Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0018700 | OGI:07061800 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:22898237-22900973 | ||||||||
| Gene Symbol | SDRLK-41 | ||||||||||
| DNA seq | cctgaattgaagcacatgttgggactctatcaaatgttaacatgtgcagtcaggcctcctcataggttaaacataaaaattctaatacatggtggatggctcaatgtgttagttcgtgatagctcaattatgtgctattaatatacagaaggcatggaactacagaactacagaaaagcatagcatatgtacaacatgagtcactcatattactctcaaatacgtaaatgtctttccctaatcaaattcaggattttctgatttatgtgctctgaaattgtgaaccacctgaagtagaactctttgtctgcgaagaagctgtgctattatgcatctgcgaagtttgacttgatgaaacatctgagaaaaaatttatgacatcagggctttcatcaagaaccttcagtgaccttggaacaggaggcatgttgacatcaaggaatccctctaaaatttggacgacctgacccattgtaggtctgccattttcatcatcttggatacaccagcaggcaaccttgcaagcttttgtgagctcatcagcactggcatctccattcaacctggggtctaacaaggtctgcacatcaccttcctggagtttgtttacagccaaagttgggaagaaagaggactttccctcctcccctagatcagcattccttctgcctgatatgagttcgaagagcatcatgccatagctgaagacatctgccttaggagtaatcggcacaccactgatccactcaggcgcaaggtaaccccttgtccctctcattgttgtcaaaacacggctgaaatcccgccctaagagctttgctagaccaaagtcagacactttgggtacaaatgactcatccaaaagtatgttatctggcttaacatcacagtgtattatgcaatccctacatttttcatgcaggtaatttaggccccttgctgttccaagtgcaatttgataccttatggcccagttcagtgccgttgtctcaccatggaacagctgcaattccagggagccctttggcatgtactcatagacaagcagtcttcttgatccttcagagcagaaaccaagtaggcgaaccagattgacatgttggatggtcccgatggtgcttacctcagcacggaattgcttctccccctggctcagtccatcaagcctcttcactgcaatggctgttgaatctgggagcttccctttaaatactgtgccaaaggcacctccacccagcttctctgagaagttgctggtgacatgctgcagatcactgtaccggaaggcaatcagtgcgccccctgtagtcttggatatgcgaagagtcctgtctcggcggcatttctggaatacgatgaacaacacaattgcaaggattatcaaagctgcagcaactccacctacaactgcaccaatgatcattttcttgctctttttagagtctggaagttcagacgctgcaagcctgaggaagagtgtgcctcctccattcccattgtattggtcttggaggttaatcaagtccccatgccaaacaaagcagccactactattgtaagtgtaagcattacaggagcaattattcaggcaagcaacctgacaggcctgagaactagcggccactgcactctgagcattatcaggtagcctcacactaaccatggaatagaacttatcaggctgagtctgtgcagagcttgagttggtctggcactgcaacggtacgtttctcttgcacccaccagtaaaatcctggaggtcccaatcactctgaaacttctggctgaaccccttgatgcagttgcagaacggcaggacattgaggttgcaacttccatatgcgccgcagagcccgtacacctcacactgcgtccgtggctgggaccagaacaagatccaattctccgaggctggtacccatgtccactgcttgatctgcccattcacatcaatggtgaaccgcgagatgatcgagtcatccttcatggagtatatgaagtagctctccgagacattgttaatgaaccggaagttgtagttgtagccggccgtcatctcgggcacaagactgaagatattaccgttccaagggccgctggtccagtaagtgatggagtcgttccactggatgaagtactgcgttgtgccgttgggatccagctcaagggagaacagcccaggggacgggtttgcattgttcctccatggcacaagccgctggctcacaccagtggtcttgttcagccccagcttgccgcccggaagccaggtgtttgtcggatgatctatgctcctccagtagactatggatgaattggtggcatccatgaggtcgaggctaccgccgtcctggatgacggcaacggtggagttggaggccacacttacgttggtcgaccacagctgcctgttcttggattgatcaaggaggacaagattgccatcgctgccgatggacaaggatgcggtggtcgggtcagacaccggcacgtcgctgttggccgtccacaccgtcgtctgcaacggtatgttgttgtaccatatagctatgtagtagttgccggtgccggaggcggtgttgttaccttgtggcggggtgtagaatccaagggcgaacctgccgcccttggagacgatcttctgcgtcccggacagcggcgtggtggagttgatggtgtccactgcggtgcagagaaagatttggctgaagaggaggaggaagaagacaggagccat
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| CDS seq | atggctcctgtcttcttcctcctcctcttcagccaaatctttctctgcaccgcagtggacaccatcaactccaccacgccgctgtccgggacgcagaagatcgtctccaagggcggcaggttcgcccttggattctacaccccgccacaaggtaacaacaccgcctccggcaccggcaactactacatagctatatggtacaacaacataccgttgcagacgacggtgtggacggccaacagcgacgtgccggtgtctgacccgaccaccgcatccttgtccatcggcagcgatggcaatcttgtcctccttgatcaatccaagaacaggcagctgtggtcgaccaacgtaagtgtggcctccaactccaccgttgccgtcatccaggacggcggtagcctcgacctcatggatgccaccaattcatccatagtctactggaggagcatagatcatccgacaaacacctggcttccgggcggcaagctggggctgaacaagaccactggtgtgagccagcggcttgtgccatggaggaacaatgcaaacccgtcccctgggctgttctcccttgagctggatcccaacggcacaacgcagtacttcatccagtggaacgactccatcacttactggaccagcggcccttggaacggtaatatcttcagtcttgtgcccgagatgacggccggctacaactacaacttccggttcattaacaatgtctcggagagctacttcatatactccatgaaggatgactcgatcatctcgcggttcaccattgatgtgaatgggcagatcaagcagtggacatgggtaccagcctcggagaattggatcttgttctggtcccagccacggacgcagtgtgaggtgtacgggctctgcggcgcatatggaagttgcaacctcaatgtcctgccgttctgcaactgcatcaaggggttcagccagaagtttcagagtgattgggacctccaggattttactggtgggtgcaagagaaacgtaccgttgcagtgccagaccaactcaagctctgcacagactcagcctgataagttctattccatggttagtgtgaggctacctgataatgctcagagtgcagtggccgctagttctcaggcctgtcaggttgcttgcctgaataattgctcctgtaatgcttacacttacaatagtagtggctgctttgtttggcatggggacttgattaacctccaagaccaatacaatgggaatggaggaggcacactcttcctcaggcttgcagcgtctgaacttccagactctaaaaagagcaagaaaatgatcattggtgcagttgtaggtggagttgctgcagctttgataatccttgcaattgtgttgttcatcgtattccagaaatgccgccgagacaggactcttcgcatatccaagactacagggggcgcactgattgccttccggtacagtgatctgcagcatgtcaccagcaacttctcagagaagctgggtggaggtgcctttggcacagtatttaaagggaagctcccagattcaacagccattgcagtgaagaggcttgatggactgagccagggggagaagcaattccgtgctgaggtaagcaccatcgggaccatccaacatgtcaatctggttcgcctacttggtttctgctctgaaggatcaagaagactgcttgtctatgagtacatgccaaagggctccctggaattgcagctgttccatggtgagacaacggcactgaactgggccataaggtatcaaattgcacttggaacagcaaggggcctaaattacctgcatgaaaaatgtagggattgcataatacactgtgatgttaagccagataacatacttttggatgagtcatttgtacccaaagtgtctgactttggtctagcaaagctcttagggcgggatttcagccgtgttttgacaacaatgagagggacaaggggttaccttgcgcctgagtggatcagtggtgtgccgattactcctaaggcagatgtcttcagctatggcatgatgctcttcgaactcatatcaggcagaaggaatgctgatctaggggaggagggaaagtcctctttcttcccaactttggctgtaaacaaactccaggaaggtgatgtgcagaccttgttagaccccaggttgaatggagatgccagtgctgatgagctcacaaaagcttgcaaggttgcctgctggtgtatccaagatgatgaaaatggcagacctacaatgggtcaggtcgtccaaattttagagggattccttgatgtcaacatgcctcctgttccaaggtcactgaaggttcttgatgaaagccctgatgtcataaattttttctcagatgtttcatcaagtcaaacttcgcagatgcataatagcacagcttcttcgcagacaaagagttctacttcaggtggttcacaatttcagagcacataa
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| Protein seq | MAPVFFLLLFSQIFLCTAVDTINSTTPLSGTQKIVSKGGRFALGFYTPPQGNNTASGTGNYYIAIWYNNIPLQTTVWTANSDVPVSDPTTASLSIGSDGNLVLLDQSKNRQLWSTNVSVASNSTVAVIQDGGSLDLMDATNSSIVYWRSIDHPTNTWLPGGKLGLNKTTGVSQRLVPWRNNANPSPGLFSLELDPNGTTQYFIQWNDSITYWTSGPWNGNIFSLVPEMTAGYNYNFRFINNVSESYFIYSMKDDSIISRFTIDVNGQIKQWTWVPASENWILFWSQPRTQCEVYGLCGAYGSCNLNVLPFCNCIKGFSQKFQSDWDLQDFTGGCKRNVPLQCQTNSSSAQTQPDKFYSMVSVRLPDNAQSAVAASSQACQVACLNNCSCNAYTYNSSGCFVWHGDLINLQDQYNGNGGGTLFLRLAASELPDSKKSKKMIIGAVVGGVAAALIILAIVLFIVFQKCRRDRTLRISKTTGGALIAFRYSDLQHVTSNFSEKLGGGAFGTVFKGKLPDSTAIAVKRLDGLSQGEKQFRAEVSTIGTIQHVNLVRLLGFCSEGSRRLLVYEYMPKGSLELQLFHGETTALNWAIRYQIALGTARGLNYLHEKCRDCIIHCDVKPDNILLDESFVPKVSDFGLAKLLGRDFSRVLTTMRGTRGYLAPEWISGVPITPKADVFSYGMMLFELISGRRNADLGEEGKSSFFPTLAVNKLQEGDVQTLLDPRLNGDASADELTKACKVACWCIQDDENGRPTMGQVVQILEGFLDVNMPPVPRSLKVLDESPDVINFFSDVSSSQTSQMHNSTASSQTKSSTSGGSQFQST |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0018700 | OsLima_07g0018700.01 | Chr07 | 22898237 | 22900973 | - | NAM | ||
| CDS seq | atggctcctgtcttcttcctcctcctcttcagccaaatctttctctgcaccgcagtggacaccatcaactccaccacgccgctgtccgggacgcagaagatcgtctccaagggcggcaggttcgcccttggattctacaccccgccacaaggtaacaacaccgcctccggcaccggcaactactacatagctatatggtacaacaacataccgttgcagacgacggtgtggacggccaacagcgacgtgccggtgtctgacccgaccaccgcatccttgtccatcggcagcgatggcaatcttgtcctccttgatcaatccaagaacaggcagctgtggtcgaccaacgtaagtgtggcctccaactccaccgttgccgtcatccaggacggcggtagcctcgacctcatggatgccaccaattcatccatagtctactggaggagcatagatcatccgacaaacacctggcttccgggcggcaagctggggctgaacaagaccactggtgtgagccagcggcttgtgccatggaggaacaatgcaaacccgtcccctgggctgttctcccttgagctggatcccaacggcacaacgcagtacttcatccagtggaacgactccatcacttactggaccagcggcccttggaacggtaatatcttcagtcttgtgcccgagatgacggccggctacaactacaacttccggttcattaacaatgtctcggagagctacttcatatactccatgaaggatgactcgatcatctcgcggttcaccattgatgtgaatgggcagatcaagcagtggacatgggtaccagcctcggagaattggatcttgttctggtcccagccacggacgcagtgtgaggtgtacgggctctgcggcgcatatggaagttgcaacctcaatgtcctgccgttctgcaactgcatcaaggggttcagccagaagtttcagagtgattgggacctccaggattttactggtgggtgcaagagaaacgtaccgttgcagtgccagaccaactcaagctctgcacagactcagcctgataagttctattccatggttagtgtgaggctacctgataatgctcagagtgcagtggccgctagttctcaggcctgtcaggttgcttgcctgaataattgctcctgtaatgcttacacttacaatagtagtggctgctttgtttggcatggggacttgattaacctccaagaccaatacaatgggaatggaggaggcacactcttcctcaggcttgcagcgtctgaacttccagactctaaaaagagcaagaaaatgatcattggtgcagttgtaggtggagttgctgcagctttgataatccttgcaattgtgttgttcatcgtattccagaaatgccgccgagacaggactcttcgcatatccaagactacagggggcgcactgattgccttccggtacagtgatctgcagcatgtcaccagcaacttctcagagaagctgggtggaggtgcctttggcacagtatttaaagggaagctcccagattcaacagccattgcagtgaagaggcttgatggactgagccagggggagaagcaattccgtgctgaggtaagcaccatcgggaccatccaacatgtcaatctggttcgcctacttggtttctgctctgaaggatcaagaagactgcttgtctatgagtacatgccaaagggctccctggaattgcagctgttccatggtgagacaacggcactgaactgggccataaggtatcaaattgcacttggaacagcaaggggcctaaattacctgcatgaaaaatgtagggattgcataatacactgtgatgttaagccagataacatacttttggatgagtcatttgtacccaaagtgtctgactttggtctagcaaagctcttagggcgggatttcagccgtgttttgacaacaatgagagggacaaggggttaccttgcgcctgagtggatcagtggtgtgccgattactcctaaggcagatgtcttcagctatggcatgatgctcttcgaactcatatcaggcagaaggaatgctgatctaggggaggagggaaagtcctctttcttcccaactttggctgtaaacaaactccaggaaggtgatgtgcagaccttgttagaccccaggttgaatggagatgccagtgctgatgagctcacaaaagcttgcaaggttgcctgctggtgtatccaagatgatgaaaatggcagacctacaatgggtcaggtcgtccaaattttagagggattccttgatgtcaacatgcctcctgttccaaggtcactgaaggttcttgatgaaagccctgatgtcataaattttttctcagatgtttcatcaagtcaaacttcgcagatgcataatagcacagcttcttcgcagacaaagagttctacttcaggtggttcacaatttcagagcacataa
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| Protein seq | MAPVFFLLLFSQIFLCTAVDTINSTTPLSGTQKIVSKGGRFALGFYTPPQGNNTASGTGNYYIAIWYNNIPLQTTVWTANSDVPVSDPTTASLSIGSDGNLVLLDQSKNRQLWSTNVSVASNSTVAVIQDGGSLDLMDATNSSIVYWRSIDHPTNTWLPGGKLGLNKTTGVSQRLVPWRNNANPSPGLFSLELDPNGTTQYFIQWNDSITYWTSGPWNGNIFSLVPEMTAGYNYNFRFINNVSESYFIYSMKDDSIISRFTIDVNGQIKQWTWVPASENWILFWSQPRTQCEVYGLCGAYGSCNLNVLPFCNCIKGFSQKFQSDWDLQDFTGGCKRNVPLQCQTNSSSAQTQPDKFYSMVSVRLPDNAQSAVAASSQACQVACLNNCSCNAYTYNSSGCFVWHGDLINLQDQYNGNGGGTLFLRLAASELPDSKKSKKMIIGAVVGGVAAALIILAIVLFIVFQKCRRDRTLRISKTTGGALIAFRYSDLQHVTSNFSEKLGGGAFGTVFKGKLPDSTAIAVKRLDGLSQGEKQFRAEVSTIGTIQHVNLVRLLGFCSEGSRRLLVYEYMPKGSLELQLFHGETTALNWAIRYQIALGTARGLNYLHEKCRDCIIHCDVKPDNILLDESFVPKVSDFGLAKLLGRDFSRVLTTMRGTRGYLAPEWISGVPITPKADVFSYGMMLFELISGRRNADLGEEGKSSFFPTLAVNKLQEGDVQTLLDPRLNGDASADELTKACKVACWCIQDDENGRPTMGQVVQILEGFLDVNMPPVPRSLKVLDESPDVINFFSDVSSSQTSQMHNSTASSQTKSSTSGGSQFQST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.060436 | 0.110987 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0553633 | RBH | 1.043140 | 0.000000 | 1.187818 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g36780 | RBH | 1.019066 | 0.818700 | 0.352990 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0553633 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0019060 | RBH | 0.515142 | 5.935747 | 3.275156 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0019000 | RBH | 0.185881 | 0.392915 | 0.960318 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018950 | RBH | 0.538041 | 6.346584 | 6.634002 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0018840 | RBH | 0.013028 | 0.021409 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018890 | RBH | 1.653443 | 9.811629 | 5.942275 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0359600 | RBH | 3.498861 | 12.7555275 | 6.279047 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0019370 | RBH | 0.131688 | 0.434869 | 0.476833 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0371600 | RBH | 3.625054 | 10.5737475 | 11.389004 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0018830 | RBH | 0.199487 | 5.496959 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0018730 | RBH | 8.575632 | 2.307000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018960 | SBH | 0.576370 | 0.203593 | 0.596269 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0018790 | RBH | 0.000000 | 1.440289 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G018660 | RBH | 0.255902 | 1.736228 | 1.801133 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0018760 | RBH | 1.235195 | 9.617001 | 5.193858 |
