Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0038940 | OGI:03094450 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:36946151-36947993 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtagctgcctcctgagcctcacaaaatttggttggtcagagttgcatcccggccactggccagccacgacgacgaagcggcgagaagccgaggccaaactacaattcaacacctcttcctcttcttcttcttgctgcttcttcttcttcttctgccacttggttgctatataCACcaagctcgatcacgaaactatcttagctgctgctgctgctgctgcgttggagaagaagagagtggcagggtgaggatggccggggtgcaggtgatgccggcggtgggggcggtggcgacggcggaagggagctgcagggcggcggggcagaggaggggccgcggcgtgagcagcttgttcgccggagactggaggcggcggcctcgccgggcggcgtgcacggccagggtcaggggcaggaggcagcagcagcagcagcagggcctcgccgtcgtctgcaacctcggtggcacctacgatgaaggtttcgaggacatccacgtggtaattaacttatcagacgtagctaaaatttaaaattttagttttaatcttaaagttgattttgaattttttttttaagtcgtaaagaatatatgtgtatataacaaagttttatcgaaaaattattcctttcgctattaagcgttgcggcttataatcattccccacatgccgaatctaattaattaatccatgttagcagatcctaacgtaaagagttgaagttctactgctgatatataaaatgctgtgattttgatgagattttcatggttgggatgagtagaggagatcgattgatttggttttttgttcattcttgtttgcgcagcaactgattaatgtgttcacctacaaagccgtcaagaccgtgctcacgcagctctacgaaatgaacccaccaagctaccgatggttatacaagtaagccacccatttattccacaaatcaatcagcaaaatccctgtcagattactgaatttgtgttcttgcttctcattggtttcagcttcgttgctgtaaacaagcctaccgatggcaaagtgttccttcgtgctcttggaaaggtaaatatataaactactccacagttgtttaaactttcgaacgatacaaatgtaaactgaaaactaaagaaaaattgcacacgcatgaatgttcattttggtttataggagaagcaggagcttgcagagcgagtgatgataactaggcttcacttgtacagcaaatggatcaaggtgattcctttttggtactcttagataatccatcacaaagctctgaagtttgtaaccaaatgagattctggttttgatctttcagaaatgtgaccatgcgatgatgtacgagaggatatctgacgagaacctggcgttgatgcgagagcggctcatggagacggtcatctggccaacagacgacaccaacactgagaagattggctgaaaaataatgcctgatctgtctgcctgacgcatacacttctttttgagttgctcaacttaattaaactttagctcgttaggtagagcattctaaattattcctgctcgatcgagtccgatgtatatgtatgtatattaagtgtacaattaatgtaccaagccagtgtaatgggtacaaattcaagatgcattcagggttaagtatagattaagatctagctgatagcgtgtggtttagtttggtcatttggtgagtgaagtgaagaagctgcaaactgtttggtccatttcatcgacagtgtacaagtacaacgtagcaactaatacttgtaatttgggtcaagttcgtcgacacagtttatttcatgagttacaactcttgctgttggttctaga
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| CDS seq | atggccggggtgcaggtgatgccggcggtgggggcggtggcgacggcggaagggagctgcagggcggcggggcagaggaggggccgcggcgtgagcagcttgttcgccggagactggaggcggcggcctcgccgggcggcgtgcacggccagggtcaggggcaggaggcagcagcagcagcagcagggcctcgccgtccaactgattaatgtgttcacctacaaagccgtcaagaccgtgctcacgcagctctacgaaatgaacccaccaagctaccgatggttatacaacttcgttgctgtaaacaagcctaccgatggcaaagtgttccttcgtgctcttggaaaggagaagcaggagcttgcagagcgagtgatgataactaggcttcacttgtacagcaaatggatcaagaaatgtgaccatgcgatgatgtacgagaggatatctgacgagaacctggcgttgatgcgagagcggctcatggagacggtcatctggccaacagacgacaccaacactgagaagattggctga
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| Protein seq | MAGVQVMPAVGAVATAEGSCRAAGQRRGRGVSSLFAGDWRRRPRRAACTARVRGRRQQQQQQGLAVQLINVFTYKAVKTVLTQLYEMNPPSYRWLYNFVAVNKPTDGKVFLRALGKEKQELAERVMITRLHLYSKWIKKCDHAMMYERISDENLALMRERLMETVIWPTDDTNTEKIG |
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| Function | Chaperonin-like RbcX protein 2, chloroplastic [UniProtKB/Swiss-Prot:Q8L9X2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0038940 | OsLima_03g0038940.01 | Chr03 | 36946151 | 36947993 | + | NAM | ||
| CDS seq | atggccggggtgcaggtgatgccggcggtgggggcggtggcgacggcggaagggagctgcagggcggcggggcagaggaggggccgcggcgtgagcagcttgttcgccggagactggaggcggcggcctcgccgggcggcgtgcacggccagggtcaggggcaggaggcagcagcagcagcagcagggcctcgccgtccaactgattaatgtgttcacctacaaagccgtcaagaccgtgctcacgcagctctacgaaatgaacccaccaagctaccgatggttatacaacttcgttgctgtaaacaagcctaccgatggcaaagtgttccttcgtgctcttggaaaggagaagcaggagcttgcagagcgagtgatgataactaggcttcacttgtacagcaaatggatcaagaaatgtgaccatgcgatgatgtacgagaggatatctgacgagaacctggcgttgatgcgagagcggctcatggagacggtcatctggccaacagacgacaccaacactgagaagattggctga
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| Protein seq | MAGVQVMPAVGAVATAEGSCRAAGQRRGRGVSSLFAGDWRRRPRRAACTARVRGRRQQQQQQGLAVQLINVFTYKAVKTVLTQLYEMNPPSYRWLYNFVAVNKPTDGKVFLRALGKEKQELAERVMITRLHLYSKWIKKCDHAMMYERISDENLALMRERLMETVIWPTDDTNTEKIG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0038940 | OsLima_03g0038940.02 | Chr03 | 36946283 | 36947957 | + | IsoSeq | ||
| CDS seq | tgcttcttcttcttcttctgccacttggttgctatataCACcaagctcgatcacgaaactatcttagctgctgctgctgctgctgcgttggagaagaagagagtggca |
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| Protein seq | CFFFFFCHLVAIYTKLDHETILAAAAAAALEKKRVA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr03 | 36946598 | 36946981 | + | OsLima_03g0038940.02 | OsLima_03g0038940.02,OsLima_03g0038940.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.537743 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0807900 | RBH | 7.688314 | 12.009572 | 10.441941 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g59320 | RBH | 4.234738 | 6.673625 | 2.225663 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0807900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0039020 | RBH | 0.868898 | 0.0 | 3.804241 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0038690 | RBH | 2.684281 | 0.000000 | 3.412251 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0038750 | RBH | 1.808262 | 0.0 | 6.465724 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0039040 | RBH | 0.184767 | 0.051080 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0038600 | RBH | 89.867157 | 0.0 | 9.808132 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0576400 | RBH | 8.784262 | 0.8896 | 31.9352435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0038360 | RBH | 0.193600 | 0.214435 | 5.338725 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0578900 | RBH | 84.0678935 | 2.82882 | 0.0908165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0019780 | RBH | 3.619830 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0038900 | RBH | 6.879166 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0038530 | RBH | 32.193111 | 5.558315 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0038570 | RBH | 2.174240 | 0.0 | 5.492545 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0038620 | RBH | 0.475749 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G038390 | RBH | 0.353131 | 0.0 | 1.667623 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0038160 | RBH | 2.828718 | 0.0 | 20.883673 |
