Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0017610 | OGI:07058990 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:21895375-21918727 | ||||||||
| Gene Symbol | RLCK234, OsRLCK234 | ||||||||||
| DNA seq | accctcacgccatggccacgccacgtggccatctccccgcctgcgtcgccgccgccgcggcggcggcggcggcgctcctaacctccctcctaccgccgcccgtcgcaggccagcccctcggcaacttctgcggcgacagcggcaactacaccgcgaacagcacctaccagggcaacatccggagcctctccgccaccctccccaagaacgcctcctcgtcccggacgctcttcgccaccgccaccctcggcgccgtcccggacatcgtctacgcgctcgcgctctgccgcggcgacaccgccaacgcctccgcctgcgccggctgcgtcgccgccgcgttccaggacgcgcagcagctctgcccctacgacaaggacgccaccgtcttctacgacgcctgcgcgctccgcttctccaaccagaacttcctcgcctccaccaacggcgacaacaagttcctcatcctcatgaacacaaagaacgtgtccgcgccggccaaggtgttcgacgccgccgtgggcgtcctcatcaacgccaccgccgactacgcggcggcgaactcgtccaggcggttcggcacgggggaggaagggttcaacggcagcaagatttacgggctggcgcagtgcacgccggacatggcgacggccacctgccggagctgcctgggggggatcgtcgggatgatgcccaagtatttcagcgggaagcagggcggcaggatcctcggactccggtgccactacaggtacgagatatatccgttcttcaacggggtctcgctgctgcagctcccggcggcatcactgggagcgccgccggcgccgtctccggcgcccgtgaacgtgacgccaccggccaccaccggaggaggaggtgagttgggtgaaactgatatagatctcgtatcttgtttgcatttacatgcacttctatatatttacaaaaatgtgatgttataaggtactcactccgtttcacaatgtaagtcattttagcatttcccacattcatattaatgttaataaatttagatatatatctatttagattcattagcatcaatatgaatgtgggaaatgatagaatgacttacattgtgaaacggaggaagtacagttcaagggggaaaaacagtcaccaaaacggagccacccttacggcatatttgcaaatgaaaaataatttgtgaataaaacttttatatacgtgctcttacttcttatcgatctaaaagcaaaggctgaaaaataaacttagatgaaaaaacctcaaaatcagctccaaatttaaggttgaaaatttaaattttgattgataagcataatcataaatgaaaagatgaggccctttgctctcagaaatgaactgaagttaattcaatggacaggatctgtgcttgcacgtgtgcagcgattttaatccgatggattcaaataaaaatgttgcttgatttcactataggaatttgaaatgatatttgattcggtgatgctatcagcaaactagagcaatggattctggattgatccacaacactacagtcctttctttgtatgttttctttgaaaaaaaaaaagaaaccaaaaagtttctgttgtagtaattgttttgcacagaagtagaaaaagaaaatacgtgaagcaaataagcaagtacgaacagatcattctgggaggcaaacttccaaccatgtctggtacttgtttttctgccttttagtttttgtttggtattgtcttctatgcagtcccgtggtcccgtagctatcagctgcttgactgaagatcaagggaaattatgtacgtgtccttgcttgactgagagaagaaaaaacaatcatgtcctgacccctgacttgggcttatacgatgatatcggccttaccaagtcagtccgtagttacaaactgctcgttaaatcataaatcgggcaagttcaaaccaaaattctattttttggcaaaatttgtccaaattccaccgcttttcgtcgataaccgctcgattatcatggttagttggttatcgacaaaaccagtagggggcagtttttcgatgacaaatggcatatataagccctgcttctgaccatttgtgcatcctgaatgaataggttgccctggaacttgtctagttgtctttgatttggagttagaatagtcctccatgatcggtgttaagtatgaacgaatttggaagtaactatcttctttctcattctgtgttatggtctgatgttcacatcttaattgcataaatgcatgctttttttttgttagataccacatgttttaatgattgtgcacttcatgaagaaaataactaaaaaacatcatgctactcctgttgtctacatggtatttgaaatgatggcgataatgaatggtgtatcatattctttttttctttaattcttgaaactgcagcacaaatataatgcttatactgagaggtgttagagctcttttctcatgtgtcaatctcgactattcctgtcaattttcatcttgtctaaaaaattcttctccatataattgttcatagaagcaattcataaagcttgtagcactagcgtgcacacattaaagctgtcaaaattgtttatacttgtgtttgtggatttttctaaagaacttaatcaagttaaatgtgtgctaaaacataatagatgcatcattttctcgacaatctaattgtgttttatgtcttactttaattgatacattccatttatggaatgaacagggaacaaaactggtagggttttggccattgcattacctatagtcgcagcaataatagctgctgtagtaatttgcttttatatatggaagaggaagacggaacgagcaagaaagccatcaatagcaggtaagttctcaatacactggaaatggcaaaattatgtttttgtctatgcagtgacttcattctcatacaaaagcaagaattccattaatgcattacctcattattgaagtaatttttttttctgaaacaatagatccaacagatccagaggacataggaagtattgattcacttattcttagtatatcaactttacgggtggcaacagacaactttgatgacagcaataaacttggcgaaggaggtttcggtgtggtttataaggtgctaattataccatttcattttagcttttatattcaatagtttacattttcagccagtaaaaatctctatctgtgcagggagtcctccctagtgatcaagaaatagcagtgaaaaggctatcgcaaagttctcgacaagggatagaggagttgaaaaatgagcttgttttggtcgctaagcttcaacacaagaatttggttagactccttggtgtttgcttggaagaacatgaaaaattacttgtgtatgaatacatgcctaacaaaagcctcgacacaattctgtttggtagatactcttcagccttttcaacagtgaatcaataactggaacttttttctgtataattttgaagtttcttcttctatgtgacagatcctgatagaagcaatgtgctggattggtggaaaagattaaagatagtcaatgggatcgctcgaggcttacaatatcttcacgaagattctcagctgaagattattcaccgggacctaaaagcaagcaatgttctgttggattccgattttaatcctaagatttcagattttggcttagcaaggctatttgggaatgatcaatcacaagacgtcacaaatcgtgtcatcggaacatagtaagttctgatgatattattggctactaatatattcggtagtatacattagtccttgacataacagaatttctcactgcagtggatacatggcccctgagtacgctatgcgtgggcattactccatcaaatcagatgttttcagctttggcgttctgattttagaaatcgtcacgggaaggaaaaacaatgtctcctacgactccgagcaatcggttgatctcttaagtttggtgagtacctcaggagagatcagctattacaaactctacacccaagtaatgtgttgtattaatatcagaacatttacctatcaaaaaaatgcaggtgtgggaacactggttggcaggaacagctgtagagcttgcagattcatccatggcggggcattgtcctggagaccagatcttgaagtgcgtccacatcggactcctgtgtgttcaagaagaccccacggagagaccaatgatgtcgatggtgaatgtgatgcttagcagcagcaccgtgtctttacaagctccatctaggccggcattttgcatccaaaagagtagtgtcaactcagattcgtactcggagccattccgtggagctaatcactccacagacagatcgcctatgtcaccaaatgaggtttcgatcactgagcttgagccaagataaatccaatgtgatgctgaattcatattgtaccttttttgttttccaaaaaaaaaatctgatgtagggaaagacctacttcatatgtattattacaccatcagacgagagctaccttatgagccggtatattttctgtaggtcccgtagccaactcaaaagaaatattagctatgatccacatatatagtagggcacggtaatataatacgtatactagaaaaatgatagtataagcagacacttgtaagttgtaaccctctgtatgttacttcgcatacgcgtactcattcctgaagggttttttacctacttcctccgtcctacattataagacattttggtatcttcatttcaagtctaagtatgaatttagacacatatataaagtacaaattcattgcagctctttctgaaccctagagagacagaaggggaataggtaaggctggatggctttttttcttttgctgggatgaccaaaggaggccatccaaatattattaagatagagagaaaaaaagtgttactagaaggtttttcattgacagttagctgccgagaaatgatgcgcaccaaaacacatg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| CDS seq | atggccacgccacgtggccatctccccgcctgcgtcgccgccgccgcggcggcggcggcggcgctcctaacctccctcctaccgccgcccgtcgcaggccagcccctcggcaacttctgcggcgacagcggcaactacaccgcgaacagcacctaccagggcaacatccggagcctctccgccaccctccccaagaacgcctcctcgtcccggacgctcttcgccaccgccaccctcggcgccgtcccggacatcgtctacgcgctcgcgctctgccgcggcgacaccgccaacgcctccgcctgcgccggctgcgtcgccgccgcgttccaggacgcgcagcagctctgcccctacgacaaggacgccaccgtcttctacgacgcctgcgcgctccgcttctccaaccagaacttcctcgcctccaccaacggcgacaacaagttcctcatcctcatgaacacaaagaacgtgtccgcgccggccaaggtgttcgacgccgccgtgggcgtcctcatcaacgccaccgccgactacgcggcggcgaactcgtccaggcggttcggcacgggggaggaagggttcaacggcagcaagatttacgggctggcgcagtgcacgccggacatggcgacggccacctgccggagctgcctgggggggatcgtcgggatgatgcccaagtatttcagcgggaagcagggcggcaggatcctcggactccggtgccactacaggtacgagatatatccgttcttcaacggggtctcgctgctgcagctcccggcggcatcactgggagcgccgccggcgccgtctccggcgcccgtgaacgtgacgccaccggccaccaccggaggaggagggaacaaaactggtagggttttggccattgcattacctatagtcgcagcaataatagctgctgtagtaatttgcttttatatatggaagaggaagacggaacgagcaagaaagccatcaatagcagatccaacagatccagaggacataggaagtattgattcacttattcttagtatatcaactttacgggtggcaacagacaactttgatgacagcaataaacttggcgaaggaggtttcggtgtggtttataagggagtcctccctagtgatcaagaaatagcagtgaaaaggctatcgcaaagttctcgacaagggatagaggagttgaaaaatgagcttgttttggtcgctaagcttcaacacaagaatttggttagactccttggtgtttgcttggaagaacatgaaaaattacttgtgtatgaatacatgcctaacaaaagcctcgacacaattctgtttgatcctgatagaagcaatgtgctggattggtggaaaagattaaagatagtcaatgggatcgctcgaggcttacaatatcttcacgaagattctcagctgaagattattcaccgggacctaaaagcaagcaatgttctgttggattccgattttaatcctaagatttcagattttggcttagcaaggctatttgggaatgatcaatcacaagacgtcacaaatcgtgtcatcggaacatatggatacatggcccctgagtacgctatgcgtgggcattactccatcaaatcagatgttttcagctttggcgttctgattttagaaatcgtcacgggaaggaaaaacaatgtctcctacgactccgagcaatcggttgatctcttaagtttggtgtgggaacactggttggcaggaacagctgtagagcttgcagattcatccatggcggggcattgtcctggagaccagatcttgaagtgcgtccacatcggactcctgtgtgttcaagaagaccccacggagagaccaatgatgtcgatggtgaatgtgatgcttagcagcagcaccgtgtctttacaagctccatctaggccggcattttgcatccaaaagagtagtgtcaactcagattcgtactcggagccattccgtggagctaatcactccacagacagatcgcctatgtcaccaaatgaggcatggcatttctgcggcagcagcggcgacgtcttcgcgccgaacaccacgtaccagtccaacctcgcgctgctctccgccggcctcgccaagaacgcctcctcctccccggtcctcttcgccgccggcggggtcggcgacccgccggacacggcctacggcctcgcgctctgccgcggcgacaccacgaacgccaccgcctgcggcgcgtgcgtcgccgccgcgttccaggacgggcagcagctgtgcgcctacgccagggaggccaccgtgttctacgacccctgctacctccgcttctccggcaggaacttcctcgccgccgacggcgacaacttcgcggcctacttcagcaaggtgcggaacgtgaccgcgccggccgaggtgttcgacgccgccgtggtcgcgctcctcaacgccaccgcggaccacgcggcggcggcgagctcgcccaggcggttcgccacgggcgtggaggcgttccgcggctggggcgtccgcgacatctacgcgttggtgcagtgcacgccggacatgtcgccggccggctgccggagctgcctggccggcataatctcgtgggtgaacgatcccgactacttcagcgggagcccgaccgggagggttcttggggtgcggtgcaactactggtacgacgtgcatcccttcttcccgggaagcccactgctgcgtctcgacgcgccggcgtttgatgtagcgccaccggcgccgtcacccgctccggtggcggcggactcgacaccaccggcggacagagcaggaagaaagaggacagctgtgataatatctgcatcagttgcttgttccattgtctttgtattgattatttcaggttctgttttcatctgcttgaagaggaggaaggcttccaaaaaccagaaaactccaatcatcccagcaccgaacaaaatcaaaagaggaaattgcgcgatcttcgatttaccaacactgcaaattgcaactgataacttctctgacagtaataagctcggggaaggcggtttcggtactgtgtacaggggaaagcttggtaatgggcaaaaagtagcagtgaagaagctgtcacaggcacagtacaccagagagggactgaaccagctgcacaatgaacttcagttgttggctgagcttcagcacaagaattttgtcagattactgggtttttgctcgcatcaggatgagatgatgcttgtttatgagcacattaagaacgggagccttgacatctttctttttgatactagtagggggaagacacttaactgggagcaacggcacaatatcattcttggaatcgcaaagggaatattgtatcttcacgaagattcgagcataaggatcattcaccgtgatttgaaagcgaacaatatattgttggatgaaaacatgaacccaaaaatcgcagactttgggttgggaaggctactaggaggtggccatactcagaccaagacggctacagttgtcggaacatacggctatatggcgccggagtatgtgctatttgggaaagtgtcacctaagatcgatattttcagctttggtgttttggttcttgaaattgtaaccgggagaaggaatagcagtttcgacaacacatacaacgcagtgaatctcctgacagaagtgtggaattgctggacaaaggggacggcactgcagctggctgatcaatcacttgatggatattccgacagcaaagtgctacgatgcatccacattggtctcctttgtgtccaagagagcccagttgacaggccaagcatatcttcagtgattctaatgttaaccagacgcagaataaaactccagcaaccgcgacaaccggcattcttctttggaggggacttcagttcagtttatcaacaacaacacagacatcgcaactacatgtatgataagtctggtgtgattgttgaggataaattctctgtaaatgatgtcaccaatactgatccctatcctagatga
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| Protein seq | MATPRGHLPACVAAAAAAAAALLTSLLPPPVAGQPLGNFCGDSGNYTANSTYQGNIRSLSATLPKNASSSRTLFATATLGAVPDIVYALALCRGDTANASACAGCVAAAFQDAQQLCPYDKDATVFYDACALRFSNQNFLASTNGDNKFLILMNTKNVSAPAKVFDAAVGVLINATADYAAANSSRRFGTGEEGFNGSKIYGLAQCTPDMATATCRSCLGGIVGMMPKYFSGKQGGRILGLRCHYRYEIYPFFNGVSLLQLPAASLGAPPAPSPAPVNVTPPATTGGGGNKTGRVLAIALPIVAAIIAAVVICFYIWKRKTERARKPSIADPTDPEDIGSIDSLILSISTLRVATDNFDDSNKLGEGGFGVVYKGVLPSDQEIAVKRLSQSSRQGIEELKNELVLVAKLQHKNLVRLLGVCLEEHEKLLVYEYMPNKSLDTILFDPDRSNVLDWWKRLKIVNGIARGLQYLHEDSQLKIIHRDLKASNVLLDSDFNPKISDFGLARLFGNDQSQDVTNRVIGTYGYMAPEYAMRGHYSIKSDVFSFGVLILEIVTGRKNNVSYDSEQSVDLLSLVWEHWLAGTAVELADSSMAGHCPGDQILKCVHIGLLCVQEDPTERPMMSMVNVMLSSSTVSLQAPSRPAFCIQKSSVNSDSYSEPFRGANHSTDRSPMSPNEAWHFCGSSGDVFAPNTTYQSNLALLSAGLAKNASSSPVLFAAGGVGDPPDTAYGLALCRGDTTNATACGACVAAAFQDGQQLCAYAREATVFYDPCYLRFSGRNFLAADGDNFAAYFSKVRNVTAPAEVFDAAVVALLNATADHAAAASSPRRFATGVEAFRGWGVRDIYALVQCTPDMSPAGCRSCLAGIISWVNDPDYFSGSPTGRVLGVRCNYWYDVHPFFPGSPLLRLDAPAFDVAPPAPSPAPVAADSTPPADRAGRKRTAVIISASVACSIVFVLIISGSVFICLKRRKASKNQKTPIIPAPNKIKRGNCAIFDLPTLQIATDNFSDSNKLGEGGFGTVYRGKLGNGQKVAVKKLSQAQYTREGLNQLHNELQLLAELQHKNFVRLLGFCSHQDEMMLVYEHIKNGSLDIFLFDTSRGKTLNWEQRHNIILGIAKGILYLHEDSSIRIIHRDLKANNILLDENMNPKIADFGLGRLLGGGHTQTKTATVVGTYGYMAPEYVLFGKVSPKIDIFSFGVLVLEIVTGRRNSSFDNTYNAVNLLTEVWNCWTKGTALQLADQSLDGYSDSKVLRCIHIGLLCVQESPVDRPSISSVILMLTRRRIKLQQPRQPAFFFGGDFSSVYQQQHRHRNYMYDKSGVIVEDKFSVNDVTNTDPYPR |
||||||||||
| Function | Cysteine-rich receptor-like protein kinase 6 [UniProtKB/Swiss-Prot:Q0D5R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0017610 | OsLima_07g0017610.03 | Chr07 | 21905806 | 21918727 | + | NAM | ||
| CDS seq | atggcgcgccaccgcgtacgctgcctcctagccgccgcgctcctcctcgtcgcgccgatggcggcggcccagccgtggcagttctgcgggcagagcggcaacttctcggcgaacagcgcgtaccagtccaacctccgccagctctccgccaccctccccaagaacgcctccgccgccctcttcgcggccggcagcctcggcaccgtcccggacatcgtctacgcgctcgcgctctgccgcggcgacatcgccaacgcctccgcctgcgagtcctgcgtcgacaacgccttccaggggggccagcagctgtgcccctacaacaaggacgtgttcatcgtctacgacctctgctacctccgcttcaccaaccgcaacctcctcgcctccgccacggacaacgggagccccatgatgctcatgaacgcgcagaacgcgagcgcgacggcggaggtgttcgacgccgccgccgccaccctcctcaacgccaccagcagctacgcggcggcgaactcgtccaggcggttcgccacgggggaggaggccttcgatgccgccgaccccaccatctacgggctgtcccagtgcacgccggacatgtcgccggacgactgccggagctgcctcgggggcataatcgcgttgatacctcagtacttcggccggaagaggggcgcgagggttatcgggacgcgctgcaactacaggtacgaggtgtatcctttcttcgccggaggctcgatgctgcggctcccggcgccggcggcgcctccgtctgcacctggaccagcaaacatgacgccaccgccgcccactggagaggcggagaagaagatcaaggtcaaaacagcagcattcatttacatcgcatcaaaatgttgttgccctcttttgatagattcaatgcaaatgggggaggacattgaaagcgtagattcactttttatcgatctatcaacgctgcgtgctgcgacaggcaacttttccgagacaaataggcttggtgaaggaggatttggttcagtttataagggtgtccttcctaatggtgaagagatagctgtaaagaggctctctatgagttcaggacaaggaatagaagagctaaagaatgagcttgttttggtcgccaaacttcagcacaagaatcttgttaggcttgttggtgtttgcttgcaacaacatgagaaattgcttgtgtatgaatacatgcccaatagaagtatcgacaccattctatttgatcttgacagaaggagggaactagactggggaaaaagatttaggataataaacggaattgctcgaggattacaatatcttcaagaagattctcagctgagaataattcaccgggacctcaaagcaagcaatgttctattggactccgactatactcctaagatttcggattttggtttggcaaggctatttgggggtgatcaaacaagggagatcacgcgccgtgttgtcggaacatacggatatatggcgccagaatatgcaatgcgtgggcactattctgtaaagtcagatgtctttagctttggcatattgataatagaaattgtgacaggaaggagaagcagtggttcactcagctttgatcaatcaaacgatctcctaagtcttgtatgggagcactggaccatgggaacaattttggagatgatggatccatctcttacaagccatgctcctcgagaccagatgctgaagtgtattcacattgggctactgtgtgttcaagataacccagcggatagacctatgatgtcaacagtgaatgtcatgcttagcagcagcacagtgtctcttcaatctccatccaagccatcatttttcattcccaagagtgacacagactcaaatatatactcggaatcacacccactaacttcccaatcgactgcctcgaccgtgaagtggtacggggagtcggtgaaagggtcttacctgccggcgggggaaagtgaatcggcctgcgacatgaagtccctcgtgccgaagtcgtcgctgtccatctccgcctag
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| Protein seq | MARHRVRCLLAAALLLVAPMAAAQPWQFCGQSGNFSANSAYQSNLRQLSATLPKNASAALFAAGSLGTVPDIVYALALCRGDIANASACESCVDNAFQGGQQLCPYNKDVFIVYDLCYLRFTNRNLLASATDNGSPMMLMNAQNASATAEVFDAAAATLLNATSSYAAANSSRRFATGEEAFDAADPTIYGLSQCTPDMSPDDCRSCLGGIIALIPQYFGRKRGARVIGTRCNYRYEVYPFFAGGSMLRLPAPAAPPSAPGPANMTPPPPTGEAEKKIKVKTAAFIYIASKCCCPLLIDSMQMGEDIESVDSLFIDLSTLRAATGNFSETNRLGEGGFGSVYKGVLPNGEEIAVKRLSMSSGQGIEELKNELVLVAKLQHKNLVRLVGVCLQQHEKLLVYEYMPNRSIDTILFDLDRRRELDWGKRFRIINGIARGLQYLQEDSQLRIIHRDLKASNVLLDSDYTPKISDFGLARLFGGDQTREITRRVVGTYGYMAPEYAMRGHYSVKSDVFSFGILIIEIVTGRRSSGSLSFDQSNDLLSLVWEHWTMGTILEMMDPSLTSHAPRDQMLKCIHIGLLCVQDNPADRPMMSTVNVMLSSSTVSLQSPSKPSFFIPKSDTDSNIYSESHPLTSQSTASTVKWYGESVKGSYLPAGESESACDMKSLVPKSSLSISA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0017610 | OsLima_07g0017610.01 | Chr07 | 21895375 | 21905501 | + | NAM | ||
| CDS seq | atggccacgccacgtggccatctccccgcctgcgtcgccgccgccgcggcggcggcggcggcgctcctaacctccctcctaccgccgcccgtcgcaggccagcccctcggcaacttctgcggcgacagcggcaactacaccgcgaacagcacctaccagggcaacatccggagcctctccgccaccctccccaagaacgcctcctcgtcccggacgctcttcgccaccgccaccctcggcgccgtcccggacatcgtctacgcgctcgcgctctgccgcggcgacaccgccaacgcctccgcctgcgccggctgcgtcgccgccgcgttccaggacgcgcagcagctctgcccctacgacaaggacgccaccgtcttctacgacgcctgcgcgctccgcttctccaaccagaacttcctcgcctccaccaacggcgacaacaagttcctcatcctcatgaacacaaagaacgtgtccgcgccggccaaggtgttcgacgccgccgtgggcgtcctcatcaacgccaccgccgactacgcggcggcgaactcgtccaggcggttcggcacgggggaggaagggttcaacggcagcaagatttacgggctggcgcagtgcacgccggacatggcgacggccacctgccggagctgcctgggggggatcgtcgggatgatgcccaagtatttcagcgggaagcagggcggcaggatcctcggactccggtgccactacaggtacgagatatatccgttcttcaacggggtctcgctgctgcagctcccggcggcatcactgggagcgccgccggcgccgtctccggcgcccgtgaacgtgacgccaccggccaccaccggaggaggagggaacaaaactggtagggttttggccattgcattacctatagtcgcagcaataatagctgctgtagtaatttgcttttatatatggaagaggaagacggaacgagcaagaaagccatcaatagcagatccaacagatccagaggacataggaagtattgattcacttattcttagtatatcaactttacgggtggcaacagacaactttgatgacagcaataaacttggcgaaggaggtttcggtgtggtttataagggagtcctccctagtgatcaagaaatagcagtgaaaaggctatcgcaaagttctcgacaagggatagaggagttgaaaaatgagcttgttttggtcgctaagcttcaacacaagaatttggttagactccttggtgtttgcttggaagaacatgaaaaattacttgtgtatgaatacatgcctaacaaaagcctcgacacaattctgtttgatcctgatagaagcaatgtgctggattggtggaaaagattaaagatagtcaatgggatcgctcgaggcttacaatatcttcacgaagattctcagctgaagattattcaccgggacctaaaagcaagcaatgttctgttggattccgattttaatcctaagatttcagattttggcttagcaaggctatttgggaatgatcaatcacaagacgtcacaaatcgtgtcatcggaacatatggatacatggcccctgagtacgctatgcgtgggcattactccatcaaatcagatgttttcagctttggcgttctgattttagaaatcgtcacgggaaggaaaaacaatgtctcctacgactccgagcaatcggttgatctcttaagtttggtgtgggaacactggttggcaggaacagctgtagagcttgcagattcatccatggcggggcattgtcctggagaccagatcttgaagtgcgtccacatcggactcctgtgtgttcaagaagaccccacggagagaccaatgatgtcgatggtgaatgtgatgcttagcagcagcaccgtgtctttacaagctccatctaggccggcattttgcatccaaaagagtagtgtcaactcagattcgtactcggagccattccgtggagctaatcactccacagacagatcgcctatgtcaccaaatgaggcatggcatttctgcggcagcagcggcgacgtcttcgcgccgaacaccacgtaccagtccaacctcgcgctgctctccgccggcctcgccaagaacgcctcctcctccccggtcctcttcgccgccggcggggtcggcgacccgccggacacggcctacggcctcgcgctctgccgcggcgacaccacgaacgccaccgcctgcggcgcgtgcgtcgccgccgcgttccaggacgggcagcagctgtgcgcctacgccagggaggccaccgtgttctacgacccctgctacctccgcttctccggcaggaacttcctcgccgccgacggcgacaacttcgcggcctacttcagcaaggtgcggaacgtgaccgcgccggccgaggtgttcgacgccgccgtggtcgcgctcctcaacgccaccgcggaccacgcggcggcggcgagctcgcccaggcggttcgccacgggcgtggaggcgttccgcggctggggcgtccgcgacatctacgcgttggtgcagtgcacgccggacatgtcgccggccggctgccggagctgcctggccggcataatctcgtgggtgaacgatcccgactacttcagcgggagcccgaccgggagggttcttggggtgcggtgcaactactggtacgacgtgcatcccttcttcccgggaagcccactgctgcgtctcgacgcgccggcgtttgatgtagcgccaccggcgccgtcacccgctccggtggcggcggactcgacaccaccggcggacagagcaggaagaaagaggacagctgtgataatatctgcatcagttgcttgttccattgtctttgtattgattatttcaggttctgttttcatctgcttgaagaggaggaaggcttccaaaaaccagaaaactccaatcatcccagcaccgaacaaaatcaaaagaggaaattgcgcgatcttcgatttaccaacactgcaaattgcaactgataacttctctgacagtaataagctcggggaaggcggtttcggtactgtgtacaggggaaagcttggtaatgggcaaaaagtagcagtgaagaagctgtcacaggcacagtacaccagagagggactgaaccagctgcacaatgaacttcagttgttggctgagcttcagcacaagaattttgtcagattactgggtttttgctcgcatcaggatgagatgatgcttgtttatgagcacattaagaacgggagccttgacatctttctttttgatactagtagggggaagacacttaactgggagcaacggcacaatatcattcttggaatcgcaaagggaatattgtatcttcacgaagattcgagcataaggatcattcaccgtgatttgaaagcgaacaatatattgttggatgaaaacatgaacccaaaaatcgcagactttgggttgggaaggctactaggaggtggccatactcagaccaagacggctacagttgtcggaacatacggctatatggcgccggagtatgtgctatttgggaaagtgtcacctaagatcgatattttcagctttggtgttttggttcttgaaattgtaaccgggagaaggaatagcagtttcgacaacacatacaacgcagtgaatctcctgacagaagtgtggaattgctggacaaaggggacggcactgcagctggctgatcaatcacttgatggatattccgacagcaaagtgctacgatgcatccacattggtctcctttgtgtccaagagagcccagttgacaggccaagcatatcttcagtgattctaatgttaaccagacgcagaataaaactccagcaaccgcgacaaccggcattcttctttggaggggacttcagttcagtttatcaacaacaacacagacatcgcaactacatgtatgataagtctggtgtgattgttgaggataaattctctgtaaatgatgtcaccaatactgatccctatcctagatga
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| Protein seq | MATPRGHLPACVAAAAAAAAALLTSLLPPPVAGQPLGNFCGDSGNYTANSTYQGNIRSLSATLPKNASSSRTLFATATLGAVPDIVYALALCRGDTANASACAGCVAAAFQDAQQLCPYDKDATVFYDACALRFSNQNFLASTNGDNKFLILMNTKNVSAPAKVFDAAVGVLINATADYAAANSSRRFGTGEEGFNGSKIYGLAQCTPDMATATCRSCLGGIVGMMPKYFSGKQGGRILGLRCHYRYEIYPFFNGVSLLQLPAASLGAPPAPSPAPVNVTPPATTGGGGNKTGRVLAIALPIVAAIIAAVVICFYIWKRKTERARKPSIADPTDPEDIGSIDSLILSISTLRVATDNFDDSNKLGEGGFGVVYKGVLPSDQEIAVKRLSQSSRQGIEELKNELVLVAKLQHKNLVRLLGVCLEEHEKLLVYEYMPNKSLDTILFDPDRSNVLDWWKRLKIVNGIARGLQYLHEDSQLKIIHRDLKASNVLLDSDFNPKISDFGLARLFGNDQSQDVTNRVIGTYGYMAPEYAMRGHYSIKSDVFSFGVLILEIVTGRKNNVSYDSEQSVDLLSLVWEHWLAGTAVELADSSMAGHCPGDQILKCVHIGLLCVQEDPTERPMMSMVNVMLSSSTVSLQAPSRPAFCIQKSSVNSDSYSEPFRGANHSTDRSPMSPNEAWHFCGSSGDVFAPNTTYQSNLALLSAGLAKNASSSPVLFAAGGVGDPPDTAYGLALCRGDTTNATACGACVAAAFQDGQQLCAYAREATVFYDPCYLRFSGRNFLAADGDNFAAYFSKVRNVTAPAEVFDAAVVALLNATADHAAAASSPRRFATGVEAFRGWGVRDIYALVQCTPDMSPAGCRSCLAGIISWVNDPDYFSGSPTGRVLGVRCNYWYDVHPFFPGSPLLRLDAPAFDVAPPAPSPAPVAADSTPPADRAGRKRTAVIISASVACSIVFVLIISGSVFICLKRRKASKNQKTPIIPAPNKIKRGNCAIFDLPTLQIATDNFSDSNKLGEGGFGTVYRGKLGNGQKVAVKKLSQAQYTREGLNQLHNELQLLAELQHKNFVRLLGFCSHQDEMMLVYEHIKNGSLDIFLFDTSRGKTLNWEQRHNIILGIAKGILYLHEDSSIRIIHRDLKANNILLDENMNPKIADFGLGRLLGGGHTQTKTATVVGTYGYMAPEYVLFGKVSPKIDIFSFGVLVLEIVTGRRNSSFDNTYNAVNLLTEVWNCWTKGTALQLADQSLDGYSDSKVLRCIHIGLLCVQESPVDRPSISSVILMLTRRRIKLQQPRQPAFFFGGDFSSVYQQQHRHRNYMYDKSGVIVEDKFSVNDVTNTDPYPR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0017610 | OsLima_07g0017610.02 | Chr07 | 21905798 | 21909755 | + | NAM | ||
| CDS seq | atggcgcgccaccgcgtacgctgcctcctagccgccgcgctcctcctcgtcgcgccgatggcggcggcccagccgtggcagttctgcgggcagagcggcaacttctcggcgaacagcgcgtaccagtccaacctccgccagctctccgccaccctccccaagaacgcctccgccgccctcttcgcggccggcagcctcggcaccgtcccggacatcgtctacgcgctcgcgctctgccgcggcgacatcgccaacgcctccgcctgcgagtcctgcgtcgacaacgccttccaggggggccagcagctgtgcccctacaacaaggacgtgttcatcgtctacgacctctgctacctccgcttcaccaaccgcaacctcctcgcctccgccacggacaacgggagccccatgatgctcatgaacgcgcagaacgcgagcgcgacggcggaggtgttcgacgccgccgccgccaccctcctcaacgccaccagcagctacgcggcggcgaactcgtccaggcggttcgccacgggggaggaggccttcgatgccgccgaccccaccatctacgggctgtcccagtgcacgccggacatgtcgccggacgactgccggagctgcctcgggggcataatcgcgttgatacctcagtacttcggccggaagaggggcgcgagggttatcgggacgcgctgcaactacaggtacgaggtgtatcctttcttcgccggaggctcgatgctgcggctcccggcgccggcggcgcctccgtctgcacctggaccagcaaacatgacgccaccgccgcccactggagaaagaaagaaaaataaaagtggcacagctctagtcattgcactgcccctagttgttgtattgctggctacgaggcggagaagaagatcaaggtcaaaacagcagcattcatattcaatgcaaatgggggaggacattgaaagcgtagattcactttttatcgatctatcaacgctgcgtgctgcgacaggcaacttttccgagacaaataggcttggtgaaggaggatttggttcagtttataagggtgtccttcctaatggtgaagagatagctgtaaagaggctctctatgagttcaggacaaggaatagaagagctaaagaatgagcttgttttggtcgccaaacttcagcacaagaatcttgttaggcttgttggtgtttgcttgcaacaacatgagaaattgcttgtgtatgaatacatgcccaatagaagtatcgacaccattctatttgatcttgacagaaggagggaactagactggggaaaaagatttaggataataaacggaattgctcgaggattacaatatcttcaagaagattctcagctgagaataattcaccgggacctcaaagcaagcaatgttctattggactccgactatactcctaagatttcggattttggtttggcaaggctatttgggggtgatcaaacaagggagatcacgcgccgtgttgtcggaacatacggatatatggcgccagaatatgcaatgcgtgggcactattctgtaaagtcagatgtctttagctttggcatattgataatagaaattgtgacaggaaggagaagcagtggttcactcagctttgatcaatcaaacgatctcctaagtcttgtatgggagcactggaccatgggaacaattttggagatgatggatccatctcttacaagccatgctcctcgagaccagatgctgaagtgtattcacattgggctactgtgtgttcaagataacccagcggatagacctatgatgtcaacagtgaatgtcatgcttagcagcagcacagtgtctcttcaatctccatccaagccatcatttttcattcccaagagtgacacagactcaaatatatactcggaatcacacccactaacttcccaatcgactgcctcgaccggtaggtcgggagggatgtcagttaatgatgtgtcaattacagagcttgaaccaagataa
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| Protein seq | MARHRVRCLLAAALLLVAPMAAAQPWQFCGQSGNFSANSAYQSNLRQLSATLPKNASAALFAAGSLGTVPDIVYALALCRGDIANASACESCVDNAFQGGQQLCPYNKDVFIVYDLCYLRFTNRNLLASATDNGSPMMLMNAQNASATAEVFDAAAATLLNATSSYAAANSSRRFATGEEAFDAADPTIYGLSQCTPDMSPDDCRSCLGGIIALIPQYFGRKRGARVIGTRCNYRYEVYPFFAGGSMLRLPAPAAPPSAPGPANMTPPPPTGERKKNKSGTALVIALPLVVVLLATRRRRRSRSKQQHSYSMQMGEDIESVDSLFIDLSTLRAATGNFSETNRLGEGGFGSVYKGVLPNGEEIAVKRLSMSSGQGIEELKNELVLVAKLQHKNLVRLVGVCLQQHEKLLVYEYMPNRSIDTILFDLDRRRELDWGKRFRIINGIARGLQYLQEDSQLRIIHRDLKASNVLLDSDYTPKISDFGLARLFGGDQTREITRRVVGTYGYMAPEYAMRGHYSVKSDVFSFGILIIEIVTGRRSSGSLSFDQSNDLLSLVWEHWTMGTILEMMDPSLTSHAPRDQMLKCIHIGLLCVQDNPADRPMMSTVNVMLSSSTVSLQSPSKPSFFIPKSDTDSNIYSESHPLTSQSTASTGRSGGMSVNDVSITELEPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 21907919 | 21908074 | + | OsLima_07g0017610.03 | OsLima_07g0017610.03,OsLima_07g0017610.02 | All |
| SE | Chr07 | 21906651 | 21907880 | + | OsLima_07g0017610.02 | OsLima_07g0017610.03,OsLima_07g0017610.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.052541 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0537000 | RBH | 1.724079 | 1.268597 | 1.709922 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35280 | RBH | 0.0 | 0.000000 | 0.104350 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0537200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0017980 | RBH | 0.0 | 4.960012 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0017870 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0017840 | RBH | 2.699874 | 0.0 | 2.725205 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017760 | RBH | 0.380633 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0017870 | RBH | 5.590810 | 5.120667 | 2.246069 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0350300 | SBH | 3.6307285 | 1.8313365 | 0.4744905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018360 | RBH | 0.0 | 0.040372 | 0.054509 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0358500 | RBH | 3.48834 | 2.7568445 | 1.5481035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017940 | SBH | 0.026354 | 0.135489 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017710 | RBH | 0.0 | 31.056480 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0017990 | RBH | 1.133148 | 0.598885 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017780 | RBH | 0.0 | 1.197930 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017760 | RBH | 1.442547 | 0.0 | 0.836613 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0018030 | SBH | 0.0 | 0.0 | 0.0 |
