Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0018860 | OGI:07058990 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:23002089-23004584 | ||||||||
| Gene Symbol | RLCK239, OsRLCK239 | ||||||||||
| DNA seq | ctagctcccagctaccaattggttgcaaccagaccattctgttgagtaacctgttgagtaaccagagcttccatcaatcaaagatgttggcctaggtgcaggagccggcagagagcaagtagcgtcgctgttaagcaaaaccatgacatccgccattgtaggtctatctacagggttttgctggacacataggagtccgatgttgatgcattttaccacctcagcctcattgtagtttcttcccaaggaatggtcgatcatctctgctgttgtcccctcttcccagtgcctccatacctagcaatagtcacaaatatgtatgtcttcagcagtcagtagttattacgatagacatgtgcggctatacacaaatacgcaaatattgcaatgcaaagcaatatcatgaattcctatgtgaactaccggggatactcactatgctcaatatatctacaccattttgctcagagaaatatggcccactgttccttctttggcccgtcactatctctattacgagaatgccgaaactgaacacgtctgattttgtagagtactgcccgcacatcacgtactcaggaggcatgtaaccgctgcatccacaatgatgattgtattactttgctagttaatataagcataaaaatataaagtattccatcaacttaattacaatgtcccagcaatgcggcttgtgacttctcgagtttggtcctgctcgaagagcttggcgaggccaaagtccccaatcttagggttcatgtcagcatctagcaaaatattgcttgccttcatatcacggtggacgatcttcttctgagagtcctggtgaagatattggagtccccgagcggtaccttctatgatcttaaatcgtgtggcccagtctaaccgtttcctttgctctgtatcttttttcaccaaatgttagaaaagtcactattattggtggagtgaaatgattacaggagtaacaaatgatcaaagataatgctaatagtaccaaaaagaagggtgtcgaggcttttgtttggcatatactcatagacgagcagtctctcccctttttcgaggcaaaacccaacgagacgaacaagattcttgtgatgaagtttggcgacaagaattagctcatttttcagctcttgtagcccctggtgagagtccttggccatcctcttcacggccacttcttgcccggacagtagtccctaaataatttagcttagtatcttattttcttactaacttatacatggagacatggacagaaatacaaaattttgtaatgggttaaaaacctaataatataacataactaattttaaaggttactataaaaatcaaagtttgtatgtgatttctttatagaaattatagaaaagtaatcttaatgaaacataacctccctaaaaggaattggagaggacacaagcaatatagtttctacaatgtgcaagaaacaattcaacacctattttgattgccatgttgctcattttgcacgacaatgtgttcttctccttacaatatgcctcctcctgatgtgccaaaaaaatttagtaactcacttcgggagtgcctagacgcttgaaattcgtcaatttggcattgagaaaatgataaaagtcttaataacaaaaaaaatgttgtctaactctgcaatgcaggttatctgtccaactggttcaaatgttggtctatgttattacgatgggtggagcagtatgttatgcgcaaggatatgctatatattcttagagctagttaccgaaggtcttttactttctatgtgtggcctaatacatataggcttacttgttgctagaatttgtgttttttaagtatatcgattggttttctttcaaaggtatttgaggatttgtctcaccacctatgtcttttttaagttaaagaacttgttagctaattattatgtggctaaagtcgaggatgtaatatattttcactattaataaaatactataaataatctgcactaatagtttttttttctaaaacaaggggcaggagcttcgccatttgtttcaagaggacacaaaatttgcgactcactcacaattgagcagtagtgcattcatacttctagtcattaatttagaagttatattttgaccattgccaattcacaccatcaaatcaacatttttttctcaaaagaaatcaacaatgattcagaagtagacgtaacgactacgggcctactacctgataaacttcaccgaatcccccctcaccaatcttcttgcttttgtggaagttatcggttgccacttgcagcgatgccagagataacaggcctgacttgacactttcaaaatcctcagttgtatcagctggcaaatttgcatgaatttgacgaaatgttaatggacgctggtggtataagaatgttaacaagaatatatatgccaaaattatgtgcagaggactcacgtctggagtatctcgccaaacttctcttcttacgcacat
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| CDS seq | atgtgcgtaagaagagaagtttggcgagatactccagacgtgagtcctctgcacataattttggcatatatattcttgttaacattcttataccaccagcgtccattaacatttcgtcaaattcatgcaaatttgccagctgatacaactgaggattttgaaagtgtcaagtcaggcctgttatctctggcatcgctgcaagtggcaaccgataacttccacaaaagcaagaagattggtgaggggggattcggtgaagtttatcagggactactgtccgggcaagaagtggccgtgaagaggatggccaaggactctcaccaggggctacaagagctgaaaaatgagctaattcttgtcgccaaacttcatcacaagaatcttgttcgtctcgttgggttttgcctcgaaaaaggggagagactgctcgtctatgagtatatgccaaacaaaagcctcgacacccttctttttggtactattagcattatctttgatcatttgttactcctcggttacatgcctcctgagtacgtgatgtgcgggcagtactctacaaaatcagacgtgttcagtttcggcattctcgtaatagagatagtgacgggccaaagaaggaacagtgggccatatttctctgagcaaaatggtgtagatatattgagcatagtatggaggcactgggaagaggggacaacagcagagatgatcgaccattccttgggaagaaactacaatgaggctgaggtggtaaaatgcatcaacatcggactcctatgtgtccagcaaaaccctgtagatagacctacaatggcggatgtcatggttttgcttaacagcgacgctacttgctctctgccggctcctgcacctaggccaacatctttgattgatggaagctctggttactcaacaggttactcaacagaatggtctggttgcaaccaattggtagctgggagctag
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| Protein seq | MCVRREVWRDTPDVSPLHIILAYIFLLTFLYHQRPLTFRQIHANLPADTTEDFESVKSGLLSLASLQVATDNFHKSKKIGEGGFGEVYQGLLSGQEVAVKRMAKDSHQGLQELKNELILVAKLHHKNLVRLVGFCLEKGERLLVYEYMPNKSLDTLLFGTISIIFDHLLLLGYMPPEYVMCGQYSTKSDVFSFGILVIEIVTGQRRNSGPYFSEQNGVDILSIVWRHWEEGTTAEMIDHSLGRNYNEAEVVKCINIGLLCVQQNPVDRPTMADVMVLLNSDATCSLPAPAPRPTSLIDGSSGYSTGYSTEWSGCNQLVAGS |
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| Function | Putative cysteine-rich receptor-like protein kinase 12 [UniProtKB/Swiss-Prot:O65472] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0018860 | OsLima_07g0018860.01 | Chr07 | 23002089 | 23004584 | - | NAM | ||
| CDS seq | atgtgcgtaagaagagaagtttggcgagatactccagacgtgagtcctctgcacataattttggcatatatattcttgttaacattcttataccaccagcgtccattaacatttcgtcaaattcatgcaaatttgccagctgatacaactgaggattttgaaagtgtcaagtcaggcctgttatctctggcatcgctgcaagtggcaaccgataacttccacaaaagcaagaagattggtgaggggggattcggtgaagtttatcagggactactgtccgggcaagaagtggccgtgaagaggatggccaaggactctcaccaggggctacaagagctgaaaaatgagctaattcttgtcgccaaacttcatcacaagaatcttgttcgtctcgttgggttttgcctcgaaaaaggggagagactgctcgtctatgagtatatgccaaacaaaagcctcgacacccttctttttggtactattagcattatctttgatcatttgttactcctcggttacatgcctcctgagtacgtgatgtgcgggcagtactctacaaaatcagacgtgttcagtttcggcattctcgtaatagagatagtgacgggccaaagaaggaacagtgggccatatttctctgagcaaaatggtgtagatatattgagcatagtatggaggcactgggaagaggggacaacagcagagatgatcgaccattccttgggaagaaactacaatgaggctgaggtggtaaaatgcatcaacatcggactcctatgtgtccagcaaaaccctgtagatagacctacaatggcggatgtcatggttttgcttaacagcgacgctacttgctctctgccggctcctgcacctaggccaacatctttgattgatggaagctctggttactcaacaggttactcaacagaatggtctggttgcaaccaattggtagctgggagctag
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| Protein seq | MCVRREVWRDTPDVSPLHIILAYIFLLTFLYHQRPLTFRQIHANLPADTTEDFESVKSGLLSLASLQVATDNFHKSKKIGEGGFGEVYQGLLSGQEVAVKRMAKDSHQGLQELKNELILVAKLHHKNLVRLVGFCLEKGERLLVYEYMPNKSLDTLLFGTISIIFDHLLLLGYMPPEYVMCGQYSTKSDVFSFGILVIEIVTGQRRNSGPYFSEQNGVDILSIVWRHWEEGTTAEMIDHSLGRNYNEAEVVKCINIGLLCVQQNPVDRPTMADVMVLLNSDATCSLPAPAPRPTSLIDGSSGYSTGYSTEWSGCNQLVAGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0537400 | SBH | 0.000000 | 0.0 | 0.473961 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g36980 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0537400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018310 | SBH | 0.0 | 18.130133 | 0.898002 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0019150 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0019100 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0018060 | RBH | 0.0 | 0.679471 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018190 | SBH | 0.087802 | 5.833766 | 0.938656 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0351400 | SBH | 0.309316 | 19.3094625 | 2.687566 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018720 | SBH | 0.000000 | 0.989914 | 0.178914 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0361900 | RBH | 0.3760645 | 17.520449 | 0.218801 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017940 | SBH | 0.026354 | 0.135489 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0018110 | SBH | 0.0 | 12.922581 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0018880 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018310 | SBH | 0.0 | 0.519603 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0018120 | SBH | 0.047525 | 8.972060 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017990 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0018080 | SBH | 0.086080 | 8.247792 | 0.0 |
