | - | IsoSeq | ||
| CDS seq | atgtatattctcctagtaaaaagaacagttggtgtatattttcttctagttacagagattatgatgctgatccttgtgtactacaccctatgcgaaatacataagttgtggtcgctt |
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| Protein seq | MYILLVKRTVGVYFLLVTEIMMLILVYYTLCEIHKLWSL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.619830 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0569600 | RBH | 15.744482 | 12.412558 | 0.665653 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g38230 | RBH | 9.538931 | 7.564503 | 0.155788 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0569600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0020140 | RBH | 5.538926 | 0.842912 | 2.603699 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0020090 | RBH | 1.492435 | 0.0 | 1.568866 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0020020 | SBH | 2.671286 | 0.000000 | 2.447297 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0019930 | RBH | 2.994949 | 0.061450 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0019980 | RBH | 77.810890 | 0.000000 | 10.513042 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0374700 | SBH | 20.124193 | 11.265291 | 1.2987895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0020450 | RBH | 2.487628 | 0.205990 | 0.228414 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0387300 | RBH | 48.7486935 | 8.7757435 | 2.8071065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0038940 | RBH | 3.537743 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0019880 | RBH | 7.429455 | 1.382445 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0019830 | RBH | 77.821808 | 19.156631 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0020000 | RBH | 8.772220 | 0.579345 | 1.989227 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0019760 | RBH | 4.418089 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G019670 | SBH | 1.329423 | 0.0 | 0.912160 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0019770 | RBH | 10.653741 | 0.000000 | 8.375000 |
