Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0019680 | OGI:07064000 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:23834672-23836121 | ||||||||
| Gene Symbol | FOR1, OsFOR1, Osfor1, OsPGIP5, PGIP5, PGIP | ||||||||||
| DNA seq | caagaacgaaaggcaaattatatcaaacacttatcatttcgatgatacattagggcgatccataacgtacattcacaatacacacacttgcatcatcatcatcatcgtactccatacacggtacacgtacgcacacgtacacacggctccctcgtttcgtacaatctgaaggagagtcgaccacgcacgcgtgcaggcactctaccttggttacaatttgtactaacgtaaacccgcccagtaccctgcacggctgcacccgtcgtaccgtgtactacacggccacgtccccgtacgcgaaaaaacaccaaacacgtataccgttacgcaccccgggctccaccttacgtggcagcatcagctcgccggcggtgatggatggatggatgctcacgattggtggcacccgccgagcggggcgccgccggcgcactggttgtgctcgtacggcttgcagccgtggcggatgacgccgtgcagcctcgggagcgggccgcagaggcggttgtagctgaggtccagcgtctgcagcgtggagagcgcggcgagggagcgtggcacggtgcccctgatgcggttgtggctgaggtccaggtaggtgagctccggcgggaagacgagcttgctgaggtcgaagtcgaggtcgttccacgagaggtccaccttgccgatgggccggccggtggcgaagaggaaggaggcgtcgccggtgaggcggttgtgcgagaggtcgacggtgttgatctcgtcctgcgcgtcgtcgcgcgggatcgggccggtgagctggttgtaggagaggatcagcgacctgaactgcccctgcacgagccccgccgggatgcaacccgtcagcttgttgctgcggaggtcaagcgaccggaggttcgggaggtcggagaaggagttcgggatggggccggtcaggctgttgtgggagaggtcgacggagtcgaggctgcggatccgcgcgagcgagtccgggatgacgccggagacgttggtgtgggagatggtgaggaactggaggttggagagcgcggtgaggcacgccgggatggggccggagaggcccgggaggcggaacagcgacagcgacatgagcgccgtcagccccgccacggcggacgggatctggccgcggacgtcgttggcgccgtcgatgaagacgttgttcacgcgcccggcctcgtcgcaccggacgtggtcccactcgcagcagtccgccgacgccagggaccacgtcgacagcgtcgccgggtttcccagcgactgcttcactctcatcagcgcctgcttgtcgctcggcgggcatcgcaccgccctcgccggcgccgccgcgacggccaccgccagcaagacggcgagcatgaaagaggcggtggacgccattgtatctacctgaactaggctcgtgtggctggagctggcttgagtgagtgtgagtgagtgc
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| CDS seq | atggcgtccaccgcctctttcatgctcgccgtcttgctggcggtggccgtcgcggcggcgccggcgagggcggtgcgatgcccgccgagcgacaagcaggcgctgatgagagtgaagcagtcgctgggaaacccggcgacgctgtcgacgtggtccctggcgtcggcggactgctgcgagtgggaccacgtccggtgcgacgaggccgggcgcgtgaacaacgtcttcatcgacggcgccaacgacgtccgcggccagatcccgtccgccgtggcggggctgacggcgctcatgtcgctgtcgctgttccgcctcccgggcctctccggccccatcccggcgtgcctcaccgcgctctccaacctccagttcctcaccatctcccacaccaacgtctccggcgtcatcccggactcgctcgcgcggatccgcagcctcgactccgtcgacctctcccacaacagcctgaccggccccatcccgaactccttctccgacctcccgaacctccggtcgcttgacctccgcagcaacaagctgacgggttgcatcccggcggggctcgtgcaggggcagttcaggtcgctgatcctctcctacaaccagctcaccggcccgatcccgcgcgacgacgcgcaggacgagatcaacaccgtcgacctctcgcacaaccgcctcaccggcgacgcctccttcctcttcgccaccggccggcccatcggcaaggtggacctctcgtggaacgacctcgacttcgacctcagcaagctcgtcttcccgccggagctcacctacctggacctcagccacaaccgcatcaggggcaccgtgccacgctccctcgccgcgctctccacgctgcagacgctggacctcagctacaaccgcctctgcggcccgctcccgaggctgcacggcgtcatccgccacggctgcaagccgtacgagcacaaccagtgcgccggcggcgccccgctcggcgggtgccaccaatcgtga
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| Protein seq | MASTASFMLAVLLAVAVAAAPARAVRCPPSDKQALMRVKQSLGNPATLSTWSLASADCCEWDHVRCDEAGRVNNVFIDGANDVRGQIPSAVAGLTALMSLSLFRLPGLSGPIPACLTALSNLQFLTISHTNVSGVIPDSLARIRSLDSVDLSHNSLTGPIPNSFSDLPNLRSLDLRSNKLTGCIPAGLVQGQFRSLILSYNQLTGPIPRDDAQDEINTVDLSHNRLTGDASFLFATGRPIGKVDLSWNDLDFDLSKLVFPPELTYLDLSHNRIRGTVPRSLAALSTLQTLDLSYNRLCGPLPRLHGVIRHGCKPYEHNQCAGGAPLGGCHQS |
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| Function | Polygalacturonase inhibitor 1 [UniProtKB/Swiss-Prot:Q8GT95] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0019680 | OsLima_07g0019680.01 | Chr07 | 23834672 | 23836121 | - | NAM | ||
| CDS seq | atggcgtccaccgcctctttcatgctcgccgtcttgctggcggtggccgtcgcggcggcgccggcgagggcggtgcgatgcccgccgagcgacaagcaggcgctgatgagagtgaagcagtcgctgggaaacccggcgacgctgtcgacgtggtccctggcgtcggcggactgctgcgagtgggaccacgtccggtgcgacgaggccgggcgcgtgaacaacgtcttcatcgacggcgccaacgacgtccgcggccagatcccgtccgccgtggcggggctgacggcgctcatgtcgctgtcgctgttccgcctcccgggcctctccggccccatcccggcgtgcctcaccgcgctctccaacctccagttcctcaccatctcccacaccaacgtctccggcgtcatcccggactcgctcgcgcggatccgcagcctcgactccgtcgacctctcccacaacagcctgaccggccccatcccgaactccttctccgacctcccgaacctccggtcgcttgacctccgcagcaacaagctgacgggttgcatcccggcggggctcgtgcaggggcagttcaggtcgctgatcctctcctacaaccagctcaccggcccgatcccgcgcgacgacgcgcaggacgagatcaacaccgtcgacctctcgcacaaccgcctcaccggcgacgcctccttcctcttcgccaccggccggcccatcggcaaggtggacctctcgtggaacgacctcgacttcgacctcagcaagctcgtcttcccgccggagctcacctacctggacctcagccacaaccgcatcaggggcaccgtgccacgctccctcgccgcgctctccacgctgcagacgctggacctcagctacaaccgcctctgcggcccgctcccgaggctgcacggcgtcatccgccacggctgcaagccgtacgagcacaaccagtgcgccggcggcgccccgctcggcgggtgccaccaatcgtga
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| Protein seq | MASTASFMLAVLLAVAVAAAPARAVRCPPSDKQALMRVKQSLGNPATLSTWSLASADCCEWDHVRCDEAGRVNNVFIDGANDVRGQIPSAVAGLTALMSLSLFRLPGLSGPIPACLTALSNLQFLTISHTNVSGVIPDSLARIRSLDSVDLSHNSLTGPIPNSFSDLPNLRSLDLRSNKLTGCIPAGLVQGQFRSLILSYNQLTGPIPRDDAQDEINTVDLSHNRLTGDASFLFATGRPIGKVDLSWNDLDFDLSKLVFPPELTYLDLSHNRIRGTVPRSLAALSTLQTLDLSYNRLCGPLPRLHGVIRHGCKPYEHNQCAGGAPLGGCHQS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.057134 | 0.418719 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0568700 | RBH | 0.0 | 0.0 | 60.529667 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g38130 | RBH | 0.0 | 0.0 | 15.506603 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0568700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0020060 | RBH | 0.0 | 5.403813 | 42.119095 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0019980 | RBH | 0.165269 | 10.511689 | 33.546173 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0019940 | RBH | 0.0 | 40.653687 | 78.780411 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0019830 | RBH | 0.0 | 4.134935 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0019880 | RBH | 0.0 | 207.617828 | 60.033909 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0374100 | RBH | 2.925548 | 5.930071 | 348.5342255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0020350 | RBH | 0.0 | 8.106092 | 15.667250 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0386500 | RBH | 5.74939 | 0.3493415 | 39.4731045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004550 | SBH | 0.022579 | 0.127643 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0019780 | RBH | 0.0 | 76.210762 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0019730 | RBH | 0.0 | 67.915291 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0019900 | RBH | 0.124216 | 5.104231 | 20.696577 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0019690 | RBH | 0.0 | 39.271572 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G019600 | RBH | 0.0 | 61.648708 | 14.588824 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0019690 | RBH | 0.327757 | 21.800905 | 56.933651 |
